mRNA_H-elongata_contig121707.1660.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig121707.1660.1
Unique Name	mRNA_H-elongata_contig121707.1660.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig121707.1660.1 vs. uniprot
Match: D7G148_ECTSI (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G148_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 6.600e-38
Identity = 63/116 (54.31%), Postives = 86/116 (74.14%), Query Frame = 1

Query:   28 QVVRVANILGLPRVIKTDCGFVADGICTLAVLLYRLAYACTLKHVRLVFGLSPSCISDIFNFLLHWVHSKWGFLLKLDIDRIAHRLPEFAEAVHASGAPMTRVWGFVDGTVRPVAR 375
            Q++ + ++L +P  I+TDCGFV  G   L VLLYRLA+ C LK +RLVFGLS SCI   FN++LH++  KWG+LL LD++R+  RL EFAEA++ +  P+T  WGF+DGTVR +AR
Sbjct:   56 QIMLMLDLLLIPAFIRTDCGFVVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCICQTFNWMLHFLEFKWGWLLSLDVERLKPRLVEFAEAIYNADCPLTHCWGFIDGTVRGIAR 171

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BLAST of mRNA_H-elongata_contig121707.1660.1 vs. uniprot
Match: A0A6H5JYJ9_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ9_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.360e-37
Identity = 63/119 (52.94%), Postives = 85/119 (71.43%), Query Frame = 1

Query:   19 FYVQVVRVANILGLPRVIKTDCGFVADGICTLAVLLYRLAYACTLKHVRLVFGLSPSCISDIFNFLLHWVHSKWGFLLKLDIDRIAHRLPEFAEAVHASGAPMTRVWGFVDGTVRPVAR 375
            F  ++V +  +L +P +I+T+CGFV  G   L VLLYRLA+ C LK +RLVFGLS SCI + FN++LH++  KWGFLL LD+ R+  +L  FAEAV+  G P+T  W F+DGTVR +AR
Sbjct:   54 FMSKIVLMLELLMVPAIIRTECGFVVGGREALCVLLYRLAFPCRLKDMRLVFGLSESCICETFNWMLHFMDFKWGFLLSLDVQRLVPKLRTFAEAVYNKGCPLTHCWAFIDGTVRGIAR 172

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BLAST of mRNA_H-elongata_contig121707.1660.1 vs. uniprot
Match: A0A6H5KRJ1_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ1_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.870e-37
Identity = 63/116 (54.31%), Postives = 86/116 (74.14%), Query Frame = 1

Query:   28 QVVRVANILGLPRVIKTDCGFVADGICTLAVLLYRLAYACTLKHVRLVFGLSPSCISDIFNFLLHWVHSKWGFLLKLDIDRIAHRLPEFAEAVHASGAPMTRVWGFVDGTVRPVAR 375
            QV+ + ++L +P  I+TDCGFV  G   L VLLYRLA+ C LK +RLVFG+S SCI ++FN++LH++  +WG+LL LD+ R+   L EFAEA+  SG P+T  WGF+DGTVR +AR
Sbjct:   62 QVMLMLDLLLIPAFIRTDCGFVVSGREALCVLLYRLAFPCRLKDMRLVFGMSESCICEVFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAIFNSGCPLTHCWGFIDGTVRGIAR 177

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BLAST of mRNA_H-elongata_contig121707.1660.1 vs. uniprot
Match: D8LL85_ECTSI (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LL85_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 2.530e-37
Identity = 63/116 (54.31%), Postives = 87/116 (75.00%), Query Frame = 1

Query:   28 QVVRVANILGLPRVIKTDCGFVADGICTLAVLLYRLAYACTLKHVRLVFGLSPSCISDIFNFLLHWVHSKWGFLLKLDIDRIAHRLPEFAEAVHASGAPMTRVWGFVDGTVRPVAR 375
            Q++ + ++L +P  I+TDCGF   G   L VLLYRLA+ C LK +RLVFGLS SCIS+ FN++LH++  KWG+LL LD++R+  RL EFAEA++ +  P+T  WGF+DGTVR +AR
Sbjct:   56 QIMLMLDLLLIPAFIRTDCGFAVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCISETFNWMLHFLEFKWGWLLSLDVERLKPRLVEFAEAIYNADCPLTHCWGFIDGTVRGIAR 171

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BLAST of mRNA_H-elongata_contig121707.1660.1 vs. uniprot
Match: A0A6H5JV22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV22_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 8.150e-37
Identity = 63/116 (54.31%), Postives = 84/116 (72.41%), Query Frame = 1

Query:   28 QVVRVANILGLPRVIKTDCGFVADGICTLAVLLYRLAYACTLKHVRLVFGLSPSCISDIFNFLLHWVHSKWGFLLKLDIDRIAHRLPEFAEAVHASGAPMTRVWGFVDGTVRPVAR 375
            QV+ + ++L +P  I+TDCGFV  G   L VL YRLA+ C LK +RLVFGLS SCI + FN++LH++  +WG+LL LD+ R+   L EFAEA+  SG P+T  WGF+DGTVR +AR
Sbjct:   61 QVMLILDLLLIPAFIRTDCGFVVSGREALWVLQYRLAFPCRLKDMRLVFGLSESCICEAFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAIFNSGCPLTHCWGFIDGTVRGIAR 176

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BLAST of mRNA_H-elongata_contig121707.1660.1 vs. uniprot
Match: A0A6H5L0K5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K5_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 3.540e-36
Identity = 62/116 (53.45%), Postives = 83/116 (71.55%), Query Frame = 1

Query:   28 QVVRVANILGLPRVIKTDCGFVADGICTLAVLLYRLAYACTLKHVRLVFGLSPSCISDIFNFLLHWVHSKWGFLLKLDIDRIAHRLPEFAEAVHASGAPMTRVWGFVDGTVRPVAR 375
            Q+V +  +L +P +I+TDCGFV  G   L VLLYRLA+ C L+ +RLVFG S SCI + FN++LH++  KWGFLL LD+ R+  +L  FAEAV+  G P+T  W F+DGTVR +AR
Sbjct:  108 QIVLMLELLMVPAIIRTDCGFVVGGREALCVLLYRLAFPCRLEDMRLVFGQSESCICETFNWMLHFMDFKWGFLLSLDVQRLVPKLRTFAEAVYNKGCPLTHCWAFIDGTVRGIAR 223

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BLAST of mRNA_H-elongata_contig121707.1660.1 vs. uniprot
Match: A0A6H5KDJ0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KDJ0_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 6.980e-36
Identity = 59/116 (50.86%), Postives = 84/116 (72.41%), Query Frame = 1

Query:   28 QVVRVANILGLPRVIKTDCGFVADGICTLAVLLYRLAYACTLKHVRLVFGLSPSCISDIFNFLLHWVHSKWGFLLKLDIDRIAHRLPEFAEAVHASGAPMTRVWGFVDGTVRPVAR 375
            QV+ + ++L +P  I+TDCGFV  G   L VLLYRLA++C LK +RLV G+S SCI ++FN++LH++  +W +LL LD+ R+   L EFAE +  SG P+T  WGF+DGTVR +A+
Sbjct:   62 QVMLMLDLLLIPAFIRTDCGFVVSGSGALCVLLYRLAFSCRLKDMRLVLGMSESCICEVFNWMLHFLDFRWVYLLSLDVARLQPHLIEFAEPIFNSGCPLTHCWGFIDGTVRGIAK 177

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BLAST of mRNA_H-elongata_contig121707.1660.1 vs. uniprot
Match: A0A6H5KB08_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB08_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.420e-35
Identity = 63/116 (54.31%), Postives = 84/116 (72.41%), Query Frame = 1

Query:   28 QVVRVANILGLPRVIKTDCGFVADGICTLAVLLYRLAYACTLKHVRLVFGLSPSCISDIFNFLLHWVHSKWGFLLKLDIDRIAHRLPEFAEAVHASGAPMTRVWGFVDGTVRPVAR 375
            QV+ + ++L +P  I+TDC FV  G   L VLLYRLA+ C LK +RLVFGLS SCI + FN++LH++  +WG+LL LD+ R+   L EFAEA+  SG P+T  WGF+DGTVR +AR
Sbjct:   37 QVMLMLDLLLIPAFIRTDCEFVVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCICEAFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAIFNSGCPLTHCWGFIDGTVRGIAR 152

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BLAST of mRNA_H-elongata_contig121707.1660.1 vs. uniprot
Match: A0A6H5KJS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS2_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 3.080e-35
Identity = 61/112 (54.46%), Postives = 80/112 (71.43%), Query Frame = 1

Query:   28 QVVRVANILGLPRVIKTDCGFVADGICTLAVLLYRLAYACTLKHVRLVFGLSPSCISDIFNFLLHWVHSKWGFLLKLDIDRIAHRLPEFAEAVHASGAPMTRVWGFVDGTVR 363
            QV+ + ++L +P  I+TDCGFV  G   L VLLYRLA+ C LK +RLVFGLS SCI + FN++LH++  +WG+LL LD+ R+   L EFAEA+  SG P T  WG +DGTVR
Sbjct:   37 QVMLMLDLLLIPAFIRTDCGFVVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCICEAFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAIFNSGCPPTHCWGSIDGTVR 148

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BLAST of mRNA_H-elongata_contig121707.1660.1 vs. uniprot
Match: A0A6H5JS57_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS57_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 5.250e-35
Identity = 62/116 (53.45%), Postives = 83/116 (71.55%), Query Frame = 1

Query:   28 QVVRVANILGLPRVIKTDCGFVADGICTLAVLLYRLAYACTLKHVRLVFGLSPSCISDIFNFLLHWVHSKWGFLLKLDIDRIAHRLPEFAEAVHASGAPMTRVWGFVDGTVRPVAR 375
            Q+V +  +L +P +I+T+CGFV  G   L VLLYRLA+ C LK +RL FGLS SCI + FN++LH++  KWGFLL LD+ R+  +L  FAEAV+  G P+T  W F+DGTVR +AR
Sbjct:  126 QIVLMLELLMVPAIIRTECGFVVGGREALCVLLYRLAFPCCLKDMRLDFGLSESCICETFNWMLHFMDFKWGFLLSLDVQRLVPKLRTFAEAVYNKGCPLTHCWAFIDGTVRGIAR 241

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig121707.1660.1 vs. uniprot

BLAST of mRNA_H-elongata_contig121707.1660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G148_ECTSI	6.600e-38	54.31	DDE Tnp4 domain-containing protein n=1 Tax=Ectocar...	[more]
A0A6H5JYJ9_9PHAE	1.360e-37	52.94	DDE Tnp4 domain-containing protein (Fragment) n=1 ...	[more]
A0A6H5KRJ1_9PHAE	1.870e-37	54.31	DDE Tnp4 domain-containing protein n=1 Tax=Ectocar...	[more]
D8LL85_ECTSI	2.530e-37	54.31	DDE Tnp4 domain-containing protein n=4 Tax=Ectocar...	[more]
A0A6H5JV22_9PHAE	8.150e-37	54.31	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L0K5_9PHAE	3.540e-36	53.45	DDE Tnp4 domain-containing protein n=1 Tax=Ectocar...	[more]
A0A6H5KDJ0_9PHAE	6.980e-36	50.86	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A6H5KB08_9PHAE	1.420e-35	54.31	DDE Tnp4 domain-containing protein n=1 Tax=Ectocar...	[more]
A0A6H5KJS2_9PHAE	3.080e-35	54.46	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JS57_9PHAE	5.250e-35	53.45	DDE Tnp4 domain-containing protein n=4 Tax=Ectocar...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig121707	contig	H-elongata_contig121707:109..483 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	141.0
Seed ortholog evalue	3.9e-31
Seed eggNOG ortholog	2880.D7G105
EggNOG free text desc.	DDE superfamily endonuclease
EggNOG OGs	2AWDH@1,2RZYI@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	1
Model size	375
Cds size	375
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929716.479845-CDS-H-elongata_contig121707:108..483	1622929716.479845-CDS-H-elongata_contig121707:108..483	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig121707 109..483 -
1691679130.1861453-CDS-H-elongata_contig121707:108..483	1691679130.1861453-CDS-H-elongata_contig121707:108..483	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig121707 109..483 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig121707.1660.1	prot_H-elongata_contig121707.1660.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig121707 109..483 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig121707:109..483-
coding sequence from alignment at H-elongata_contig121707:109..483-

protein sequence of mRNA_H-elongata_contig121707.1660.1

>prot_H-elongata_contig121707.1660.1 ID=prot_H-elongata_contig121707.1660.1|Name=mRNA_H-elongata_contig121707.1660.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
MTVGTSFYVQVVRVANILGLPRVIKTDCGFVADGICTLAVLLYRLAYACT
LKHVRLVFGLSPSCISDIFNFLLHWVHSKWGFLLKLDIDRIAHRLPEFAE
AVHASGAPMTRVWGFVDGTVRPVAR

mRNA from alignment at H-elongata_contig121707:109..483-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig121707.1660.1 ID=mRNA_H-elongata_contig121707.1660.1|Name=mRNA_H-elongata_contig121707.1660.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=375bp|location=Sequence derived from alignment at H-elongata_contig121707:109..483- (Himanthalia elongata Himel1 dioecious)
ATGACTGTTGGCACGTCCTTTTATGTTCAGGTAGTGAGGGTTGCAAACAT
CCTGGGGTTGCCGAGAGTCATCAAGACGGACTGCGGTTTCGTTGCTGATG
GGATATGTACTTTGGCCGTTCTTCTCTACAGACTGGCGTATGCGTGTACT
CTGAAACACGTCCGACTCGTGTTTGGCCTGAGTCCTTCATGTATTAGCGA
CATTTTCAATTTCCTGCTTCACTGGGTCCACTCTAAATGGGGGTTTCTGC
TGAAGCTAGACATCGATCGGATTGCCCATCGGTTGCCTGAGTTTGCAGAG
GCCGTTCATGCTTCAGGTGCTCCGATGACTCGCGTGTGGGGTTTCGTTGA
CGGCACCGTTCGTCCGGTCGCCAGG

Coding sequence (CDS) from alignment at H-elongata_contig121707:109..483-

>mRNA_H-elongata_contig121707.1660.1 ID=mRNA_H-elongata_contig121707.1660.1|Name=mRNA_H-elongata_contig121707.1660.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig121707:109..483- (Himanthalia elongata Himel1 dioecious)
ATGACTGTTGGCACGTCCTTTTATGTTCAGGTAGTGAGGGTTGCAAACAT
CCTGGGGTTGCCGAGAGTCATCAAGACGGACTGCGGTTTCGTTGCTGATG
GGATATGTACTTTGGCCGTTCTTCTCTACAGACTGGCGTATGCGTGTACT
CTGAAACACGTCCGACTCGTGTTTGGCCTGAGTCCTTCATGTATTAGCGA
CATTTTCAATTTCCTGCTTCACTGGGTCCACTCTAAATGGGGGTTTCTGC
TGAAGCTAGACATCGATCGGATTGCCCATCGGTTGCCTGAGTTTGCAGAG
GCCGTTCATGCTTCAGGTGCTCCGATGACTCGCGTGTGGGGTTTCGTTGA
CGGCACCGTTCGTCCGGTCGCCAGGATGACTGTTGGCACGTCCTTTTATG
TTCAGGTAGTGAGGGTTGCAAACATCCTGGGGTTGCCGAGAGTCATCAAG
ACGGACTGCGGTTTCGTTGCTGATGGGATATGTACTTTGGCCGTTCTTCT
CTACAGACTGGCGTATGCGTGTACTCTGAAACACGTCCGACTCGTGTTTG
GCCTGAGTCCTTCATGTATTAGCGACATTTTCAATTTCCTGCTTCACTGG
GTCCACTCTAAATGGGGGTTTCTGCTGAAGCTAGACATCGATCGGATTGC
CCATCGGTTGCCTGAGTTTGCAGAGGCCGTTCATGCTTCAGGTGCTCCGA
TGACTCGCGTGTGGGGTTTCGTTGACGGCACCGTTCGTCCGGTCGCCAGG