prot_H-elongata_contig90228.16510.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig90228.16510.1
Unique Nameprot_H-elongata_contig90228.16510.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length114
Homology
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BLAST of mRNA_H-elongata_contig90228.16510.1 vs. uniprot
Match: D7FHR8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHR8_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 4.260e-12
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 0 
Query:    1 VIWSYQPDPISTAAFFAMAALGAVSLLVAVFLGIAALSALGIYGFAKMAESAQLEAQR 58
            VIWSYQPDP+ST AF AMAALGAVS+L    LG+AA+   G+Y  AK+AE+AQ+EA R
Sbjct:  220 VIWSYQPDPLSTLAFAAMAALGAVSMLATWLLGLAAVGVTGVYTVAKLAETAQIEAAR 277
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig90228.16510.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHR8_ECTSI4.260e-1265.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..12
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 47..113
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 13..46
NoneNo IPR availableTMHMMTMhelixcoord: 15..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig90228contigH-elongata_contig90228:1322..2301 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig90228.16510.1mRNA_H-elongata_contig90228.16510.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig90228 1322..2301 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig90228.16510.1 ID=prot_H-elongata_contig90228.16510.1|Name=mRNA_H-elongata_contig90228.16510.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
VIWSYQPDPISTAAFFAMAALGAVSLLVAVFLGIAALSALGIYGFAKMAE
SAQLEAQRIADGDGYYMHQQQQQQQQQQQGRSSQNYQQQRQQQPRHGPPK
SSQTHTPNWDHID*
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