mRNA_H-elongata_contig121542.1651.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121542.1651.1
Unique NamemRNA_H-elongata_contig121542.1651.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig121542.1651.1 vs. uniprot
Match: A0A6H5L7M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7M4_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.060e-22
Identity = 44/63 (69.84%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 GGIMGLMMSVLGMVAIGGVLGVGAVWAWGKIRGGARQPGVRYMATGVDNDIGTELGPFGREYA 189
            GG++ L +SV+G+VA+GGV  VG +WAWGK + G RQPGVRYMATG+DN+IGTELGPFGR+YA
Sbjct:  353 GGMISLGLSVIGVVAVGGVXXVGGLWAWGKFQSGTRQPGVRYMATGLDNNIGTELGPFGRQYA 415
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BLAST of mRNA_H-elongata_contig121542.1651.1 vs. uniprot
Match: D8LR88_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR88_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.210e-18
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 GGIMGLMMSVLGMVAIGGVLGVGAVWAWGKIRGGARQPGVRYMATGVDNDIGTELGPFGREYA 189
            GG++ L +SV+G+VA+G        WAWGK + G RQPGVRYMATG+DN+IGTELGPFGR+YA
Sbjct:  341 GGMISLGLSVMGVVAVGXXXXXXXXWAWGKFQSGTRQPGVRYMATGLDNNIGTELGPFGRQYA 403
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121542.1651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7M4_9PHAE2.060e-2269.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LR88_ECTSI1.210e-1863.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121542contigH-elongata_contig121542:197..388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_003470.1
Exons1
Model size192
Cds size183
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929715.5435321-UTR-H-elongata_contig121542:196..2051622929715.5435321-UTR-H-elongata_contig121542:196..205Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121542 197..205 +
1691679129.8311284-UTR-H-elongata_contig121542:196..2051691679129.8311284-UTR-H-elongata_contig121542:196..205Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121542 197..205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929715.5656557-CDS-H-elongata_contig121542:205..3881622929715.5656557-CDS-H-elongata_contig121542:205..388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121542 206..388 +
1691679129.8404605-CDS-H-elongata_contig121542:205..3881691679129.8404605-CDS-H-elongata_contig121542:205..388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121542 206..388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121542.1651.1prot_H-elongata_contig121542.1651.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121542 206..388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121542.1651.1

>prot_H-elongata_contig121542.1651.1 ID=prot_H-elongata_contig121542.1651.1|Name=mRNA_H-elongata_contig121542.1651.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MGLMMSVLGMVAIGGVLGVGAVWAWGKIRGGARQPGVRYMATGVDNDIGT
ELGPFGREYA*
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mRNA from alignment at H-elongata_contig121542:197..388+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121542.1651.1 ID=mRNA_H-elongata_contig121542.1651.1|Name=mRNA_H-elongata_contig121542.1651.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig121542:197..388+ (Himanthalia elongata Himel1 dioecious)
GGGGGCATTATGGGCCTCATGATGTCGGTCCTAGGAATGGTTGCTATTGG
AGGCGTTCTTGGTGTGGGGGCAGTTTGGGCCTGGGGGAAGATCCGCGGCG
GCGCGCGCCAGCCGGGGGTGCGGTACATGGCCACAGGCGTGGACAACGAC
ATCGGAACCGAGCTTGGCCCCTTCGGGCGCGAATACGCCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig121542:197..388+

>mRNA_H-elongata_contig121542.1651.1 ID=mRNA_H-elongata_contig121542.1651.1|Name=mRNA_H-elongata_contig121542.1651.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig121542:197..388+ (Himanthalia elongata Himel1 dioecious)
ATGGGCCTCATGATGTCGGTCCTAGGAATGGTTGCTATTGGAGGCGTTCT
TGGTGTGGGGGCAGTTTGGGCCTGGGGGAAGATCCGCGGCGGCGCGCGCC
AGCCGGGGGTGCGGTACATGGCCACAGGCGTGGACAACGACATCGGAACC
GAGCTTGGCCCCTTCGGGCGCGAATACGCCTAAATGGGCCTCATGATGTC
GGTCCTAGGAATGGTTGCTATTGGAGGCGTTCTTGGTGTGGGGGCAGTTT
GGGCCTGGGGGAAGATCCGCGGCGGCGCGCGCCAGCCGGGGGTGCGGTAC
ATGGCCACAGGCGTGGACAACGACATCGGAACCGAGCTTGGCCCCTTCGG
GCGCGAATACGCCTAA
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