mRNA_H-elongata_contig9016.16502.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9016.16502.1
Unique NamemRNA_H-elongata_contig9016.16502.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig9016.16502.1 vs. uniprot
Match: D7G1M4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M4_ECTSI)

HSP 1 Score: 417 bits (1071), Expect = 3.490e-134
Identity = 199/266 (74.81%), Postives = 226/266 (84.96%), Query Frame = 1
Query:    1 TYPSIRGRTLFRPKDRLALTKSIMSGFFDMGVLQARGVVDAVCALHDANRGEPLTTEVLHKRWTLGLCHESKDCIGAPMVGMQQMMDDSYPAPWYLQLFCQPLDDVRAYFGEKLAFYFAWLGFYGWALVIPAFYGIAVEIYLLYAGITFVEEGWDYAQVSMTVGVVLWGTIYQELWAREQKLVAVKWGTSGFEEVEKDRPQFEGDKDSPDGGRRRSPVTNTFETHFPDYKRKIRQALGLVVVMLFVVALLALVWMVEWLEHYLEDD 798
            TYPSIRGRT+FR KDRLALTK I+  FFDMGVLQARG+VDAVCALHDANRGE +T EVL KRWTLG   E  D IGAPM+ MQ MMD    APW+LQLFCQPLDD+R YFGEK+AFYFAWLGFY WAL++PA YG+ +EIY+L  GITF E GW ++QVSM VG+VLW  IYQELW RE+K++AVKWGTSGFEE+EKDRP FEGDKDSP GGRRRSPVTNTF+T++P++KRKIRQ LGLVVV+LFV  LL LV +VEWLEHYLE D
Sbjct:  363 TYPSIRGRTIFRAKDRLALTKGIIDSFFDMGVLQARGIVDAVCALHDANRGEVITKEVLQKRWTLGFWRERSDRIGAPMLSMQ-MMDHGNSAPWFLQLFCQPLDDIRGYFGEKMAFYFAWLGFYAWALIVPALYGVGIEIYILVKGITFEESGWTFSQVSMAVGIVLWSVIYQELWDREEKVIAVKWGTSGFEEIEKDRPNFEGDKDSPGGGRRRSPVTNTFQTYYPEHKRKIRQVLGLVVVLLFVAGLLLLVGLVEWLEHYLETD 627          
BLAST of mRNA_H-elongata_contig9016.16502.1 vs. uniprot
Match: A0A835YL56_9STRA (Calcium-activated chloride channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL56_9STRA)

HSP 1 Score: 312 bits (800), Expect = 6.820e-94
Identity = 169/288 (58.68%), Postives = 199/288 (69.10%), Query Frame = 1
Query:    1 TYPSIRGRTLFRPKDRLALTKSIMSGFFDMGVLQARGVVDAVCALHDANRGEPLTTEVLHKRWTLGLCHESKDCIGAPMVGMQQMMDDSYPAPWYLQLFCQPLDDVRAYFGEKLAFYFAWLGFYGWALVIPAFYGIAVEIYLLYAGITFVEEGWDYAQVSMTVGVVLWGTIYQELWAREQKLVAVKWGTSGFEEVEKDRPQFEGD-----------------KDSPDGGRRRSPVTNTFETHFPDYKRKIRQALGLVV------VMLFVVALLALVWMVEWLEHYLED 795
            TYPSIRGRTLFR KDRLALTKSI+  +FDMGVL A+ V+D++ ALHDANRG+ +TTEVL KRW L   HE  D IGAPMV M  M D+     WY++ F QPLDDVR YFGEKLA YFAWLGFYGW+L  PA   +A EIY+   GI+F  E  D  Q+ +   +V+WG +YQE W RE+K VAVKWGT GFEE EKDRPQFEGD                 + +P G RRRS VTNT+ET+FP+ KR+ RQALGL V      V+ F+  LLALV   EWLEHYL+D
Sbjct: 1108 TYPSIRGRTLFRAKDRLALTKSIIDAYFDMGVLAAKDVIDSMTALHDANRGDRITTEVLQKRWVLWW-HEDPDRIGAPMVTMDAM-DEGQRVSWYMRPFSQPLDDVRCYFGEKLAMYFAWLGFYGWSLAFPAILCMAAEIYMWSHGISFGSE-LDPVQIGVAAMIVVWGAVYQEFWEREEKAVAVKWGTRGFEESEKDRPQFEGDSIALKXXXXXXXXXXXXRSAPGGERRRSAVTNTYETYFPEGKRRTRQALGLAVALGLAVVVFFIACLLALVQFTEWLEHYLQD 1392          
BLAST of mRNA_H-elongata_contig9016.16502.1 vs. uniprot
Match: A0A8J2S5F9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S5F9_9STRA)

HSP 1 Score: 203 bits (517), Expect = 5.570e-56
Identity = 118/261 (45.21%), Postives = 156/261 (59.77%), Query Frame = 1
Query:    4 YPSIRGRTLFRPKDRLALTKSIMSGFFDMGVLQARGVVDAVCALHDANRGEPLTTEVLHKRWTLGLCHESKDCIGAPMVGMQQMMDDSYPAPWYLQLFCQPLDDVRAYFGEKLAFYFAWLGFYGWALVIPAFYGIAVEIYLLYAGITFVEEGWDYAQVSMTVGVVLWGTIYQELWAREQKLVAVKWGTSGFEEVEKDRPQFEGDKDSPDGGRRRSPVTNTFETHFPDYKRKIRQALGLVVVMLFVVALLALVWMVEWLEHY 786
            YPS+RGRTLF PKDRL LTK I+   FD  VL+ RG+V+   ALHDAN GE  TT+ L KRW      E+    GAP++    M+      P Y++ + QPL +VRAYFGEK+A YFAWL FYG+ L+ PA +  AV  Y     +   EEG    Q  +   +V W   Y+E W  E +  AV+WGT  FE  E DRPQFEGD   P   RR SP+TN  ET++P+ KR   + + L  V L + AL+ L+ ++ WL+++
Sbjct:  280 YPSVRGRTLFLPKDRLYLTKRIVDEVFDFAVLKERGLVETFVALHDANHGEMPTTDWLQKRWVFFWRAEATRA-GAPLLSQTYMLKGR-SCPCYMRPWAQPLMEVRAYFGEKVALYFAWLAFYGYYLIYPALFCAAVYAYDSAKDVDDEEEGVHVEQFLVAGFLVAWSAYYKESWDIESQYCAVRWGTLRFEAEEADRPQFEGDPAEP---RRVSPITNQSETYYPESKRTRTRIVSLAFVTLSIAALVTLIAVIFWLQYF 535          
BLAST of mRNA_H-elongata_contig9016.16502.1 vs. uniprot
Match: A0A8J2SE39_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SE39_9STRA)

HSP 1 Score: 197 bits (501), Expect = 7.960e-54
Identity = 118/265 (44.53%), Postives = 153/265 (57.74%), Query Frame = 1
Query:    4 YPSIRGRTLFRPKDRLALTKSIMSGFFDMGVLQARGVVDAVCALHDANRGEPLTTEVLHKRWTLGLCHESKDCIGAPMVGMQQMMDDSYPAPWYLQLFCQPLDDVRAYFGEKLAFYFAWLGFYGWALVIPAFYGIAVEIYLLYAGITFVEEGW-DYAQVSMTVGVVLWGTIYQELWAREQKLVAVKWGTSGFEEVEKDRPQFEGDKDSPDGGRRRSPVTNTFETHFPDYKRKIRQALGLVVVMLFVVALLALVWMVEWLEHYLED 795
            YPS+RG+TLF PKDRL LT  IM   FD GVL    VV+   ALHDAN GE LT E     W L      +DC GAP V M Q+ D      ++ + + QPL ++RAYFGE++A YFAWLG+YG++L  P     A  IY    G +  +EGW    QVS+   +V W  +Y++ W  EQ+  A KWG   FEE E DRPQF GD D P   RR SP+TN  ET++P  KR   Q    ++V L  + +L +  ++  LE+ L D
Sbjct:  292 YPSVRGKTLFLPKDRLYLTSKIMDEHFDFGVLVEHKVVEQCLALHDANAGESLTLEWFSDHWVLFWRSGPRDC-GAPRVSMPQI-DKGEACQYWERPWAQPLMEIRAYFGEQVALYFAWLGYYGYSLTTPTIVLTAAGIYEFVTGQSADDEGWWKPVQVSLAFFLVAWSALYKDGWDVEQQWCATKWGMLDFEEEEADRPQFVGDADEP---RRLSPITNQNETYYPAEKRARTQFFNSIIVALLALLILVIFALIFELEYKLLD 551          
BLAST of mRNA_H-elongata_contig9016.16502.1 vs. uniprot
Match: A0A7S3NJZ7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJZ7_9STRA)

HSP 1 Score: 195 bits (496), Expect = 3.810e-53
Identity = 111/230 (48.26%), Postives = 143/230 (62.17%), Query Frame = 1
Query:    4 YPSIRGRTLFRPKDRLALTKSIMSGFFDMGVLQARGVVDAVCALHDANRGEPLTTEVLHKRWTLGLCHESKDCIGAPMVGMQQMMDDSYPAPWYLQLFCQPLDDVRAYFGEKLAFYFAWLGFYGWALVIPAFYGIAVEIYLLYAGITFVEEGWDYAQVSMTVGVVLWGTIYQELWAREQKLVAVKWGTSGFEEVEKDRPQFEGDKDSPDGGRRR-SPVTNTFETHFPDYK 690
            YPS+RG+TLF  KDRL LT+ I+   FD GVL+   +VD + ALHDAN GE  T +   KRW      E+ D +GAP V    ++      P YL+ F QPL ++R+YFGEK+AFYFAWLGFYG+ L+ PA  G+   +YLL++G +    G    Q+ M + +V+W   Y+E W  E +  A+KWGT  FEE E DRPQF GD   PDG  RR SPVTN  ET +P  K
Sbjct:  301 YPSVRGKTLFLSKDRLYLTRRIIDEVFDFGVLEENKLVDLITALHDANYGEMPTADWFLKRWVYFYQAEA-DRVGAPYVTHYAIIKHR-TCPRYLRPFAQPLMEIRSYFGEKIAFYFAWLGFYGYYLIYPALGGLICTLYLLFSGTSDEAIGIHPEQIIMALALVVWSAFYKESWDIESQYCALKWGTLNFEEQEVDRPQFHGD---PDGEPRRISPVTNQKETFYPPEK 525          
BLAST of mRNA_H-elongata_contig9016.16502.1 vs. uniprot
Match: A0A7S2BNC7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNC7_9STRA)

HSP 1 Score: 171 bits (433), Expect = 5.340e-48
Identity = 90/205 (43.90%), Postives = 123/205 (60.00%), Query Frame = 1
Query:    4 YPSIRGRTLFRPKDRLALTKSIMSGFFDMGVLQARGVVDAVCALHDANRGEPLTTEVLHKRWTLGLCHESKDCIGAPMVGMQQMMDDSYPAPWYLQLFCQPLDDVRAYFGEKLAFYFAWLGFYGWALVIPAFYGIAVEIYLLYAGITFVEE-GWDYAQVSMTVGVVLWGTIYQELWAREQKLVAVKWGTSGFEEVEKDRPQFEGD 615
            Y S+RG T+F PKDRL LT+ I+   FD  VLQ   V+D++  LHD+N GE LTT    K W      + +D IGAP +      + SY  PW +  + QPL ++R YFGE +A YFAWLGFYG+ L+IPA  G  +++   Y  IT  +  G  Y  V  ++ +V+W   Y   W  E+K+ A+ WGT+GFE+ E +RPQF GD
Sbjct:  120 YASVRGTTIFMPKDRLYLTRQILENIFDFAVLQRVEVIDSMFPLHDSNYGEALTTSSFLKTWIYPYMGD-RDKIGAPYLSHPANDNGSY-CPWPMLPWAQPLSEIREYFGESVAMYFAWLGFYGYYLLIPAIVGSGMQLLYYYGIITHYDSSGIKYYMVLFSIFMVVWANYYNMQWTTEEKICALAWGTNGFEDAEGNRPQFHGD 322          
BLAST of mRNA_H-elongata_contig9016.16502.1 vs. uniprot
Match: A0A7S2DV50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DV50_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.400e-44
Identity = 101/281 (35.94%), Postives = 154/281 (54.80%), Query Frame = 1
Query:    4 YPSIRGRTLFRPKDRLALTKSIMSGFFDMGVLQARGVVDAVCALHDANRGEPLTTEVLHKRWTLGLCHESKDCIGAPMVGMQQMMDDSYPAPWYLQLFCQPLDDVRAYFGEKLAFYFAWLGFYGWALVIPAFYGIAVEIYLLYAGITFVEEGWDYAQVSMTVG---VVLWGTIYQELWAREQKLVAVKWGTSGFEEVEKDRPQFEGDKDSP-------------DGGRRRSPVTNTFETHFPDYKRKIRQALGLVVVMLFVVALLALVWMVEWLEHYLEDD 798
            YPS+RG TLFR KDRL +T +I+S  FD  +L++ G++D++  LHD+N GE LTT   +K W        KD +G P V  +     S    W+   + QP  ++R YFGEKLA YF WLG+YG  L+ P+  GIA++IY +       +      +V M +    +VLW T + + W  E+K +AV WGT GFE+ E +RPQF+GD+                   RR S +T   ET++P  KR++++ +   V+    + ++  V +  ++E  L D+
Sbjct:  262 YPSVRGSTLFRSKDRLYITDTILSEHFDFPILKSSGIIDSIFPLHDSNFGEALTTLSFNKMWIFPW-RADKDKVGGPYVSHEATERKSTCPIWWYP-WAQPHMEIREYFGEKLALYFGWLGYYGVMLIYPSLVGIALQIYQIRYNDAATDPDGQNIKVYMVLYATFIVLWATAFTKGWGVEEKKIAVLWGTEGFEDNEGNRPQFQGDRAESFLLSCFFGCNTNIAEPRRLSAITLQMETYYPPEKREMKETINNTVIFFLCLLVVISVIINSYVESMLIDE 540          
BLAST of mRNA_H-elongata_contig9016.16502.1 vs. uniprot
Match: A0A7S3XKI6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKI6_HETAK)

HSP 1 Score: 151 bits (381), Expect = 5.800e-38
Identity = 80/175 (45.71%), Postives = 113/175 (64.57%), Query Frame = 1
Query:  271 PAPWYLQLFCQPLDDVRAYFGEKLAFYFAWLGFYGWALVIPAFYGIAVEIYLLYAGITFVEEGWDYAQVSMTVGVVLWGTIYQELWAREQKLVAVKWGTSGFEEVEKDRPQFEGDKDSPDGGRRRSPVTNTFETHFPDYKRKIRQALGLVVVMLFVVALLALVWMVEWLEHYLED 795
            P PWYL  F QPL D+R YFGE+LA +FAWLGFY + L++PA  G+A   Y + AG     EG +Y QV+    V+LW  +Y+  W +E  L+AV WGT GFEE E DRPQF G  + P   RRRS VTN  ET++P+ +R   Q   +++++  + A LA+++++ +LE+ LE 
Sbjct:    3 PTPWYLVPFAQPLHDIRDYFGERLALFFAWLGFYAYWLLVPAAAGLAYGAYAVAAGDPGESEGVNYYQVAFVTVVILWTVLYKTHWDQESALIAVAWGTHGFEEEEADRPQFRGWPEEP---RRRSEVTNRLETYYPEDQRARTQVGSVIMMLTMIAACLAVMFVLFYLEYELES 174          
BLAST of mRNA_H-elongata_contig9016.16502.1 vs. uniprot
Match: A0A7S3USK5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USK5_HETAK)

HSP 1 Score: 145 bits (366), Expect = 1.000e-37
Identity = 88/220 (40.00%), Postives = 129/220 (58.64%), Query Frame = 1
Query:  133 LHDANRGEPLTTEVLHKRWTLGLCHESKDCIGAPMVGMQQMMDDSYPAPWYLQLFCQPLDDVRAYFGEKLAFYFAWLGFYGWALVIPAFYGIAVEIYLLYAGITFVEEGWDYAQVSMTVGVVLWGTIYQELWAREQKLVAVKWGTSGFEEVEKDRPQFEGDKDSPDGGRRRSPVTNTFETHFPDYKRKIRQALGLVVVMLFVVALLALVWMVEWLEHYLE 792
            LHDA+RG+ +T E L K W       +K  +GAP+ G          A  + +L+CQPLDD+R+Y+GEKLA YFAWLG Y W L   A  G+AV+ YL + G    EEG+ Y   ++ V VVL  +     W  E++ +AVKWGT GFEE EKDRP F+ D++ P    R + +TN  E ++P+ KR++  A+  +++   V  ++ LV ++     Y+E
Sbjct:   20 LHDASRGDIVTRESLRKNWVTIYRAHAKG-VGAPL-GTDPEQQFGVNARPFTRLWCQPLDDIRSYYGEKLALYFAWLGAYCWFLRPWALLGLAVQAYLYFYGTGAAEEGFQYWTAAVCVLVVLQTSAMHVGWKAEEEALAVKWGTEGFEEQEKDRPAFKADENEPT---RINRITNEMELNYPEEKRQLHSAIHYLIIAGCVAGVVVLVHVLYATAGYME 234          
BLAST of mRNA_H-elongata_contig9016.16502.1 vs. uniprot
Match: A0A7S2RR19_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RR19_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.300e-29
Identity = 74/220 (33.64%), Postives = 111/220 (50.45%), Query Frame = 1
Query:  208 ESKDCIGAPMVGMQQMMDDSYPAPWYLQLFCQPLDDVRAYFGEKLAFYFAWLGFYGWALVIPAFYGIAVEIYLLYAGITFVEEGWDYAQVSMTVGVVLWGTIYQELWAREQKLVAVKWGTSGFEEVEKDRPQFEGDKDSPDGGRRR--------------------------SPVTNTFETHFPDYKRKIRQALGLVVVMLFVVALLALVWMVEWLEHYL 789
            E +  IGAP V       D   AP  L  FCQPLDD+R+YFGEK+AFY+AWLGF   +L+ P+  G+  + Y    G T+ + G D+ QV     V LW  +Y E+W  +Q L A KWGT   E+ E+ R +F     +  G  RR                          +PVTN  E  +P   R + + + +++V++ ++A   + W + +LE++L
Sbjct:    8 EERRKIGAPTVSSSYAKPDR-AAPLLLYWFCQPLDDIRSYFGEKVAFYYAWLGFLTMSLLWPSLVGLGCQAYYFVEGFTWCDSGIDWVQVGTAGFVALWCVVYSEMWKGQQALAATKWGTEDAEDKEEVRHEFTPVMGTARGSARRVWQGLYFELSKSLGARPGDFEEIYERNPVTNRNEPFYPSKLRAVWETMNMLIVLMCILASCGVTWALMYLEYFL 226          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9016.16502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1M4_ECTSI3.490e-13474.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YL56_9STRA6.820e-9458.68Calcium-activated chloride channel-domain-containi... [more]
A0A8J2S5F9_9STRA5.570e-5645.21Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2SE39_9STRA7.960e-5444.53Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3NJZ7_9STRA3.810e-5348.26Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2BNC7_9STRA5.340e-4843.90Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2DV50_9STRA1.400e-4435.94Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3XKI6_HETAK5.800e-3845.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3USK5_HETAK1.000e-3740.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2RR19_9STRA2.300e-2933.64Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9016contigH-elongata_contig9016:3..3237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score417.9
Seed ortholog evalue3.5e-114
Seed eggNOG ortholog2880.D7G1M4
KEGG koko:K19327,ko:K19480,ko:K19497,ko:K19501
KEGG TC1.A.17.1,1.A.17.1.2,1.A.17.1.21,1.A.17.1.3
KEGG Pathwayko04740,map04740
EggNOG free text desc.intracellular chloride channel activity
EggNOG OGsKOG2514@1,KOG2514@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnoctamin
Ec32 orthologEc-26_000980.2
Exons7
Model size798
Cds size798
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931301.6259925-CDS-H-elongata_contig9016:2..1041622931301.6259925-CDS-H-elongata_contig9016:2..104Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 3..104 -
1691679780.1688693-CDS-H-elongata_contig9016:2..1041691679780.1688693-CDS-H-elongata_contig9016:2..104Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 3..104 -
1622931301.6386874-CDS-H-elongata_contig9016:368..4681622931301.6386874-CDS-H-elongata_contig9016:368..468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 369..468 -
1691679780.1880236-CDS-H-elongata_contig9016:368..4681691679780.1880236-CDS-H-elongata_contig9016:368..468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 369..468 -
1622931301.6544108-CDS-H-elongata_contig9016:1240..13621622931301.6544108-CDS-H-elongata_contig9016:1240..1362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 1241..1362 -
1691679780.197061-CDS-H-elongata_contig9016:1240..13621691679780.197061-CDS-H-elongata_contig9016:1240..1362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 1241..1362 -
1622931301.6713135-CDS-H-elongata_contig9016:2109..22091622931301.6713135-CDS-H-elongata_contig9016:2109..2209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 2110..2209 -
1691679780.2068207-CDS-H-elongata_contig9016:2109..22091691679780.2068207-CDS-H-elongata_contig9016:2109..2209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 2110..2209 -
1622931301.685959-CDS-H-elongata_contig9016:2408..25331622931301.685959-CDS-H-elongata_contig9016:2408..2533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 2409..2533 -
1691679780.2179322-CDS-H-elongata_contig9016:2408..25331691679780.2179322-CDS-H-elongata_contig9016:2408..2533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 2409..2533 -
1622931301.7000408-CDS-H-elongata_contig9016:2818..28961622931301.7000408-CDS-H-elongata_contig9016:2818..2896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 2819..2896 -
1691679780.2260804-CDS-H-elongata_contig9016:2818..28961691679780.2260804-CDS-H-elongata_contig9016:2818..2896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 2819..2896 -
1622931301.7153728-CDS-H-elongata_contig9016:3066..32371622931301.7153728-CDS-H-elongata_contig9016:3066..3237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 3067..3237 -
1691679780.2367098-CDS-H-elongata_contig9016:3066..32371691679780.2367098-CDS-H-elongata_contig9016:3066..3237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9016 3067..3237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9016.16502.1prot_H-elongata_contig9016.16502.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9016 3..3237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9016.16502.1

>prot_H-elongata_contig9016.16502.1 ID=prot_H-elongata_contig9016.16502.1|Name=mRNA_H-elongata_contig9016.16502.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=266bp
TYPSIRGRTLFRPKDRLALTKSIMSGFFDMGVLQARGVVDAVCALHDANR
GEPLTTEVLHKRWTLGLCHESKDCIGAPMVGMQQMMDDSYPAPWYLQLFC
QPLDDVRAYFGEKLAFYFAWLGFYGWALVIPAFYGIAVEIYLLYAGITFV
EEGWDYAQVSMTVGVVLWGTIYQELWAREQKLVAVKWGTSGFEEVEKDRP
QFEGDKDSPDGGRRRSPVTNTFETHFPDYKRKIRQALGLVVVMLFVVALL
ALVWMVEWLEHYLEDD
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mRNA from alignment at H-elongata_contig9016:3..3237-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9016.16502.1 ID=mRNA_H-elongata_contig9016.16502.1|Name=mRNA_H-elongata_contig9016.16502.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3235bp|location=Sequence derived from alignment at H-elongata_contig9016:3..3237- (Himanthalia elongata Himel1 dioecious)
ACGTACCCAAGCATCCGCGGACGCACCCTGTTCCGCCCGAAGGACAGACT GGCTTTGACCAAGTCCATTATGTCCGGCTTCTTCGACATGGGCGTGCTTC AGGCGCGGGGGGTGGTCGACGCTGTGTGTGCCCTGCATGACGCCAACCGT GGAGAGCCCCTTACCACCGAGGTACTACATATTATTGTCATAACCATGGT GATGCATCACAACTTGATTCCGCTGGACGACGTTTTGTTCCGCTTTTCTC CGGGCGCATACAGTGACCAAGTAATTTATCTCTGAGGCGGTCCAAACAAA AAATACTCTTGTTTCTTGTCGGCCACTTCGCCGCGTCCCAGGTTCTACAC AAGCGGTGGACGCTAGGCCTCTGTCACGAGAGCAAAGATTGCATCGGGGC CCCTATGGTCGGCATGCAGGTGGGAGCGTAAAGGGACCCCCCACGCTTTT GGTCGCAATTCTTTCACCTCACCAATGTGAAAACCACACAAGCATTCGGG TGTCTTGTTATGCACAGTCAGCCACAGCATGGATCCCCTATCGTTTGGCA CGTTTTTGTTTTTGTTTTTTACTTTGAAAGGGTGGTCGACGCTTGCTTTT TCTCGCTTTGATCGTCGACGATGTTCCAATGGAAATAAGACGTGATTAGG ACGGAATCAAAGCCCCCCCCTCCCACCCCGAACGGAAATGTGGCTAACGA AGAGCAGATGATGGATGATAGCTACCCGGCACCGTGGTACCTGCAGTTGT TCTGCCAGCCCCTCGACGACGTCCGAGCCTACTTCGGTGAAAAGCTGGCT TTCTACTTTGCCTGGCTGGGGTTTTACGGGTGAGAATCTAGATCTTTTGA GAGATCTGGTTAGTGTCGGGGCGTTGTATGTTTGGTCCGAGCAACACGCC CGATCGCGATCGGGGACAATCAGATAATGTATTCGCGTGGAAAACGGTAC AAAGTCCCTTCCTGTAGTAGTACTCCAGGCGCCTGGTCGGGCATAGTGTC ACCCCCACGGCGTTGTTTTACACACCAGGTGGGCATTGGTCATCCCAGCC TTCTACGGGATCGCGGTTGAGATATACCTTCTGTACGCAGGGATCACCTT TGTCGAGGAGGGCTGGGACTACGCACAGGTGGGCATCGTATTGTAGCATG CGCGCGAGGTAGAGCAGAAACTTCACGACGGTGGTAATGTCGAACTGCGC TGTAGTTTACTCTTCGGTGATATATTATGTGCAGATCCGGGGAAATATCT TATGCGGCGCGCCCCGAAAAGATCGCTGGCTCGAGGAAAGCTACGCACTG AGTTCGCGATCAGTTGGAGTATCTTGAAATGTCGGTGGGGGAAACAGGTT ATAATATAGTATATATTTTTGTTATTTGTTTGGTTAAAAATTATGCGCGA ATCGTGCTCGCGGAGTAGCTCCGAACAAAAACGCATCATCAGCACTCAAC GGACGGTCGATCAATTTCTAGGACTATGTATCGTTGCCGATATACGCCAA TATATCGCACGATACAATATTATATATATATCGGCTGGCCGTTGGGTACA TGCATCGTACACGATACATGCCAATATATCGGTGTGTTTGCTCACTGCTA GCGGGGCCTCTCACCAGCCGGGTGGCTGTTGGGGGCTCCGCCGCGTTTTT TCTATCACAAAACCCGCGGCGGAGATTCCTCGCCTCGCTTGGATGCCGAT ACACAACGCTATAAATTTAGTCCGCGGCATTTTTGAGCCTTCAGGATAAC GTGTTCCAATTGTACACCAATGAGGTATACCAAACACAAGTACTCGTAGC CGCGGCGGAACCGTGCCCAACGCCGTGGTCAGCTTCGAAGGTTTTTTCAT TAACATTGTTTGTTCTACGCGACAGGTTTCAATGACAGTCGGTGTGGTGT TGTGGGGCACGATTTACCAGGAGCTATGGGCTCGAGAGCAGAAGCTTGTT GCCGTGAAGTGGGGAACGTCTGGCTTCGAAGAAGTCGAGAAAGACCGGTG GGTACAAATGTGTCGAGTATGCCTTGGCGTTCTCTCTACGGTTGATGTCA TCATCTCGTCGCTCGTTGAAACGTCAATGTTCCAAAGTTGCGCAGCGTGC GACTCGTAGAAGATCTCATTTTTAAAGACACTGCAACATGGGTACCACCG CCGCGCATACATGATCAAAAGCGTCTGCGCCGACAAGGTATCATCTTGTG TAGAATACATGAGTGGTGTTGTTTCACCCTAAAGTGCGCGGTCGCGACCT AAAGTGCGTGGTCGTGATGGCCCGAATACGTCGTACTCATCGTATCATAC AAATCACGAAGTGCGCGAAGTATGAAGGGGGCATGGATTCGACCCACGTA GCGTCCCGGAAAAACACTGGGTCAGTTGAATCCCCCAATACTCATTCGTT AGAGAGACGCAGAGCGTTGGACCCTAGTCCACGCGGAGGTTAAAATGTTC TCTCAGCCGTACAAGGTCACTCTCGAAAGTAGTGTTTTTGAAGACGTGTT CTCGATCTCTAAAGCTTATCCGAAATGAGTTTTTTTGGTAGAAATGCGCT TACAATATATTAGAGAGGTTTTCCTCGACCGAGAGAGGGGTATCCTTGAG GGGAGAGTATATTCCATGTGCAAAAGGCCTACGTAGCAGCGATTTTCGTA GGTGACATCTCCTGACGGTGCCCGCTCTGCCCGTGCATAGCTCCACGAAA GAACACCCATCCTTTCAGTCGTCTGGATAACACTACTTCATTATATATCG CCGCCTTTCACCGTTTCAGGCCACAATTCGAGGGCGACAAAGACAGTCCC GACGGAGGACGGCGCCGTTCCCCGGTGACAAACACCTTCGAAACCCACTT CCCAGACTATAAGCGGAAGGTAAATTGTATGTGTTACCTAACCAAAGCAA AGACACTCAGGAAAGCACCCACGGTTTAGAATTTGCATGTAGACCCCATC CAGTGCAGCCACTATTTGTACCTCGTATTAGCACCTCGCCGATCTACTAC ATTATATTGTATGCGAGATAGATAACACAACCAAACGACTGATTTTGGCC GGCGGTTTACTCAAGGATGACGACGATATCGTCTCTAACGGCGCACTCGA TATGATACCGTGTGTCTTGTCCCGGCACCAAAGATCCGCCAAGCGCTGGG ACTGGTAGTGGTCATGCTTTTTGTCGTCGCTCTGCTAGCTCTGGTCTGGA TGGTGGAGTGGCTTGAGCATTACCTCGAGGACGAC
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Coding sequence (CDS) from alignment at H-elongata_contig9016:3..3237-

>mRNA_H-elongata_contig9016.16502.1 ID=mRNA_H-elongata_contig9016.16502.1|Name=mRNA_H-elongata_contig9016.16502.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1596bp|location=Sequence derived from alignment at H-elongata_contig9016:3..3237- (Himanthalia elongata Himel1 dioecious)
ACGTACCCAAGCATCCGCGGACGCACCCTGTTCCGCCCGAAGGACAGACT
GGCTTTGACCAAGTCCATTATGTCCGGCTTCTTCGACATGGGCGTGCTTC
AGGCGCGGGGGGTGGTCGACGCTGTGTGTGCCCTGCATGACGCCAACCGT
GGAGAGCCCCTTACCACCGAGACGTACCCAAGCATCCGCGGACGCACCCT
GTTCCGCCCGAAGGACAGACTGGCTTTGACCAAGTCCATTATGTCCGGCT
TCTTCGACATGGGCGTGCTTCAGGCGCGGGGGGTGGTCGACGCTGTGTGT
GCCCTGCATGACGCCAACCGTGGAGAGCCCCTTACCACCGAGGTTCTACA
CAAGCGGTGGACGCTAGGCCTCTGTCACGAGAGCAAAGATTGCATCGGGG
CCCCTATGGTCGGCATGCAGGTTCTACACAAGCGGTGGACGCTAGGCCTC
TGTCACGAGAGCAAAGATTGCATCGGGGCCCCTATGGTCGGCATGCAGCA
GATGATGGATGATAGCTACCCGGCACCGTGGTACCTGCAGTTGTTCTGCC
AGCCCCTCGACGACGTCCGAGCCTACTTCGGTGAAAAGCTGGCTTTCTAC
TTTGCCTGGCTGGGGTTTTACGGCAGATGATGGATGATAGCTACCCGGCA
CCGTGGTACCTGCAGTTGTTCTGCCAGCCCCTCGACGACGTCCGAGCCTA
CTTCGGTGAAAAGCTGGCTTTCTACTTTGCCTGGCTGGGGTTTTACGGGT
GGGCATTGGTCATCCCAGCCTTCTACGGGATCGCGGTTGAGATATACCTT
CTGTACGCAGGGATCACCTTTGTCGAGGAGGGCTGGGACTACGCACAGGT
GGGCATTGGTCATCCCAGCCTTCTACGGGATCGCGGTTGAGATATACCTT
CTGTACGCAGGGATCACCTTTGTCGAGGAGGGCTGGGACTACGCACAGGT
TTCAATGACAGTCGGTGTGGTGTTGTGGGGCACGATTTACCAGGAGCTAT
GGGCTCGAGAGCAGAAGCTTGTTGCCGTGAAGTGGGGAACGTCTGGCTTC
GAAGAAGTCGAGAAAGACCGGTTTCAATGACAGTCGGTGTGGTGTTGTGG
GGCACGATTTACCAGGAGCTATGGGCTCGAGAGCAGAAGCTTGTTGCCGT
GAAGTGGGGAACGTCTGGCTTCGAAGAAGTCGAGAAAGACCGGCCACAAT
TCGAGGGCGACAAAGACAGTCCCGACGGAGGACGGCGCCGTTCCCCGGTG
ACAAACACCTTCGAAACCCACTTCCCAGACTATAAGCGGAAGGCCACAAT
TCGAGGGCGACAAAGACAGTCCCGACGGAGGACGGCGCCGTTCCCCGGTG
ACAAACACCTTCGAAACCCACTTCCCAGACTATAAGCGGAAGATCCGCCA
AGCGCTGGGACTGGTAGTGGTCATGCTTTTTGTCGTCGCTCTGCTAGCTC
TGGTCTGGATGGTGGAGTGGCTTGAGCATTACCTCGAGGACGACATCCGC
CAAGCGCTGGGACTGGTAGTGGTCATGCTTTTTGTCGTCGCTCTGCTAGC
TCTGGTCTGGATGGTGGAGTGGCTTGAGCATTACCTCGAGGACGAC
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