mRNA_H-elongata_contig9014.16501.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9014.16501.1
Unique NamemRNA_H-elongata_contig9014.16501.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig9014.16501.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 8.730e-31
Identity = 59/144 (40.97%), Postives = 91/144 (63.19%), Query Frame = 1
Query:   37 IPKGANIVSGRWVRSWKTDERGNVLKPKSYMVTRGCSQEYRVDYLKVFAPTPLTSSVKLDVGVAVKNVWGLRYFDVAKAFIQADLDFDVYSKLHQGCGDMSGRTVLLKSAAYGLHQSGRRWNLRFTKTFVEKIGMEQCKVDLCI 468
            +P G N++  RWV  WK DE G ++K K+ +V +G  Q+Y VDYL+ F+PT   +S +L V +A K    L ++D+ +AF+Q++LD++V+ KL  GCG MSG+ V L  + YGL Q+ R +  R     +++IG EQ   D C+
Sbjct:  753 VPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSE-LKRIGFEQSMSDPCV 895          
BLAST of mRNA_H-elongata_contig9014.16501.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 2.860e-30
Identity = 57/144 (39.58%), Postives = 89/144 (61.81%), Query Frame = 1
Query:   37 IPKGANIVSGRWVRSWKTDERGNVLKPKSYMVTRGCSQEYRVDYLKVFAPTPLTSSVKLDVGVAVKNVWGLRYFDVAKAFIQADLDFDVYSKLHQGCGDMSGRTVLLKSAAYGLHQSGRRWNLRFTKTFVEKIGMEQCKVDLCI 468
            +P G N++  RWV  W  DE   ++K K+ +V +G  Q+Y VDYL+ F+PT   +S +L V +A K    L ++D+ +AF+Q++LD++V+ KL  GCG MSG+ V L  + YGL Q+ R +  R     +++IG EQ   D C+
Sbjct:   20 VPIGCNVIDARWVFKWNADETAKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSE-LKRIGFEQSMSDPCV 162          
BLAST of mRNA_H-elongata_contig9014.16501.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 5.450e-30
Identity = 58/144 (40.28%), Postives = 90/144 (62.50%), Query Frame = 1
Query:   37 IPKGANIVSGRWVRSWKTDERGNVLKPKSYMVTRGCSQEYRVDYLKVFAPTPLTSSVKLDVGVAVKNVWGLRYFDVAKAFIQADLDFDVYSKLHQGCGDMSGRTVLLKSAAYGLHQSGRRWNLRFTKTFVEKIGMEQCKVDLCI 468
            +P   N++  RWV  WK DE G ++K K+ +V +G  Q+Y VDYL+ F+PT   +S +L V +A K    L ++D+ +AF+Q++LD++V+ KL  GCG MSG+ V L  + YGL Q+ R +  R     +++IG EQ   D C+
Sbjct:  486 VPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSE-LKRIGFEQSMSDPCV 628          
BLAST of mRNA_H-elongata_contig9014.16501.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 3.570e-29
Identity = 57/144 (39.58%), Postives = 89/144 (61.81%), Query Frame = 1
Query:   37 IPKGANIVSGRWVRSWKTDERGNVLKPKSYMVTRGCSQEYRVDYLKVFAPTPLTSSVKLDVGVAVKNVWGLRYFDVAKAFIQADLDFDVYSKLHQGCGDMSGRTVLLKSAAYGLHQSGRRWNLRFTKTFVEKIGMEQCKVDLCI 468
            +P G N++  RWV  WK DE G ++K K+ +V +G  Q+Y VDYL+ F+PT   +S +L V +A K    L ++D+ +AF+Q++LD +V+ K+  GCG MS + V L  + YGL Q+ R +  R     +++IG EQ   D C+
Sbjct:  717 VPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSE-LKRIGFEQSMSDPCV 859          
BLAST of mRNA_H-elongata_contig9014.16501.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 3.620e-29
Identity = 57/144 (39.58%), Postives = 89/144 (61.81%), Query Frame = 1
Query:   37 IPKGANIVSGRWVRSWKTDERGNVLKPKSYMVTRGCSQEYRVDYLKVFAPTPLTSSVKLDVGVAVKNVWGLRYFDVAKAFIQADLDFDVYSKLHQGCGDMSGRTVLLKSAAYGLHQSGRRWNLRFTKTFVEKIGMEQCKVDLCI 468
            +P G N++  RWV  WK DE G ++K K+ +V +G  Q+Y VDYL+ F+PT   +S +L V +A K    L ++D+ +AF+Q++LD +V+ K+  GCG MS + V L  + YGL Q+ R +  R     +++IG EQ   D C+
Sbjct:  927 VPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSE-LKRIGFEQSMSDPCV 1069          
BLAST of mRNA_H-elongata_contig9014.16501.1 vs. uniprot
Match: A0A6H5KMK9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK9_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 5.090e-29
Identity = 54/146 (36.99%), Postives = 89/146 (60.96%), Query Frame = 1
Query:   31 KDIPKGANIVSGRWVRSWKTDERGNVLKPKSYMVTRGCSQEYRVDYLKVFAPTPLTSSVKLDVGVAVKNVWGLRYFDVAKAFIQADLDFDVYSKLHQGCGDMSGRTVLLKSAAYGLHQSGRRWNLRFTKTFVEKIGMEQCKVDLCI 468
            +D  +G N++S +WV SWK DE G  ++ K+ +V RG +Q   VD+ + F+P P  +S++L   +A    W L +FD  +AF+Q++LD  V+ +L  GCG +SG+ V L+ + YGL Q+ R W+    +  ++ +G E C  D C+
Sbjct:  140 RDQARGTNVISAKWVFSWKRDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTWHHHLMRG-MKSLGFEPCAADACV 284          
BLAST of mRNA_H-elongata_contig9014.16501.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 8.720e-29
Identity = 57/144 (39.58%), Postives = 89/144 (61.81%), Query Frame = 1
Query:   37 IPKGANIVSGRWVRSWKTDERGNVLKPKSYMVTRGCSQEYRVDYLKVFAPTPLTSSVKLDVGVAVKNVWGLRYFDVAKAFIQADLDFDVYSKLHQGCGDMSGRTVLLKSAAYGLHQSGRRWNLRFTKTFVEKIGMEQCKVDLCI 468
            +P G N++  RWV  WK DE G ++K K+ +V +G  Q+Y VDY++ F+PT   +S +L V +A K    L ++D+ +AF+Q++LD++V+ KL  GCG MSG+ V L  + Y L Q  R +  R     +++IG EQ   D C+
Sbjct:   20 VPIGCNVIDARWVFKWKADEIGKIVKAKARLVAKGFKQKYGVDYVETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYELKQESRTFYNRLVSE-LKRIGFEQSMSDPCV 162          
BLAST of mRNA_H-elongata_contig9014.16501.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 2.270e-28
Identity = 54/146 (36.99%), Postives = 88/146 (60.27%), Query Frame = 1
Query:   31 KDIPKGANIVSGRWVRSWKTDERGNVLKPKSYMVTRGCSQEYRVDYLKVFAPTPLTSSVKLDVGVAVKNVWGLRYFDVAKAFIQADLDFDVYSKLHQGCGDMSGRTVLLKSAAYGLHQSGRRWNLRFTKTFVEKIGMEQCKVDLCI 468
            +D  +G N++S +WV SWK DE G  ++ K+ +V RG +Q   VD+ + F+P P  +S++L   +A    W L +FD  +AF+Q++LD  V+ +L  GCG +SG+ V L+   YGL Q+ R W+    +  ++ +G E C  D C+
Sbjct:  815 RDKARGTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRGLYGLKQASRTWHHHLMRG-MKSLGFEPCAADACV 959          
BLAST of mRNA_H-elongata_contig9014.16501.1 vs. uniprot
Match: A0A6H5JUH4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUH4_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 7.590e-28
Identity = 54/143 (37.76%), Postives = 89/143 (62.24%), Query Frame = 1
Query:   40 PKGANIVSGRWVRSWKTDERGNVLKPKSYMVTRGCSQEYRVDYLKVFAPTPLTSSVKLDVGVAVKNVWGLRYFDVAKAFIQADLDFDVYSKLHQGCGDMSGRTVLLKSAAYGLHQSGRRWNLRFTKTFVEKIGMEQCKVDLCI 468
            P G N++  RWV +W+ D+ G ++K K+ +V +G  Q+  VDYL+ F+PT   +S++L V +A K      +FD+ +AF+Q++LD +V++KL  GC  MSG+ V L  +  GL Q+ R +  RF    +++I +EQ   D C+
Sbjct:   54 PMGCNVIDARWVYTWRADKTGKIVKAKARLVAKGVKQKNCVDYLETFSPTANAASIRLLVALACKYDLEFLHFDIEQAFVQSELDHEVFTKLPPGCESMSGKVVRLDKSLDGLRQACRTFLKRFVSD-LKRISVEQSPSDPCV 195          
BLAST of mRNA_H-elongata_contig9014.16501.1 vs. uniprot
Match: A0A6H5K9I1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I1_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.960e-27
Identity = 56/146 (38.36%), Postives = 86/146 (58.90%), Query Frame = 1
Query:   34 DIPKGANIVSGRWVRSWKTDERGNVLKPKSYMVTRGCSQEYRVDYLKVFAPTPLTSSVKLDVGVAVKNVWGLRYFDVAKAFIQADLDFDVYSKLHQGCGDMSGRTVLLKSAAYGLHQSGRRWNLRFTKTFVEKIGMEQCKVDLCIF 471
            D+ +  +++  +WV  WK+DE G     KS +V RG  Q   VD  + +APT   SSV+L   +A +    LR+FD+ +AF+Q+DLD DV+ +L +GCG +SG  V L  + YGL Q+ R+W+    +  +  +G  QC  D C+F
Sbjct:  494 DLRQPESVIKAKWVFDWKSDEYGWPTNVKSRLVARGDMQRVHVDCGETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLI-CLGFIQCMADTCVF 638          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9014.16501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRL9_9PHAE8.730e-3140.97Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JQD0_9PHAE2.860e-3039.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKK1_9PHAE5.450e-3040.28Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L3I1_9PHAE3.570e-2939.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE3.620e-2939.58Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMK9_9PHAE5.090e-2936.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9B2_9PHAE8.720e-2939.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV09_9PHAE2.270e-2836.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUH4_9PHAE7.590e-2837.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9I1_9PHAE1.960e-2738.36Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9014contigH-elongata_contig9014:5780..6250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score95.9
Seed ortholog evalue1.8e-17
Seed eggNOG ortholog7029.ACYPI086006-PA
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3AUQ8@33154,3C4T5@33208,3DKGH@33213,423D9@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size471
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931301.5868511-CDS-H-elongata_contig9014:5779..62501622931301.5868511-CDS-H-elongata_contig9014:5779..6250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9014 5780..6250 -
1691679780.1557872-CDS-H-elongata_contig9014:5779..62501691679780.1557872-CDS-H-elongata_contig9014:5779..6250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9014 5780..6250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9014.16501.1prot_H-elongata_contig9014.16501.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9014 5780..6250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9014.16501.1

>prot_H-elongata_contig9014.16501.1 ID=prot_H-elongata_contig9014.16501.1|Name=mRNA_H-elongata_contig9014.16501.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp
DVNAFRSVEKKDIPKGANIVSGRWVRSWKTDERGNVLKPKSYMVTRGCSQ
EYRVDYLKVFAPTPLTSSVKLDVGVAVKNVWGLRYFDVAKAFIQADLDFD
VYSKLHQGCGDMSGRTVLLKSAAYGLHQSGRRWNLRFTKTFVEKIGMEQC
KVDLCIF
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mRNA from alignment at H-elongata_contig9014:5780..6250-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9014.16501.1 ID=mRNA_H-elongata_contig9014.16501.1|Name=mRNA_H-elongata_contig9014.16501.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=471bp|location=Sequence derived from alignment at H-elongata_contig9014:5780..6250- (Himanthalia elongata Himel1 dioecious)
GATGTCAACGCTTTCCGATCCGTTGAGAAGAAGGACATACCGAAGGGTGC TAATATTGTGTCTGGTCGGTGGGTTCGTTCCTGGAAAACGGATGAACGTG GAAATGTCCTCAAACCTAAGTCGTATATGGTCACAAGAGGATGTAGTCAG GAATACCGCGTCGACTACTTGAAAGTCTTTGCACCAACACCGTTGACGTC GAGTGTGAAACTTGATGTTGGAGTAGCAGTAAAGAATGTTTGGGGGTTGC GATATTTTGATGTAGCAAAGGCTTTCATTCAGGCGGATCTTGATTTTGAC GTTTACTCGAAGTTGCATCAAGGCTGTGGTGATATGAGCGGTAGAACAGT ATTGCTTAAATCAGCTGCGTATGGTCTCCACCAGTCTGGCCGCCGATGGA ATCTCCGGTTTACAAAGACATTTGTCGAGAAAATTGGCATGGAACAATGC AAGGTAGATCTCTGTATTTTT
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Coding sequence (CDS) from alignment at H-elongata_contig9014:5780..6250-

>mRNA_H-elongata_contig9014.16501.1 ID=mRNA_H-elongata_contig9014.16501.1|Name=mRNA_H-elongata_contig9014.16501.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig9014:5780..6250- (Himanthalia elongata Himel1 dioecious)
GATGTCAACGCTTTCCGATCCGTTGAGAAGAAGGACATACCGAAGGGTGC
TAATATTGTGTCTGGTCGGTGGGTTCGTTCCTGGAAAACGGATGAACGTG
GAAATGTCCTCAAACCTAAGTCGTATATGGTCACAAGAGGATGTAGTCAG
GAATACCGCGTCGACTACTTGAAAGTCTTTGCACCAACACCGTTGACGTC
GAGTGTGAAACTTGATGTTGGAGTAGCAGTAAAGAATGTTTGGGGGTTGC
GATATTTTGATGTAGCAAAGGCTTTCATTCAGGCGGATCTTGATTTTGAC
GTTTACTCGAAGTTGCATCAAGGCTGTGGTGATATGAGCGGTAGAACAGT
ATTGCTTAAATCAGCTGCGTATGGTCTCCACCAGTCTGGCCGCCGATGGA
ATCTCCGGTTTACAAAGACATTTGTCGAGAAAATTGGCATGGAACAATGC
AAGGTAGATCTCTGTATTTTTGATGTCAACGCTTTCCGATCCGTTGAGAA
GAAGGACATACCGAAGGGTGCTAATATTGTGTCTGGTCGGTGGGTTCGTT
CCTGGAAAACGGATGAACGTGGAAATGTCCTCAAACCTAAGTCGTATATG
GTCACAAGAGGATGTAGTCAGGAATACCGCGTCGACTACTTGAAAGTCTT
TGCACCAACACCGTTGACGTCGAGTGTGAAACTTGATGTTGGAGTAGCAG
TAAAGAATGTTTGGGGGTTGCGATATTTTGATGTAGCAAAGGCTTTCATT
CAGGCGGATCTTGATTTTGACGTTTACTCGAAGTTGCATCAAGGCTGTGG
TGATATGAGCGGTAGAACAGTATTGCTTAAATCAGCTGCGTATGGTCTCC
ACCAGTCTGGCCGCCGATGGAATCTCCGGTTTACAAAGACATTTGTCGAG
AAAATTGGCATGGAACAATGCAAGGTAGATCTCTGTATTTTT
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