mRNA_H-elongata_contig121544.1652.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121544.1652.1
Unique NamemRNA_H-elongata_contig121544.1652.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig121544.1652.1 vs. uniprot
Match: A0A6H5JP79_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JP79_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.390e-28
Identity = 61/99 (61.62%), Postives = 78/99 (78.79%), Query Frame = 1 
Query:    4 AVQGGHNSRPGPLLGNAQILVRLQFPLGFNFVRILFYHG--STWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGL 294
            ++QGGH++ PGPLL NAQ L+RLQFPLG+NF+R+L Y+G  S       LPAF+ L+++M TV VLGT F VYAP+++VVLC FT  KGYARVLRL+GL
Sbjct:  462 SLQGGHHTLPGPLLFNAQYLIRLQFPLGYNFMRMLRYYGTRSASVPALSLPAFQKLMNDMSTVPVLGTGFTVYAPLVLVVLCAFTYYKGYARVLRLVGL 560
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BLAST of mRNA_H-elongata_contig121544.1652.1 vs. uniprot
Match: A0A835ZCR5_9STRA (LMBR1-like membrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCR5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.800e-24
Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = 1 
Query:    1 MAVQGGHNSRPGPLLGNAQILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGL 294
            +A+ G H S PG L+ NAQ LVRLQFPLG+NF+ +L Y         +  AF  L+S M  V +LGT FN+YAP++MVVLCLFT+C GYAR+LR++G+
Sbjct:  410 LALNGPHQSLPGQLMFNAQYLVRLQFPLGYNFLTLLHYEKGM----LQHIAFNKLMSNMSVVPLLGTDFNIYAPLIMVVLCLFTACHGYARLLRMVGI 503
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BLAST of mRNA_H-elongata_contig121544.1652.1 vs. uniprot
Match: A0A835Z6T2_9STRA (LMBR1-like membrane protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6T2_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.560e-23
Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 1 
Query:    4 AVQGGHNSRPGPLLGNAQILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGL 294
            A+ G H S P  L+ NAQ LVRLQFPLG+NFV +L   G       +  AF  L+S M  V +LGT FN+YAP+LMV+LCLFT+C+GYAR+LRL+G+
Sbjct:  472 ALNGPHQSLPRQLIMNAQYLVRLQFPLGYNFVTLLGPEGGA----LQRIAFNKLMSNMAVVPLLGTDFNIYAPLLMVLLCLFTACRGYARLLRLVGI 564
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BLAST of mRNA_H-elongata_contig121544.1652.1 vs. uniprot
Match: A0A7S4D6Y9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6Y9_HETAK)

HSP 1 Score: 88.2 bits (217), Expect = 4.280e-20
Identity = 47/96 (48.96%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:    4 AVQGGHNSRPGPLLGNAQILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLG 291
            ++Q   +S+P  LL NAQ ++RLQFPLG++F+ +L +H +T        + +LL+S M  V +LGT+FN YAP++MVVLC FT   GYAR+L LLG
Sbjct:   65 SLQAPRSSQPSALLFNAQQMIRLQFPLGYSFLLMLNFHRTT--------SLQLLMSNMTVVPILGTSFNHYAPLVMVVLCAFTLFNGYARLLGLLG 152
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BLAST of mRNA_H-elongata_contig121544.1652.1 vs. uniprot
Match: A0A7S2V555_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V555_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 9.110e-19
Identity = 45/97 (46.39%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:    4 AVQGGHNSRPGPLLGNAQILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGL 294
            ++Q  H S+   LL NAQ ++RLQFPLG+NF+ +L Y   T        A +LL++ M  V +LGT+F++YAP ++++LC FT  +GY R+LRLLGL
Sbjct:   27 SLQAPHQSQSVALLFNAQQMIRLQFPLGYNFLLMLKYSRPT--------ALQLLMNNMSVVPILGTSFSIYAPAILLLLCFFTLFQGYTRLLRLLGL 115
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BLAST of mRNA_H-elongata_contig121544.1652.1 vs. uniprot
Match: W7TPT9_9STRA (LMBR1-like membrane protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPT9_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.310e-17
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:    4 AVQGGHNSRPGPLLGNAQILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLG 291
            ++QG H S  GPLL NAQ L+RLQFPL +NF+ +L    S      +  AF  L+S M  V +LG  F+VYAP++MVVL  FT  +GYAR+LRL+G
Sbjct:  495 SLQGPHQSLAGPLLVNAQYLIRLQFPLAYNFLLMLRSPSS------KQTAFRHLMSNMAVVPLLGRGFSVYAPLMMVVLAAFTYFRGYARLLRLVG 584
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BLAST of mRNA_H-elongata_contig121544.1652.1 vs. uniprot
Match: A0A7R9Z808_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z808_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 6.990e-17
Identity = 44/84 (52.38%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:   40 LLGNAQILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLG 291
            L+ NAQ LVRLQFPLG+N++ +L Y  S+        AF  ++S+M+TV   GT+F+VYAP+L++ LC FT C GYAR+L LLG
Sbjct:   74 LVFNAQYLVRLQFPLGYNYLLMLKYDTSS-----TTCAFSRVMSDMETVPFFGTSFSVYAPLLILALCGFTLCNGYARLLSLLG 152
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BLAST of mRNA_H-elongata_contig121544.1652.1 vs. uniprot
Match: A0A7S2VYF6_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VYF6_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.490e-16
Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:   16 GHNSRPG-PLLGNAQILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLG 291
            GH    G  LL +AQ LVRLQFPLG+N++ +L Y  S+        AF  L+S M TV  LGT+F+VYAP+L++ LC FT C GY R++ LLG
Sbjct:   86 GHRQSHGVALLFSAQYLVRLQFPLGYNYLLMLKYDTSS-----TTCAFSNLMSNMSTVPFLGTSFSVYAPLLILCLCGFTLCNGYPRLVALLG 173
[Close]
BLAST of mRNA_H-elongata_contig121544.1652.1 vs. uniprot
Match: A0A7S2A7R7_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A7R7_TRICV)

HSP 1 Score: 82.0 bits (201), Expect = 3.130e-16
Identity = 47/94 (50.00%), Postives = 62/94 (65.96%), Query Frame = 1 
Query:   16 GHNSRPG-PLLGNAQILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGL 294
            G    PG  L+ NAQ LVRLQFPLG+N++ +L Y      T     AF  ++S M+TV   GT+F+VYAP+L++ LC FT C GYAR+L LLG+
Sbjct:  281 GCRQSPGVALIFNAQYLVRLQFPLGYNYLMMLKYD-----TASTTCAFSRVMSHMETVPFFGTSFSVYAPLLILALCGFTLCNGYARLLSLLGM 369
[Close]
BLAST of mRNA_H-elongata_contig121544.1652.1 vs. uniprot
Match: A0A7S2XKF6_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XKF6_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 7.410e-16
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:   16 GHNSRPG-PLLGNAQILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGL 294
            GHN   G  L+ NAQ LVRLQFPLG+N++ +L Y  S+        AF  ++S+M TV   GT+F+VYAP++++ LC FT C GY R+L +LG+
Sbjct:  462 GHNQSIGVALVFNAQYLVRLQFPLGYNYLLMLKYDTSS-----TNCAFVHVMSDMSTVPFFGTSFSVYAPLMIIALCCFTLCNGYPRLLAVLGI 550
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121544.1652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JP79_9PHAE1.390e-2861.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZCR5_9STRA3.800e-2454.08LMBR1-like membrane protein n=1 Tax=Tribonema minu... [more]
A0A835Z6T2_9STRA2.560e-2355.67LMBR1-like membrane protein-domain-containing prot... [more]
A0A7S4D6Y9_HETAK4.280e-2048.96Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2V555_9STRA9.110e-1946.39Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TPT9_9STRA1.310e-1751.04LMBR1-like membrane protein n=3 Tax=Monodopsidacea... [more]
A0A7R9Z808_9STRA6.990e-1752.38Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2VYF6_9STRA2.490e-1650.54Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2A7R7_TRICV3.130e-1650.00Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2XKF6_9STRA7.410e-1647.87Hypothetical protein n=2 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121544contigH-elongata_contig121544:75..540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue4.7e-24
Seed eggNOG ortholog2880.D7FY43
Preferred nameLMBRD2
KEGG koko:K10393,ko:K16831
GOsGO:0001726,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005884,GO:0005886,GO:0006810,GO:0006897,GO:0006928,GO:0006935,GO:0008150,GO:0009605,GO:0009987,GO:0015629,GO:0016020,GO:0016043,GO:0016192,GO:0016477,GO:0030030,GO:0031252,GO:0031268,GO:0031941,GO:0032991,GO:0040011,GO:0042221,GO:0042330,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0048870,GO:0050896,GO:0051179,GO:0051234,GO:0051674,GO:0071840,GO:0071944,GO:0098657,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:0120036
EggNOG free text desc.LMBR1-like membrane protein
EggNOG OGsKOG2296@1,KOG2296@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929715.6187193-CDS-H-elongata_contig121544:74..3351622929715.6187193-CDS-H-elongata_contig121544:74..335Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121544 75..335 +
1691679129.8502707-CDS-H-elongata_contig121544:74..3351691679129.8502707-CDS-H-elongata_contig121544:74..335Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121544 75..335 +
1622929715.633046-CDS-H-elongata_contig121544:507..5401622929715.633046-CDS-H-elongata_contig121544:507..540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121544 508..540 +
1691679129.8605824-CDS-H-elongata_contig121544:507..5401691679129.8605824-CDS-H-elongata_contig121544:507..540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121544 508..540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121544.1652.1prot_H-elongata_contig121544.1652.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121544 75..540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121544.1652.1

>prot_H-elongata_contig121544.1652.1 ID=prot_H-elongata_contig121544.1652.1|Name=mRNA_H-elongata_contig121544.1652.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
MAVQGGHNSRPGPLLGNAQILVRLQFPLGFNFVRILFYHGSTWWTDRELP
AFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGL
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mRNA from alignment at H-elongata_contig121544:75..540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121544.1652.1 ID=mRNA_H-elongata_contig121544.1652.1|Name=mRNA_H-elongata_contig121544.1652.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=466bp|location=Sequence derived from alignment at H-elongata_contig121544:75..540+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGTGCAGGGCGGCCACAACTCCCGCCCAGGACCGCTCTTAGGGAA
TGCTCAAATTTTGGTTCGTCTTCAGTTTCCGCTCGGATTTAATTTCGTGC
GGATCCTGTTCTACCACGGTTCAACGTGGTGGACTGACCGAGAGCTCCCG
GCTTTTGAGCTTCTCGTTTCCGAGATGAAGACGGTGCTGGTGCTAGGGAC
GACCTTCAACGTCTACGCGCCGATGTTGATGGTGGTCCTGTGCTTGTTCA
CGTCCTGCAAGGTCTGGTGCTGAACGTGTAGCCAGAGTAGTCCAGCACGA
GAGATCCGGTTCTTGAATGCAAGCTGGTGCCTCTTGTTCCTTTCGAATGT
AACTATTGTTTTGTGTTGTTTCCAGAACGACGTTGAGATGACGATCTTCG
ATCACCACTAACCACTCACGAACCATCGAACAGGGATACGCGCGCGTCCT
GCGGTTGCTGGGACTG
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Coding sequence (CDS) from alignment at H-elongata_contig121544:75..540+

>mRNA_H-elongata_contig121544.1652.1 ID=mRNA_H-elongata_contig121544.1652.1|Name=mRNA_H-elongata_contig121544.1652.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig121544:75..540+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGTGCAGGGCGGCCACAACTCCCGCCCAGGACCGCTCTTAGGGAA
TGCTCAAATTTTGGTTCGTCTTCAGTTTCCGCTCGGATTTAATTTCGTGC
GGATCCTGTTCTACCACGGTTCAACGTGGTGGACTGACCGAGAGCTCCCG
GCTTTTGAGCTTCTCGTTTCCGAGATGAAGACGGTGCTGGTGCTAGGGAC
GACCTTCAACGTCTACGCGCCGATGTTGATGGTGGTCCTGTGCTTGTTCA
CGTCCTGCAAGATGGCTGTGCAGGGCGGCCACAACTCCCGCCCAGGACCG
CTCTTAGGGAATGCTCAAATTTTGGTTCGTCTTCAGTTTCCGCTCGGATT
TAATTTCGTGCGGATCCTGTTCTACCACGGTTCAACGTGGTGGACTGACC
GAGAGCTCCCGGCTTTTGAGCTTCTCGTTTCCGAGATGAAGACGGTGCTG
GTGCTAGGGACGACCTTCAACGTCTACGCGCCGATGTTGATGGTGGTCCT
GTGCTTGTTCACGTCCTGCAAGGGATACGCGCGCGTCCTGCGGTTGCTGG
GACTGGGATACGCGCGCGTCCTGCGGTTGCTGGGACTG
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