mRNA_H-elongata_contig12169.1656.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12169.1656.1
Unique NamemRNA_H-elongata_contig12169.1656.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12169.1656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12169contigH-elongata_contig12169:5077..8664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size3340
Cds size1719
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12169.1656.1prot_H-elongata_contig12169.1656.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12169 5167..7133 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929716.1265035-UTR-H-elongata_contig12169:5076..51661622929716.1265035-UTR-H-elongata_contig12169:5076..5166Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12169 5077..5166 +
1691679130.0749698-UTR-H-elongata_contig12169:5076..51661691679130.0749698-UTR-H-elongata_contig12169:5076..5166Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12169 5077..5166 +
1622929716.2278392-UTR-H-elongata_contig12169:7133..86641622929716.2278392-UTR-H-elongata_contig12169:7133..8664Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12169 7134..8664 +
1691679130.0974073-UTR-H-elongata_contig12169:7133..86641691679130.0974073-UTR-H-elongata_contig12169:7133..8664Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12169 7134..8664 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929716.1415362-CDS-H-elongata_contig12169:5166..51691622929716.1415362-CDS-H-elongata_contig12169:5166..5169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12169 5167..5169 +
1691679130.0824125-CDS-H-elongata_contig12169:5166..51691691679130.0824125-CDS-H-elongata_contig12169:5166..5169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12169 5167..5169 +
1622929716.1589692-CDS-H-elongata_contig12169:5417..71331622929716.1589692-CDS-H-elongata_contig12169:5417..7133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12169 5418..7133 +
1691679130.0901527-CDS-H-elongata_contig12169:5417..71331691679130.0901527-CDS-H-elongata_contig12169:5417..7133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12169 5418..7133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12169.1656.1

>prot_H-elongata_contig12169.1656.1 ID=prot_H-elongata_contig12169.1656.1|Name=mRNA_H-elongata_contig12169.1656.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=573bp
MVLESPVDMALCQNMLNASGRLVAQPSAAEANSGPGLAALGVLVREISGN
DKRWLRSTKELRLVSLQLCNACRRTLYFRVWVERGTPCSLWTTTEIAEAD
PRSSRGVGRGIWPRLRRFPRLSGVRAAEVVWDLPVGDLSAARNFLEGAVR
LQFGFRFDDPLQGCSPLLPDTLLVLDLGPRFQHDVLGVSWPAKLRELNFG
ASFNGSILGIALPSGLRRLTFGASFNKPVAGVAWPASLLILEFGQKFDQP
VAIEGVSWPERLESLSFGRDFSHDLGVVSETNTGESTIGTTVVTGPACRG
QLWWPASLRRLVLSEGFWQPIDTVVWPLALEELHLDCVSVRRDTGVVTLG
AASTTRSSIVWPSGLKRLTLDFTFHQPVEDVPLPPALEELTFGNKFNQSI
GGVLWPQGLKQISFGASFNQNIDGVIFPPRVERLTFGYCFDQSLERVWWP
PALQRLVFRDHFDQSIDDVAWPASLKVLQFGCRFNQPLSGGPSSSWPPPR
LQRLILGKKFDQPAEHVVLPPTLVFLEFGEGCRQRLRKIEWPRGLREIVV
RKERTILSHQGLDGLPKGCKIR*
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mRNA from alignment at H-elongata_contig12169:5077..8664+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12169.1656.1 ID=mRNA_H-elongata_contig12169.1656.1|Name=mRNA_H-elongata_contig12169.1656.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3588bp|location=Sequence derived from alignment at H-elongata_contig12169:5077..8664+ (Himanthalia elongata Himel1 dioecious)
AAGCAGGAAACGGAGTGCCAGCGTATGCGCACGCAAGCTGTAAGTGGCCC
CGGGTCGCAGGGTGGGGCAACGAACGCGAAGGATTGAATCATGGTAAGCT
CCGCTAGGTTTCAACGGATGACGCCCACGTCGATGGTAGGAACGCAAGCC
ACGCGACGGTGCTTCTATCACCCGCGGGCTTCTGTGCAAGAGGCAAACGA
CCAGTCGACCCTGACGAGCAAAGGAAGACGTGAGCGTGCTTGTGCATGCT
TGTTTCTTGTTTGTTTTTAAACGGTTATCTTTTGTTCCATACGTCCTCCG
ATCCCTCTTCTATTTGTTTGGGGCTTCTTGTCTCCCGCCAGGTGCTGGAA
TCTCCGGTGGACATGGCCCTCTGCCAGAACATGCTGAATGCCTCGGGGCG
CCTTGTCGCTCAACCCTCCGCCGCGGAAGCGAACAGTGGTCCGGGCCTCG
CTGCTCTGGGAGTTCTCGTCAGAGAAATCAGCGGCAACGACAAGCGGTGG
CTACGGTCAACGAAAGAACTGAGGCTCGTATCCCTCCAGCTTTGTAATGC
CTGTCGGCGTACTCTGTACTTTCGAGTTTGGGTGGAACGCGGCACACCTT
GCTCACTTTGGACCACGACCGAGATCGCCGAGGCCGATCCTCGGAGTTCC
AGGGGCGTTGGAAGGGGTATCTGGCCTCGTCTGCGCCGCTTTCCCCGTCT
CTCGGGCGTTCGAGCGGCCGAGGTTGTCTGGGATCTCCCCGTCGGAGACC
TCTCCGCCGCCAGAAATTTTCTGGAAGGCGCAGTGCGCTTGCAGTTCGGC
TTTCGCTTCGACGACCCTCTTCAAGGGTGCTCCCCTCTCTTGCCGGACAC
GCTCCTGGTTCTGGATCTCGGGCCGAGATTCCAACACGACGTCTTGGGGG
TGTCGTGGCCCGCGAAGCTCCGGGAGCTGAACTTTGGGGCGTCCTTCAAC
GGCTCCATCTTAGGCATCGCCCTACCTTCGGGCCTGCGGCGGCTGACGTT
TGGCGCGAGCTTTAACAAGCCGGTCGCAGGCGTCGCCTGGCCGGCCTCGC
TGCTGATACTCGAGTTCGGACAGAAGTTCGACCAACCGGTGGCGATCGAG
GGGGTGTCCTGGCCCGAGCGGCTGGAATCGCTTTCTTTCGGCAGAGATTT
CAGCCACGACCTTGGGGTTGTTTCGGAGACCAACACGGGGGAATCGACGA
TAGGAACGACGGTGGTGACAGGGCCAGCTTGCCGTGGTCAATTATGGTGG
CCCGCGTCTCTTCGGCGACTGGTGTTGTCCGAGGGGTTCTGGCAGCCGAT
CGACACCGTGGTGTGGCCGCTCGCGCTCGAAGAGCTTCACCTTGACTGTG
TCAGCGTACGAAGAGACACGGGGGTCGTGACCTTAGGGGCTGCAAGCACT
ACGCGCAGCTCGATCGTCTGGCCATCGGGGCTCAAGAGGCTCACTCTCGA
CTTCACCTTTCACCAGCCTGTGGAAGACGTGCCGCTTCCTCCCGCCCTGG
AAGAGCTGACCTTTGGGAACAAATTTAATCAGTCGATAGGCGGCGTCCTG
TGGCCTCAAGGCTTGAAGCAAATCAGCTTCGGTGCCTCGTTCAACCAGAA
CATCGATGGCGTAATTTTTCCGCCCCGCGTGGAGCGACTCACATTCGGGT
ACTGTTTCGACCAGAGCCTGGAGCGAGTCTGGTGGCCGCCGGCATTGCAG
CGTCTCGTGTTCCGTGATCACTTTGACCAGTCGATTGATGACGTCGCTTG
GCCGGCTTCCCTGAAGGTTCTTCAGTTCGGTTGTCGGTTTAACCAGCCCC
TCTCAGGCGGACCTTCTTCGTCTTGGCCACCACCGCGCCTGCAGCGGCTG
ATTCTCGGCAAGAAGTTCGATCAGCCCGCCGAGCACGTTGTCTTACCCCC
GACCCTGGTTTTCCTGGAGTTTGGGGAGGGGTGTAGGCAGCGGCTCCGGA
AGATCGAGTGGCCCCGCGGCTTAAGGGAGATCGTTGTGAGGAAGGAGAGA
ACGATATTATCTCACCAGGGGCTAGATGGCTTGCCGAAAGGTTGCAAAAT
TCGGTGAAATGGCACGTTACCGTGGGAGGAGCCCTGTTTTTTTCGAGCAC
GGTGTGCCTCGGCCGTTCCGAAAATTCTGGCTTGTTATCTCGGGAGGTAA
GAGAGAAGGGACAAAGAAAAGGAGGCGAGGGGACTAAGAGGGTTCTCGCA
GTGACACCCCTTGTGGCTATTGTTATTTTTTCTCTAAGTGTTGTCCAGGG
GAAAGGCAGGCGCGGGCGAAGCCGATGGGCGCAGTGACCTTCCTTGCAAA
TAGCGTTCCGGCCGCTTGCCGCTGTCGTAACGGCGATAGCTCAATGTTCT
TTTCCTTTTTTAGGCCACCTGGTAAAAGCGTGCACCCCACAAATAAACGT
ACATTGATAGCTAATGTTGGTGGTATAGAAAACATCAGTGGGAGAGCGAA
ATTTTCAGTGGGGCAGCACGCTTTGAAGTGGCTAAGAGACGATACTTGAA
GCGCACCGTCGTCGTTGGCAGATAGACGATGCAAAAGGGGTGTCGGTCAG
AACAAAAGCGACGAGATGGGTTGAGATGATGACGAGCGACGAACAGAGAC
AAGAGACACGCCATAAATATTACTAGTATCACACAGGGCACATACAGTAT
TAATATTAATGATGACCGGCAGGCTCGAGGCTTGGATAAAGCGGTTCGTG
TTAGGCAAAATACCAAAAGTCTAGTAGCGAGCTTGTTGTACGCAGTTAGT
TGTTGTTGTAGCTGGAGAGCGATTATAACCGTTCGTTCCAAGAATGACAA
GGTGTTGAACGGGTAAGGTCGCCAATCGATATCAGGATCGGGTAGGGGAT
GTGTTTGTGTCCTGGTAGGGGGAGGGGGGGCATCCTCCCTTATTGTGCTC
GACGCTTGATTTGCCGTGAGAATTCGAACCTTTCTGTACAAGCCAAGTGT
TGTGTGCATTGTTCAAATAGTATCAAGTAGTAGAGTATGTGTTTGATGCG
ACTCCGGTATCAACCAATTCGAGAGTTTTTCTCTGAAAAAAACATTTTTG
CCGTGAACATAATACTATTAGCCAATAACTATTAGTACCTCCATAACTTG
CTTCTGAAGAGAGTTAATAAAAAATCAAATTTATGTGTTTTTTTATGAGA
GAAGTCAAAAGACATTGAATTGCGCGTTTGTCAGTCTTTGGTCGGGCCAT
GTCCGGTGCCGCAACGTACGACGACGGCCTCTTCTCTTCTGCCAAAAATA
TACAAATCAATCAATATTTGAGCGAGAATCATTTACCGTACGTAGCCTTT
GGGTGTATTTCTCTTGATTGGTCCTATCTTTTAGAAGGAGAAAAATATCC
CTGTTTTATGCTAAGAGCAACACGCCAGTGATGACTCGCCCCTTAATGGC
GCAAAGAAGGTGCGAAGAAGGTGTGGACGTTCGCAAGTTTTGAATGAGTT
CATACGTTTTTTTAATGAAAAGTTGTAACCAGGGAGGTCAATTTTGCATC
TGAGAGCAACTATTTATAGCCGGTTGGTTACTGAGGTACAAATGTTCGGA
GGGTTGGAATGAGTTCATATGTTTTAAAACCTTTTGGG
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Coding sequence (CDS) from alignment at H-elongata_contig12169:5077..8664+

>mRNA_H-elongata_contig12169.1656.1 ID=mRNA_H-elongata_contig12169.1656.1|Name=mRNA_H-elongata_contig12169.1656.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3438bp|location=Sequence derived from alignment at H-elongata_contig12169:5077..8664+ (Himanthalia elongata Himel1 dioecious)
ATGATGGTGCTGGAATCTCCGGTGGACATGGCCCTCTGCCAGAACATGCT
GAATGCCTCGGGGCGCCTTGTCGCTCAACCCTCCGCCGCGGAAGCGAACA
GTGGTCCGGGCCTCGCTGCTCTGGGAGTTCTCGTCAGAGAAATCAGCGGC
AACGACAAGCGGTGGCTACGGTCAACGAAAGAACTGAGGCTCGTATCCCT
CCAGCTTTGTAATGCCTGTCGGCGTACTCTGTACTTTCGAGTTTGGGTGG
AACGCGGCACACCTTGCTCACTTTGGACCACGACCGAGATCGCCGAGGCC
GATCCTCGGAGTTCCAGGGGCGTTGGAAGGGGTATCTGGCCTCGTCTGCG
CCGCTTTCCCCGTCTCTCGGGCGTTCGAGCGGCCGAGGTTGTCTGGGATC
TCCCCGTCGGAGACCTCTCCGCCGCCAGAAATTTTCTGGAAGGCGCAGTG
CGCTTGCAGTTCGGCTTTCGCTTCGACGACCCTCTTCAAGGGTGCTCCCC
TCTCTTGCCGGACACGCTCCTGGTTCTGGATCTCGGGCCGAGATTCCAAC
ACGACGTCTTGGGGGTGTCGTGGCCCGCGAAGCTCCGGGAGCTGAACTTT
GGGGCGTCCTTCAACGGCTCCATCTTAGGCATCGCCCTACCTTCGGGCCT
GCGGCGGCTGACGTTTGGCGCGAGCTTTAACAAGCCGGTCGCAGGCGTCG
CCTGGCCGGCCTCGCTGCTGATACTCGAGTTCGGACAGAAGTTCGACCAA
CCGGTGGCGATCGAGGGGGTGTCCTGGCCCGAGCGGCTGGAATCGCTTTC
TTTCGGCAGAGATTTCAGCCACGACCTTGGGGTTGTTTCGGAGACCAACA
CGGGGGAATCGACGATAGGAACGACGGTGGTGACAGGGCCAGCTTGCCGT
GGTCAATTATGGTGGCCCGCGTCTCTTCGGCGACTGGTGTTGTCCGAGGG
GTTCTGGCAGCCGATCGACACCGTGGTGTGGCCGCTCGCGCTCGAAGAGC
TTCACCTTGACTGTGTCAGCGTACGAAGAGACACGGGGGTCGTGACCTTA
GGGGCTGCAAGCACTACGCGCAGCTCGATCGTCTGGCCATCGGGGCTCAA
GAGGCTCACTCTCGACTTCACCTTTCACCAGCCTGTGGAAGACGTGCCGC
TTCCTCCCGCCCTGGAAGAGCTGACCTTTGGGAACAAATTTAATCAGTCG
ATAGGCGGCGTCCTGTGGCCTCAAGGCTTGAAGCAAATCAGCTTCGGTGC
CTCGTTCAACCAGAACATCGATGGCGTAATTTTTCCGCCCCGCGTGGAGC
GACTCACATTCGGGTACTGTTTCGACCAGAGCCTGGAGCGAGTCTGGTGG
CCGCCGGCATTGCAGCGTCTCGTGTTCCGTGATCACTTTGACCAGTCGAT
TGATGACGTCGCTTGGCCGGCTTCCCTGAAGGTTCTTCAGTTCGGTTGTC
GGTTTAACCAGCCCCTCTCAGGCGGACCTTCTTCGTCTTGGCCACCACCG
CGCCTGCAGCGGCTGATTCTCGGCAAGAAGTTCGATCAGCCCGCCGAGCA
CGTTGTCTTACCCCCGACCCTGGTTTTCCTGGAGTTTGGGGAGGGGTGTA
GGCAGCGGCTCCGGAAGATCGAGTGGCCCCGCGGCTTAAGGGAGATCGTT
GTGAGGAAGGAGAGAACGATATTATCTCACCAGGGGCTAGATGGCTTGCC
GAAAGGTTGCAAAATTCGGTGAGTGCTGGAATCTCCGGTGGACATGGCCC
TCTGCCAGAACATGCTGAATGCCTCGGGGCGCCTTGTCGCTCAACCCTCC
GCCGCGGAAGCGAACAGTGGTCCGGGCCTCGCTGCTCTGGGAGTTCTCGT
CAGAGAAATCAGCGGCAACGACAAGCGGTGGCTACGGTCAACGAAAGAAC
TGAGGCTCGTATCCCTCCAGCTTTGTAATGCCTGTCGGCGTACTCTGTAC
TTTCGAGTTTGGGTGGAACGCGGCACACCTTGCTCACTTTGGACCACGAC
CGAGATCGCCGAGGCCGATCCTCGGAGTTCCAGGGGCGTTGGAAGGGGTA
TCTGGCCTCGTCTGCGCCGCTTTCCCCGTCTCTCGGGCGTTCGAGCGGCC
GAGGTTGTCTGGGATCTCCCCGTCGGAGACCTCTCCGCCGCCAGAAATTT
TCTGGAAGGCGCAGTGCGCTTGCAGTTCGGCTTTCGCTTCGACGACCCTC
TTCAAGGGTGCTCCCCTCTCTTGCCGGACACGCTCCTGGTTCTGGATCTC
GGGCCGAGATTCCAACACGACGTCTTGGGGGTGTCGTGGCCCGCGAAGCT
CCGGGAGCTGAACTTTGGGGCGTCCTTCAACGGCTCCATCTTAGGCATCG
CCCTACCTTCGGGCCTGCGGCGGCTGACGTTTGGCGCGAGCTTTAACAAG
CCGGTCGCAGGCGTCGCCTGGCCGGCCTCGCTGCTGATACTCGAGTTCGG
ACAGAAGTTCGACCAACCGGTGGCGATCGAGGGGGTGTCCTGGCCCGAGC
GGCTGGAATCGCTTTCTTTCGGCAGAGATTTCAGCCACGACCTTGGGGTT
GTTTCGGAGACCAACACGGGGGAATCGACGATAGGAACGACGGTGGTGAC
AGGGCCAGCTTGCCGTGGTCAATTATGGTGGCCCGCGTCTCTTCGGCGAC
TGGTGTTGTCCGAGGGGTTCTGGCAGCCGATCGACACCGTGGTGTGGCCG
CTCGCGCTCGAAGAGCTTCACCTTGACTGTGTCAGCGTACGAAGAGACAC
GGGGGTCGTGACCTTAGGGGCTGCAAGCACTACGCGCAGCTCGATCGTCT
GGCCATCGGGGCTCAAGAGGCTCACTCTCGACTTCACCTTTCACCAGCCT
GTGGAAGACGTGCCGCTTCCTCCCGCCCTGGAAGAGCTGACCTTTGGGAA
CAAATTTAATCAGTCGATAGGCGGCGTCCTGTGGCCTCAAGGCTTGAAGC
AAATCAGCTTCGGTGCCTCGTTCAACCAGAACATCGATGGCGTAATTTTT
CCGCCCCGCGTGGAGCGACTCACATTCGGGTACTGTTTCGACCAGAGCCT
GGAGCGAGTCTGGTGGCCGCCGGCATTGCAGCGTCTCGTGTTCCGTGATC
ACTTTGACCAGTCGATTGATGACGTCGCTTGGCCGGCTTCCCTGAAGGTT
CTTCAGTTCGGTTGTCGGTTTAACCAGCCCCTCTCAGGCGGACCTTCTTC
GTCTTGGCCACCACCGCGCCTGCAGCGGCTGATTCTCGGCAAGAAGTTCG
ATCAGCCCGCCGAGCACGTTGTCTTACCCCCGACCCTGGTTTTCCTGGAG
TTTGGGGAGGGGTGTAGGCAGCGGCTCCGGAAGATCGAGTGGCCCCGCGG
CTTAAGGGAGATCGTTGTGAGGAAGGAGAGAACGATATTATCTCACCAGG
GGCTAGATGGCTTGCCGAAAGGTTGCAAAATTCGGTGA
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