mRNA_H-elongata_contig90228.16510.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig90228.16510.1
Unique NamemRNA_H-elongata_contig90228.16510.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig90228.16510.1 vs. uniprot
Match: D7FHR8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHR8_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 4.260e-12
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 VIWSYQPDPISTAAFFAMAALGAVSLLVAVFLGIAALSALGIYGFAKMAESAQLEAQR 174
            VIWSYQPDP+ST AF AMAALGAVS+L    LG+AA+   G+Y  AK+AE+AQ+EA R
Sbjct:  220 VIWSYQPDPLSTLAFAAMAALGAVSMLATWLLGLAAVGVTGVYTVAKLAETAQIEAAR 277
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig90228.16510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHR8_ECTSI4.260e-1265.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig90228contigH-elongata_contig90228:1322..2301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue5.8e-10
Seed eggNOG ortholog2880.D7FHR8
EggNOG OGs28IGU@1,2QQTP@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons2
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931302.7450187-CDS-H-elongata_contig90228:1321..15041622931302.7450187-CDS-H-elongata_contig90228:1321..1504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90228 1322..1504 -
1691679780.647003-CDS-H-elongata_contig90228:1321..15041691679780.647003-CDS-H-elongata_contig90228:1321..1504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90228 1322..1504 -
1622931302.761208-CDS-H-elongata_contig90228:2142..23011622931302.761208-CDS-H-elongata_contig90228:2142..2301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90228 2143..2301 -
1691679780.671456-CDS-H-elongata_contig90228:2142..23011691679780.671456-CDS-H-elongata_contig90228:2142..2301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90228 2143..2301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig90228.16510.1prot_H-elongata_contig90228.16510.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig90228 1322..2301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig90228.16510.1

>prot_H-elongata_contig90228.16510.1 ID=prot_H-elongata_contig90228.16510.1|Name=mRNA_H-elongata_contig90228.16510.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
VIWSYQPDPISTAAFFAMAALGAVSLLVAVFLGIAALSALGIYGFAKMAE
SAQLEAQRIADGDGYYMHQQQQQQQQQQQGRSSQNYQQQRQQQPRHGPPK
SSQTHTPNWDHID*
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mRNA from alignment at H-elongata_contig90228:1322..2301-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig90228.16510.1 ID=mRNA_H-elongata_contig90228.16510.1|Name=mRNA_H-elongata_contig90228.16510.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=980bp|location=Sequence derived from alignment at H-elongata_contig90228:1322..2301- (Himanthalia elongata Himel1 dioecious)
GTGATCTGGTCTTACCAACCAGACCCGATCTCAACGGCAGCATTCTTCGC
GATGGCTGCCCTCGGCGCCGTATCATTGCTGGTTGCAGTGTTCCTGGGCA
TCGCCGCCTTGAGCGCCTTGGGAATCTACGGCTTCGCAAAAATGGCCGAG
AGCGCACAGGTACTGTTAAAGGCTGACATCATATTCTAAACTAGATACAA
AACACACACACACACACATATATATAATCATACAGGTAATTAGTATGTAT
AATTAGTATAGTATAGGATTAATAAGTGTGAACCGGCAGGCGGGATAATG
GATGATGATTGATTATTGATGTGCAGTGTTGCCGTTGGTAGGAGTGGTCA
CATCCTAGCCCTTTGAATGGTGCACCCCTTCCACAGAGAGGCGGGAACAA
AAGAAAGAGGTAGACGCGGATATGTGTATACTTCCGTATAGAGAGAGAGA
GAGAGAGCCTAAAGAAAGAGCGATATGCGTTTACGGTTTTCAGTTGTGGT
ATAACAGACGTGGTAAATGTAAATATTGAGGAGATCTTGTTTTATTAGTA
TAAAGAACGAGCGATCGGGAGGAAGGGAGGGAGGAAAGGGAGCCTCTTCC
GTGATCGCGATCGGCGTGCAAAACAGGCGAAAAAAACGCCTCCTCGTGAA
ATTGGCATCTCTGTTATCGTCGCATTCCCTATTCCTATTTTAATGAATGA
ATGAATGCATGCCGAGCACAACATATATAGAGAAGGAAGTACGTTTGCGA
TGTGCACTGAAATCTAGCGCTTTTGGCGTCGTTTCCGATATATACAGCTC
GAGGCTCAACGAATAGCTGACGGTGACGGATACTATATGCACCAGCAGCA
ACAACAACAGCAGCAGCAGCAGCAAGGGCGGTCTAGTCAAAACTATCAGC
AACAGCGGCAGCAGCAACCTCGACACGGCCCACCGAAGTCATCTCAGACA
CACACCCCGAACTGGGATCACATCGATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig90228:1322..2301-

>mRNA_H-elongata_contig90228.16510.1 ID=mRNA_H-elongata_contig90228.16510.1|Name=mRNA_H-elongata_contig90228.16510.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig90228:1322..2301- (Himanthalia elongata Himel1 dioecious)
GTGATCTGGTCTTACCAACCAGACCCGATCTCAACGGCAGCATTCTTCGC
GATGGCTGCCCTCGGCGCCGTATCATTGCTGGTTGCAGTGTTCCTGGGCA
TCGCCGCCTTGAGCGCCTTGGGAATCTACGGCTTCGCAAAAATGGCCGAG
AGCGCACAGGTGATCTGGTCTTACCAACCAGACCCGATCTCAACGGCAGC
ATTCTTCGCGATGGCTGCCCTCGGCGCCGTATCATTGCTGGTTGCAGTGT
TCCTGGGCATCGCCGCCTTGAGCGCCTTGGGAATCTACGGCTTCGCAAAA
ATGGCCGAGAGCGCACAGCTCGAGGCTCAACGAATAGCTGACGGTGACGG
ATACTATATGCACCAGCAGCAACAACAACAGCAGCAGCAGCAGCAAGGGC
GGTCTAGTCAAAACTATCAGCAACAGCGGCAGCAGCAACCTCGACACGGC
CCACCGAAGTCATCTCAGACACACACCCCGAACTGGGATCACATCGATTG
ACTCGAGGCTCAACGAATAGCTGACGGTGACGGATACTATATGCACCAGC
AGCAACAACAACAGCAGCAGCAGCAGCAAGGGCGGTCTAGTCAAAACTAT
CAGCAACAGCGGCAGCAGCAACCTCGACACGGCCCACCGAAGTCATCTCA
GACACACACCCCGAACTGGGATCACATCGATTGA
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