mRNA_H-elongata_contig9029.16513.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9029.16513.1
Unique NamemRNA_H-elongata_contig9029.16513.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig9029.16513.1 vs. uniprot
Match: A0A6H5JTJ2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTJ2_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 9.430e-22
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 FPIVPRPQQMM-MQYPYGKYVGETIPDAGLMCDIPHGKGRFFYKDGAVYDGEWNRGNWEGKAVRTWP 198
            FP    P +++ MQYPYG Y+G+ IPDA L  DIPHG+G FFY DGAVY+G+W  GNWEG+AVRTWP
Sbjct:  138 FPTFMMPLRVVTMQYPYGMYMGQAIPDARLGSDIPHGRGSFFYNDGAVYEGDWKHGNWEGQAVRTWP 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9029.16513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JTJ2_9PHAE9.430e-2264.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9029contigH-elongata_contig9029:195..4475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue2e-26
Seed eggNOG ortholog2880.D7G935
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size465
Cds size438
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931303.079242-CDS-H-elongata_contig9029:194..2491622931303.079242-CDS-H-elongata_contig9029:194..249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9029 195..249 -
1691679780.8134227-CDS-H-elongata_contig9029:194..2491691679780.8134227-CDS-H-elongata_contig9029:194..249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9029 195..249 -
1622931303.0929093-CDS-H-elongata_contig9029:949..10381622931303.0929093-CDS-H-elongata_contig9029:949..1038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9029 950..1038 -
1691679780.8250384-CDS-H-elongata_contig9029:949..10381691679780.8250384-CDS-H-elongata_contig9029:949..1038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9029 950..1038 -
1622931303.1043737-CDS-H-elongata_contig9029:2064..21361622931303.1043737-CDS-H-elongata_contig9029:2064..2136Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9029 2065..2136 -
1691679780.8345628-CDS-H-elongata_contig9029:2064..21361691679780.8345628-CDS-H-elongata_contig9029:2064..2136Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9029 2065..2136 -
1622931303.1158626-CDS-H-elongata_contig9029:3339..34081622931303.1158626-CDS-H-elongata_contig9029:3339..3408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9029 3340..3408 -
1691679780.844636-CDS-H-elongata_contig9029:3339..34081691679780.844636-CDS-H-elongata_contig9029:3339..3408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9029 3340..3408 -
1622931303.12798-CDS-H-elongata_contig9029:3731..38001622931303.12798-CDS-H-elongata_contig9029:3731..3800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9029 3732..3800 -
1691679780.8543885-CDS-H-elongata_contig9029:3731..38001691679780.8543885-CDS-H-elongata_contig9029:3731..3800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9029 3732..3800 -
1622931303.1442528-CDS-H-elongata_contig9029:4364..44481622931303.1442528-CDS-H-elongata_contig9029:4364..4448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9029 4365..4448 -
1691679780.8634064-CDS-H-elongata_contig9029:4364..44481691679780.8634064-CDS-H-elongata_contig9029:4364..4448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9029 4365..4448 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931303.1608016-UTR-H-elongata_contig9029:4448..44751622931303.1608016-UTR-H-elongata_contig9029:4448..4475Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9029 4449..4475 -
1691679780.8723013-UTR-H-elongata_contig9029:4448..44751691679780.8723013-UTR-H-elongata_contig9029:4448..4475Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9029 4449..4475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9029.16513.1prot_H-elongata_contig9029.16513.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9029 195..4448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9029.16513.1

>prot_H-elongata_contig9029.16513.1 ID=prot_H-elongata_contig9029.16513.1|Name=mRNA_H-elongata_contig9029.16513.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MMMQYPYGKYVGETIPDAGLMCDIPHGKGRFFYKDGAVYDGEWNRGNWEG
KAVRTWPHGAMYDGEFKNSLQHGKGTLSLPNGGGGYSGEWEDGVQHGKGV
LTTTDGKICEGSFVRGNPHGKARTYYTFPNGMVYDGDFENGLPHGK
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mRNA from alignment at H-elongata_contig9029:195..4475-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9029.16513.1 ID=mRNA_H-elongata_contig9029.16513.1|Name=mRNA_H-elongata_contig9029.16513.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4281bp|location=Sequence derived from alignment at H-elongata_contig9029:195..4475- (Himanthalia elongata Himel1 dioecious)
TTTCCTATTGTCCCCCGACCCCAACAGATGATGATGCAGTACCCCTACGG
CAAGTACGTCGGGGAAACGATCCCCGACGCCGGCCTCATGTGCGATATTC
CACACGGTAAGGTGAGTATCCCTTCAGAACGCTACAAGGGAAATTCGTTT
TTCCTGTTCAGCTGACCACAAGCAGAAGGAAACCAAATCCGGTTGATTCT
TCTGCTAAATGTGAGACCAACAACAACATCTCATCACCCATATATCCGTT
ACTCACCCATATATCCGTTTTTTTTCGTGGACATCAAGTAAGTTGCGCGT
AACCATGCATGTGCATTGTCTGTCCGCTGCTGCATGGTGCATGGTGCAGA
GCATAATAACAGGAGGTACGCCGTCCTCCCACCGCAGGCAGTTCTGGTCG
TAATGATTGTCGTAATGCTTCGTACTACCACGCGCATTGAGTAATGTCTT
GTCTCTTTTGCTGCAACGAAATCATCAGTACAATACAATACACATCTATC
AAGAAGTTCCTGGACTACATCTAATATTGTTGGGAACACAAAAAGTTATC
GATCACCCCTCACTCCTCCTCCCTCCCTTGCTGGCCGTTTTGCAAACTCT
AACTTTATATGTAATACGTATAGATGTATCCGCCGTCCCGTGTTTGTTTC
TTATCGATCTTTGCGGCTGCTGCAGGGTCGTTTTTTCTACAAGGACGGCG
CTGTGTACGATGGAGAGTGGAACCGCGGAAACTGGGAGGGTAAGGTAGGG
GGCAGGTACGGTTCAGTACATTTGTTTTTAACGTGCAGTAAGTCGCGTCA
GGTGAGTACGACGAACGAAGACGAGAAGCGAGGCGTGATCTAAAACCCTC
GTCCTCGAGCAAAAGCAATCGATGCTCAAGAGAAGCTTCTCACTTTTTCT
CTTTTTAATTTAGCAGCTTAGATTCCAAGTGGTGATGTCGCGGTCGTCAA
CCGTGCACTGCGGATAAAAAAGACAGCATGATACAGTTTACACGAGAGTC
GTGAGTATCCACCCCCTGAAGTCGCGCTCGAGTGCTAGACTTGCCAACGC
CCCGTTGCCCCTGGCAGGCTGTGAGAACTTGGCCGCATGGAGCGATGTAC
GACGGAGAGTTCAAGAACAGTCTGCAGCACGGAAAGGTAAAGAGCTACGC
GGTGCAGCTACTGGTGGTGATATGCATTTGCAGACAATGGTCGTCTCTGT
GTGTACTGTAAATATATCGTGGGTGTTGCCCACAAGCACAGGTATACACT
AGAGTGGAGTTGAAGCCCTCGGTGTGCCTTGGAATGAAGAGATATAGACG
ATATTTTTATTACTGGCTAACTCCCAGGTCAGGTTTGCTTCACGGAGATA
AATATGAGAAGGGAACAAGGGTGCGAGCCCGTTCAGCAAAGTTCGCAAAA
ACAGTGTAGAGCGAATTCGCGAAGGTACGAATTTGCAGGAGCTTACGCGC
CTCATCGCGTCGAATAACTTTCCTATAATAAGAATCTACGGTACTAATAC
CACAGCACTATTTTCTGACAGTCCCTCCATGTCCTGCCATAAAGCGTTGA
CTAGAAAGAAAAGGCACACAGCGTGTCCATTTCTTAACAATGTCTAGAAC
CTTCTGGAACCTTTTACATGACACCGTATACAATGTCTTACTCAGGGCGT
GAACTCTGCTCTAGGAGTACAGTCAATATCACATTTTGATCGATACACAC
TGTATAGTCTATGTTGGTGACAGAGAACACAGAAGAGATAGAAATTGGTT
GCTGCCAACATGGACACATATATATATCCCTGAAAGCTACTGCTAGGCGT
TCTGGTGTCCCCTGTCCATGTCCCTGTCCCTGTCCCCCTCCCAATAAAAA
TAATAATACATATATATATATCTCACAGCTACCCCCCCCACACAAAAGTA
GAAGGCAAACTAGCTGCTCTCAGACTGTGGTACAAAGTGTTGCAAAGAAA
GGAGTAGAGAAAGGGAGCCAGGGCCGGCGTTTAACCCAAAGGTCGCGCCA
GAGTAAGCTTGATCCATAGAAGAAGCCCCCAGTGGCGCGCTGTTTCAGCT
TGCTGGCTACGCCAGGGTTCCTGCGCTTGCTCGACCACCTTTTTGCCAGC
AGGAGCGTGTTTGAAGGCATCGCTTGCTTTTGTCCAGCAGGAGAGGGTAG
GGGAAGGGACCGACTGGCTTACACGGCTAATTTTGCGGTGTTTCTCGACG
AGACGCGTGTATCTCACCACAACGGAGTGTGCACGATCACTCCCTTGAAT
TTGGTGGTTTCTTGTAAGAAGACTTTGTCCCAAGCAGAAGCACGATTTCT
GACGTTCTACCCGTCGCCCTCGTTTGCATGTCATGCCAGGGCACACTTTC
GCTCCCGAACGGTGGCGGCGGCTACTCGGGAGAGTGGGAGGATGGCGTCC
AACATGGGAAGGTCAGCAAATATTCTCTCTCCACCCGTAGACGGGAAAAT
TCGGCGGGGAAATATGAGGCAATGTCCCCTCATCCCTTCGTCTCGCCCTA
CAGATCCCGTTAACCGTTTGGGTCAATGCAGAGCCGACGAACTGTTTTTT
GCCACCGGAACATACAACAGTAACCGATAAATAGCTGTTATGTTTATTGC
TTGGAAGCGTTTTGCTCCTTGCGATCCCAGCTATTATTGTGTATCCACAC
TCTTCCACGCCTCCTGAGGCGAAAGTAAATTATATCGTTAGGGCTGGCGA
AGTGAATCCTATACTACGTTCATATATATATCATTTACTTTTTTGCAGCT
GTTATGTTTGAAATTTGACCACATGGAAAACCTCTCAAGCCTCCTCAGGG
ATGGAAGTCAAATGCCTCCATGTTTTTTCGTGAACTACGCGGGACATTGT
AGTTAGTGTAAGCGCGCGGCTACCCTACTTGAATATAGAAAAATCAATCA
CGGTATATTATAATGTGCTTCAAGGGCCTGTGCTCTTGAAAAAGGGGAAG
GATGGTGGTGGTGGGTATATATGCCGCCTAGGTTGCGTACTAGTGCCCCG
TGTTTTTTATAGATATTTAAGGCGGCATCAATCCCGATATTATACCCCCC
AGCGTAGGGCTATGCCTGATGCTGTGTAGACCAAAACGACAGAATACTAA
CGCCAAGGGAGTTCAATTTTATTGAAGCTCGACTGGTTGCTCCTCCTTCC
ACTCTCCGGTGAACGTCACGCAATGCAACGAACATACTCGTATCACGCGA
ATCCATCGTCCTGTCTGACAAGACATCGTAGCAGTGTAATATCTTGCGTT
TTCAAAATATACGCTGCTTTTTCGATACTGGGTACGATTGGAAAACATCC
CAGTTGTTCGAATTTTGAGATTTCCGCGAAGATATGGTGAAAGGTTTTGA
TCCAGAAAACGTGCACAAGAGGAAATATACGTATTGAGATCTTCCTCGAC
ATCAAACCCATCCCAGACCCCTGTTGCGCTCTTGCAGGGCGTGCTGACCA
CTACGGACGGAAAAATCTGTGAAGGAAGCTTCGTTCGTGGCAACCCTCAT
GGGAAGGCACGTACTTATTATACCTTGTTGTACATTTTACATTTTACCGC
GGTGTACCTTTTATACTGGAATATAATTTACCCCGTAAATTTCACCTTGA
AATACATTTTGCCATGATGTGTACATTATACGTTAAATCTTGCCGTAGAT
GTATAAGCTTTACTGTGCTAATAGCGTCTATGTAAAAGGGGTTTGGCGTC
CTCTGCCGATCCTTTCTGGCCAACAGTGAAAAATAAGAGATAATTCAGGG
TGCCGTTTTTTGAAAGGCCTACACGAGCTCGTTTCAGTATAGTTTAGCTT
TATCGCCGGACTGATGTCGTTCTAGTTGTCGAGAAATGTTTGGAGTGGAG
AGGGAAAACTGCACTGCCTCCCGGACTAGTATTGTTTACTAAGTTGAGCA
TAATATTTTTTCACCTAGGGTCGGACGTGATCGCTCGCTCCGGACAACAG
TCTCCGTGCCCCACGGGGGGAGCGGGGGCGCGCGTTCCCCACGCTGATTA
CGCTGCCCTGATTAAATGCAATTTTGCGCGTGCGCACGCGCGTTGCTGTA
ATGTTTATGTCGAGAGCGCGGATATCAGAGTCGCGGAGTCTTCGTGTTAT
CGTGGGGACACCGCCTAGTGATTCATCACACCCTCTCTCATTCTGTGTGT
GTTGACCCTCCTTCTCCTTTTTGATGGCCCTTTATGGCGATGATTCTTCC
TTTTTCGGCCAGTGTGTCTTGAAAAGTCCCAATGGAATGGTGTACGATGG
AGACTTCGAGAACGGTCTGCCCCATGGCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig9029:195..4475-

>mRNA_H-elongata_contig9029.16513.1 ID=mRNA_H-elongata_contig9029.16513.1|Name=mRNA_H-elongata_contig9029.16513.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig9029:195..4475- (Himanthalia elongata Himel1 dioecious)
ATGATGATGCAGTACCCCTACGGCAAGTACGTCGGGGAAACGATCCCCGA
CGCCGGCCTCATGTGCGATATTCCACACGGTAAGATGATGATGCAGTACC
CCTACGGCAAGTACGTCGGGGAAACGATCCCCGACGCCGGCCTCATGTGC
GATATTCCACACGGTAAGGGTCGTTTTTTCTACAAGGACGGCGCTGTGTA
CGATGGAGAGTGGAACCGCGGAAACTGGGAGGGTAAGGGTCGTTTTTTCT
ACAAGGACGGCGCTGTGTACGATGGAGAGTGGAACCGCGGAAACTGGGAG
GGTAAGGCTGTGAGAACTTGGCCGCATGGAGCGATGTACGACGGAGAGTT
CAAGAACAGTCTGCAGCACGGAAAGGCTGTGAGAACTTGGCCGCATGGAG
CGATGTACGACGGAGAGTTCAAGAACAGTCTGCAGCACGGAAAGGGCACA
CTTTCGCTCCCGAACGGTGGCGGCGGCTACTCGGGAGAGTGGGAGGATGG
CGTCCAACATGGGAAGGGCACACTTTCGCTCCCGAACGGTGGCGGCGGCT
ACTCGGGAGAGTGGGAGGATGGCGTCCAACATGGGAAGGGCGTGCTGACC
ACTACGGACGGAAAAATCTGTGAAGGAAGCTTCGTTCGTGGCAACCCTCA
TGGGAAGGCACGTACTTATTATACCTTGGCGTGCTGACCACTACGGACGG
AAAAATCTGTGAAGGAAGCTTCGTTCGTGGCAACCCTCATGGGAAGGCAC
GTACTTATTATACCTTTCCCAATGGAATGGTGTACGATGGAGACTTCGAG
AACGGTCTGCCCCATGGCAAGTCCCAATGGAATGGTGTACGATGGAGACT
TCGAGAACGGTCTGCCCCATGGCAAG
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