mRNA_H-elongata_contig121705.1659.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121705.1659.1
Unique NamemRNA_H-elongata_contig121705.1659.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig121705.1659.1 vs. uniprot
Match: D8LRW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRW3_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 2.920e-56
Identity = 102/133 (76.69%), Postives = 113/133 (84.96%), Query Frame = 1
Query:    1 ERLAKMECWHERGGILVMSYTVFRIMA--SLAGDDGERSRKLILDPGPDVVIADEAHLLKNEEAKVTVAIKKVRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGNLYRFKSYFEAPILNGMLVDSSPEDVK 393
            +RL KME WHERGGILVMSY++F  M       +  ERSR  +LDPGPDVV+ADEAHLLKNE A+VT AIKK+RT+RRVALTGSPLQNNLVEYYTMVDFVRKGMLG L RFK+YFEAPI+NGMLVDSSP DVK
Sbjct: 1918 DRLRKMEQWHERGGILVMSYSIFLNMTRNGAKSERVERSRAFLLDPGPDVVVADEAHLLKNEGAQVTQAIKKIRTRRRVALTGSPLQNNLVEYYTMVDFVRKGMLGTLERFKNYFEAPIVNGMLVDSSPYDVK 2050          
BLAST of mRNA_H-elongata_contig121705.1659.1 vs. uniprot
Match: A0A6H5KF11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF11_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 1.650e-54
Identity = 99/133 (74.44%), Postives = 112/133 (84.21%), Query Frame = 1
Query:    1 ERLAKMECWHERGGILVMSYTVFRIMA--SLAGDDGERSRKLILDPGPDVVIADEAHLLKNEEAKVTVAIKKVRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGNLYRFKSYFEAPILNGMLVDSSPEDVK 393
            +RL KM  WH+RGGILVMSY++F  M       +  ERSR  +LDPGPDVV+ADEAHLLKNE A+VT AIKK+RT+RRVALTGSPLQNNLVEYYTMVDFVR+GMLG L RFK+YFEAPI+NGMLVDSSP DVK
Sbjct: 1798 DRLRKMNQWHKRGGILVMSYSIFLNMTRNGAKSERVERSRAFLLDPGPDVVVADEAHLLKNEGAQVTQAIKKIRTRRRVALTGSPLQNNLVEYYTMVDFVRQGMLGTLERFKNYFEAPIVNGMLVDSSPYDVK 1930          
BLAST of mRNA_H-elongata_contig121705.1659.1 vs. uniprot
Match: UPI00148FBD27 (transcriptional regulator ATRX-like n=1 Tax=Notolabrus celidotus TaxID=1203425 RepID=UPI00148FBD27)

HSP 1 Score: 137 bits (346), Expect = 5.450e-35
Identity = 61/136 (44.85%), Postives = 100/136 (73.53%), Query Frame = 1
Query:    1 ERLAKMECWHERGGILVMSYTVFRIMA---SLAGDDGERS-RKLILDPGPDVVIADEAHLLKNEEAKVTVAIKKVRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGNLYRFKSYFEAPILNGMLVDSSPEDVKV 396
            ER+  ++ W   GG+++M Y ++R ++    ++  DG++  R+L++DPGPD+V+ DE H+LKNE +K++ A+  ++T+RRV LTG+PLQNNL EY+ MV+F++K +LG+L  F++ F  PI NG   DS+P+DV+V
Sbjct: 1123 ERIRALQKWQREGGVIIMGYEMYRNLSLAQKISNVDGKKEIRRLLVDPGPDIVVCDEGHILKNESSKISKAMNAIKTRRRVVLTGTPLQNNLTEYHCMVNFIKKNLLGSLKEFRNRFINPIQNGQCADSTPKDVRV 1258          
BLAST of mRNA_H-elongata_contig121705.1659.1 vs. uniprot
Match: A0A388M5Y6_CHABU (ATP-dependent helicase ATRX n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M5Y6_CHABU)

HSP 1 Score: 137 bits (346), Expect = 5.570e-35
Identity = 66/134 (49.25%), Postives = 95/134 (70.90%), Query Frame = 1
Query:    4 RLAKMECWHERGGILVMSYTVFRIMASLAGDDGERSR----KLILDPGPDVVIADEAHLLKNEEAKVTVAIKKVRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGNLYRFKSYFEAPILNGMLVDSSPEDVK 393
            R   +  WH  GG++++ Y  FR ++      G++ R    + + DPGPD++I DEAH++KNE+A +T A+K VR++RR+ALTGSPLQNNL+EYY MVDFVR+G LG    F++ F+ PI NG L DS+P+DV+
Sbjct: 2803 RAVLLSKWHVNGGVMLVGYAAFRNLSMGRNVKGKKIRDSMVRSLQDPGPDMLICDEAHMIKNEKADITQALKLVRSRRRIALTGSPLQNNLMEYYCMVDFVREGFLGKPKDFRNRFQNPITNGQLADSTPKDVR 2936          
BLAST of mRNA_H-elongata_contig121705.1659.1 vs. uniprot
Match: UPI001FB0387A (transcriptional regulator ATRX n=2 Tax=Hippoglossus TaxID=8266 RepID=UPI001FB0387A)

HSP 1 Score: 137 bits (345), Expect = 7.450e-35
Identity = 61/136 (44.85%), Postives = 97/136 (71.32%), Query Frame = 1
Query:    1 ERLAKMECWHERGGILVMSYTVFRIMASLAGDDGERSR----KLILDPGPDVVIADEAHLLKNEEAKVTVAIKKVRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGNLYRFKSYFEAPILNGMLVDSSPEDVKV 396
            ERL  ++ W   GG+++M Y ++RI++S    + E  +    K+++DPGPD VI DE H+L+NE + ++ A+  +RT+RRV LTG+P+QNNLVEY+ MV+F++K +LG+L  F++ F  PI NG   DS+P+DV++
Sbjct: 1201 ERLLALQAWQREGGVMIMGYELYRILSSAKNMNNEECKTQLKKILVDPGPDFVICDEGHILRNESSGISKALNGIRTRRRVVLTGTPMQNNLVEYHCMVNFIKKNLLGSLGEFRNRFINPIENGQCADSTPKDVRI 1336          
BLAST of mRNA_H-elongata_contig121705.1659.1 vs. uniprot
Match: UPI00097D0012 (transcriptional regulator ATRX-like isoform X1 n=2 Tax=Paralichthys olivaceus TaxID=8255 RepID=UPI00097D0012)

HSP 1 Score: 135 bits (340), Expect = 3.510e-34
Identity = 62/136 (45.59%), Postives = 99/136 (72.79%), Query Frame = 1
Query:    1 ERLAKMECWHERGGILVMSYTVFRIMASLAGDDGERSRK----LILDPGPDVVIADEAHLLKNEEAKVTVAIKKVRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGNLYRFKSYFEAPILNGMLVDSSPEDVKV 396
            ERL  ++ WH  GG+++M Y ++RI+ SLA +  E  +K    +++DPGPD V+ DE H+L+N+ + ++ A+  +RT+RRV LTG+P+QNNLVEY+ MV+F++K +LG+L  F++ F  PI NG   DS+P+DV++
Sbjct: 1214 ERLRALQEWHREGGVMIMGYDIYRIL-SLAKNMNEEWKKQLKTILVDPGPDFVVCDEGHILRNDSSGISKALNGIRTRRRVVLTGTPMQNNLVEYHCMVNFIKKNLLGSLGEFRNRFINPIENGQCADSTPKDVRI 1348          
BLAST of mRNA_H-elongata_contig121705.1659.1 vs. uniprot
Match: UPI000854380D (transcriptional regulator ATRX-like n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854380D)

HSP 1 Score: 125 bits (314), Expect = 5.910e-34
Identity = 59/136 (43.38%), Postives = 93/136 (68.38%), Query Frame = 1
Query:    1 ERLAKMECWHERGGILVMSYTVFRIMASLAGDDGERSRKL----ILDPGPDVVIADEAHLLKNEEAKVTVAIKKVRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGNLYRFKSYFEAPILNGMLVDSSPEDVKV 396
            ER   M+ WH+ GG+LV+ Y ++R +        ++ ++L    ++DPGPD V+ DE H+LKNE + ++ A+  +RTKRR+ LTG+PLQNNLVEY+ MV+F+++ +LG++  F++ F  PI NG   DS+  DV+V
Sbjct:   12 ERGYMMQRWHDNGGVLVLGYEMYRNLTQGRNVKSKKLKELYQKTLVDPGPDFVVCDEGHVLKNEASAISKAMNSIRTKRRIILTGTPLQNNLVEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRV 147          
BLAST of mRNA_H-elongata_contig121705.1659.1 vs. uniprot
Match: A0A3B4ZYT5_9TELE (DNA helicase n=2 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B4ZYT5_9TELE)

HSP 1 Score: 134 bits (338), Expect = 6.520e-34
Identity = 60/136 (44.12%), Postives = 101/136 (74.26%), Query Frame = 1
Query:    1 ERLAKMECWHERGGILVMSYTVFRIMA---SLAGDDGERSRK-LILDPGPDVVIADEAHLLKNEEAKVTVAIKKVRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGNLYRFKSYFEAPILNGMLVDSSPEDVKV 396
            ER+  ++ WH+ GG+++MSY ++RI++   S+  ++ ++  K  ++DPGPD V+ DE H+L+NE + ++ A+  ++T+RR+ LTG+PLQNNLVEY+ MV+F++K +LG+L  F++ F  PI NG   DS+P+DV+V
Sbjct: 1194 ERVRALQQWHKHGGVMIMSYELYRILSLGNSIKNEEWKKELKSALVDPGPDFVVCDEGHILRNERSNISKAMNAIKTQRRLVLTGTPLQNNLVEYHCMVNFIKKNLLGSLGEFRNRFINPIQNGQCADSTPKDVRV 1329          
BLAST of mRNA_H-elongata_contig121705.1659.1 vs. uniprot
Match: UPI001939A942 (transcriptional regulator ATRX homolog n=1 Tax=Styela clava TaxID=7725 RepID=UPI001939A942)

HSP 1 Score: 133 bits (335), Expect = 1.620e-33
Identity = 61/134 (45.52%), Postives = 94/134 (70.15%), Query Frame = 1
Query:    1 ERLAKMECWHERGGILVMSYTVFRIMASLAGDDGERS--RKLILDPGPDVVIADEAHLLKNEEAKVTVAIKKVRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGNLYRFKSYFEAPILNGMLVDSSPEDVKV 396
            ER++ +  W + GG+L++ Y ++RIM +     G +    + ++DPGPDVV+ DE H+LKN  + ++  I K+RTKRR+ LTG+PLQNNL+EY+ MVDFV+  +LG+L  F++ F  PI+NG  +DS+  DVK+
Sbjct:  358 ERVSMLRLWRKNGGVLILGYDMYRIMTTKIRYSGWKKTVHECLVDPGPDVVVCDEGHMLKNATSHISKQISKMRTKRRLVLTGTPLQNNLIEYHCMVDFVKPDLLGSLKEFRNRFVNPIINGQHIDSTDRDVKI 491          
BLAST of mRNA_H-elongata_contig121705.1659.1 vs. uniprot
Match: H2YE12_CIOSA (Uncharacterized protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2YE12_CIOSA)

HSP 1 Score: 132 bits (331), Expect = 1.710e-33
Identity = 62/132 (46.97%), Postives = 93/132 (70.45%), Query Frame = 1
Query:    1 ERLAKMECWHERGGILVMSYTVFRIMASLAGDDGERSRKLILDPGPDVVIADEAHLLKNEEAKVTVAIKKVRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGNLYRFKSYFEAPILNGMLVDSSPEDVKV 396
            ERL  ME W + GG++V+ Y +FR++AS       R   L+LDPGPD+V+ DE H LKN E+ +++ + K++TKRR+ LTG+PLQNNL+EY  MV+FV+  +LG++  F++ F  PI NG  +DS+  DV++
Sbjct:  108 ERLKVMEKWSKTGGVMVLGYDMFRLLAS------GRFAHLLLDPGPDIVVCDEGHKLKNSESNISIVMNKLKTKRRLVLTGTPLQNNLIEYQCMVNFVKPNLLGSIKEFRNRFVNPISNGQHLDSTERDVRL 233          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121705.1659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRW3_ECTSI2.920e-5676.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF11_9PHAE1.650e-5474.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00148FBD275.450e-3544.85transcriptional regulator ATRX-like n=1 Tax=Notola... [more]
A0A388M5Y6_CHABU5.570e-3549.25ATP-dependent helicase ATRX n=1 Tax=Chara braunii ... [more]
UPI001FB0387A7.450e-3544.85transcriptional regulator ATRX n=2 Tax=Hippoglossu... [more]
UPI00097D00123.510e-3445.59transcriptional regulator ATRX-like isoform X1 n=2... [more]
UPI000854380D5.910e-3443.38transcriptional regulator ATRX-like n=1 Tax=Nanora... [more]
A0A3B4ZYT5_9TELE6.520e-3444.12DNA helicase n=2 Tax=Stegastes partitus TaxID=1441... [more]
UPI001939A9421.620e-3345.52transcriptional regulator ATRX homolog n=1 Tax=Sty... [more]
H2YE12_CIOSA1.710e-3346.97Uncharacterized protein n=1 Tax=Ciona savignyi Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121705contigH-elongata_contig121705:748..1438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.8
Seed ortholog evalue6.3e-48
Seed eggNOG ortholog2880.D8LRW3
KEGG koko:K06767,ko:K10779,ko:K10875,ko:K10876
KEGG Pathwayko03440,map03440
EggNOG free text desc.ATP binding
EggNOG OGsCOG0553@1,KOG1015@2759,KOG1016@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03036,ko03400,ko04516
Hectar predicted targeting categoryother localisation
Exons2
Model size414
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121705.1659.1prot_H-elongata_contig121705.1659.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121705 763..1438 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929716.3988006-UTR-H-elongata_contig121705:747..7621622929716.3988006-UTR-H-elongata_contig121705:747..762Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121705 748..762 +
1691679130.1342685-UTR-H-elongata_contig121705:747..7621691679130.1342685-UTR-H-elongata_contig121705:747..762Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121705 748..762 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929716.4182985-CDS-H-elongata_contig121705:762..9361622929716.4182985-CDS-H-elongata_contig121705:762..936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121705 763..936 +
1691679130.1460075-CDS-H-elongata_contig121705:762..9361691679130.1460075-CDS-H-elongata_contig121705:762..936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121705 763..936 +
1622929716.4307413-CDS-H-elongata_contig121705:1213..14381622929716.4307413-CDS-H-elongata_contig121705:1213..1438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121705 1214..1438 +
1691679130.1675072-CDS-H-elongata_contig121705:1213..14381691679130.1675072-CDS-H-elongata_contig121705:1213..1438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121705 1214..1438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121705.1659.1

>prot_H-elongata_contig121705.1659.1 ID=prot_H-elongata_contig121705.1659.1|Name=mRNA_H-elongata_contig121705.1659.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MECWHERGGILVMSYTVFRIMASLAGDDGERSRKLILDPGPDVVIADEAH
LLKNEEAKVTVAIKKVRTKRRVALTGSPLQNNLVEYYTMVDFVRKGMLGN
LYRFKSYFEAPILNGMLVDSSPEDVKVRGVCY*
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mRNA from alignment at H-elongata_contig121705:748..1438+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121705.1659.1 ID=mRNA_H-elongata_contig121705.1659.1|Name=mRNA_H-elongata_contig121705.1659.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=691bp|location=Sequence derived from alignment at H-elongata_contig121705:748..1438+ (Himanthalia elongata Himel1 dioecious)
GAACGGCTCGCGAAGATGGAGTGCTGGCACGAGCGAGGGGGGATTCTCGT TATGTCCTACACCGTCTTCAGGATTATGGCCTCTCTGGCCGGCGACGACG GGGAACGCTCCCGGAAACTTATCTTGGATCCCGGGCCTGATGTGGTCATA GCGGACGAGGCCCATCTGCTCAAGAATGAAGAGGCGAAGGTGCGCGCCGC CCCCATTCACGGCCCCGATCAGCGAAAAAATGCATTCCAGAACGCGCGGG CTCCGTTGGATCGCTCGATTCTTGCGGCAGTTTTTTGTTTGTTTTATCTC CGCTGGCGTAGTCGAAGGATACTGGTTTACAGGGGTCTCAAAAGAGTTTT GGTACACCACCCGCGCTTTGTTCATGAAGGGTGTAAACGTTAGAGTTTGT ATGGTGGGGGGCGTTTTTTTGTTGGGGCGGGGGGTGTGGTTGGATCGGCG TTGTCGGGCGCTCCAGGTAACGGTGGCCATCAAGAAGGTGCGGACCAAGA GGCGCGTGGCGCTGACGGGGTCGCCTTTGCAGAACAACCTCGTGGAGTAC TACACCATGGTAGACTTTGTCCGGAAGGGGATGCTCGGAAATCTGTACCG TTTCAAGAGCTACTTTGAGGCCCCGATCCTGAACGGCATGCTCGTCGACA GCTCGCCCGAGGACGTTAAGGTGAGGGGTGTATGCTATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig121705:748..1438+

>mRNA_H-elongata_contig121705.1659.1 ID=mRNA_H-elongata_contig121705.1659.1|Name=mRNA_H-elongata_contig121705.1659.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig121705:748..1438+ (Himanthalia elongata Himel1 dioecious)
ATGGAGTGCTGGCACGAGCGAGGGGGGATTCTCGTTATGTCCTACACCGT
CTTCAGGATTATGGCCTCTCTGGCCGGCGACGACGGGGAACGCTCCCGGA
AACTTATCTTGGATCCCGGGCCTGATGTGGTCATAGCGGACGAGGCCCAT
CTGCTCAAGAATGAAGAGGCGAAGATGGAGTGCTGGCACGAGCGAGGGGG
GATTCTCGTTATGTCCTACACCGTCTTCAGGATTATGGCCTCTCTGGCCG
GCGACGACGGGGAACGCTCCCGGAAACTTATCTTGGATCCCGGGCCTGAT
GTGGTCATAGCGGACGAGGCCCATCTGCTCAAGAATGAAGAGGCGAAGGT
AACGGTGGCCATCAAGAAGGTGCGGACCAAGAGGCGCGTGGCGCTGACGG
GGTCGCCTTTGCAGAACAACCTCGTGGAGTACTACACCATGGTAGACTTT
GTCCGGAAGGGGATGCTCGGAAATCTGTACCGTTTCAAGAGCTACTTTGA
GGCCCCGATCCTGAACGGCATGCTCGTCGACAGCTCGCCCGAGGACGTTA
AGGTGAGGGGTGTATGCTATTGAGTAACGGTGGCCATCAAGAAGGTGCGG
ACCAAGAGGCGCGTGGCGCTGACGGGGTCGCCTTTGCAGAACAACCTCGT
GGAGTACTACACCATGGTAGACTTTGTCCGGAAGGGGATGCTCGGAAATC
TGTACCGTTTCAAGAGCTACTTTGAGGCCCCGATCCTGAACGGCATGCTC
GTCGACAGCTCGCCCGAGGACGTTAAGGTGAGGGGTGTATGCTATTGA
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