prot_H-elongata_contig121542.1651.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig121542.1651.1
Unique Nameprot_H-elongata_contig121542.1651.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length61
Homology
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BLAST of mRNA_H-elongata_contig121542.1651.1 vs. uniprot
Match: A0A6H5L7M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7M4_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 4.680e-21
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 0 
Query:    5 MSVLGMVAIGGVLGVGAVWAWGKIRGGARQPGVRYMATGVDNDIGTELGPFGREYA 60
            +SV+G+VA+GGV  VG +WAWGK + G RQPGVRYMATG+DN+IGTELGPFGR+YA
Sbjct:  360 LSVIGVVAVGGVXXVGGLWAWGKFQSGTRQPGVRYMATGLDNNIGTELGPFGRQYA 415
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BLAST of mRNA_H-elongata_contig121542.1651.1 vs. uniprot
Match: D8LR88_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR88_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.660e-17
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 0 
Query:    5 MSVLGMVAIGGVLGVGAVWAWGKIRGGARQPGVRYMATGVDNDIGTELGPFGREYA 60
            +SV+G+VA+G        WAWGK + G RQPGVRYMATG+DN+IGTELGPFGR+YA
Sbjct:  348 LSVMGVVAVGXXXXXXXXWAWGKFQSGTRQPGVRYMATGLDNNIGTELGPFGRQYA 403
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121542.1651.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7M4_9PHAE4.680e-2173.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LR88_ECTSI2.660e-1766.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..60
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availableTMHMMTMhelixcoord: 4..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121542contigH-elongata_contig121542:206..388 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121542.1651.1mRNA_H-elongata_contig121542.1651.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig121542 197..388 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig121542.1651.1 ID=prot_H-elongata_contig121542.1651.1|Name=mRNA_H-elongata_contig121542.1651.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MGLMMSVLGMVAIGGVLGVGAVWAWGKIRGGARQPGVRYMATGVDNDIGT
ELGPFGREYA*
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