prot_H-elongata_contig90137.16500.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig90137.16500.1
Unique Name	prot_H-elongata_contig90137.16500.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	114

Homology

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BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot
Match: A0A6H5K085_9PHAE (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K085_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 1.020e-72
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0

Query:    1 MRHPIRLYTRYVDKIFMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFEV 114
            MRHPIRLYTRYVDKI+MLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFEV
Sbjct: 1188 MRHPIRLYTRYVDKIYMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFEV 1301

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BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot
Match: A0A2H1CAG4_FASHE (RRM_4 domain-containing protein n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1CAG4_FASHE)

HSP 1 Score: 212 bits (539), Expect = 9.190e-68
Identity = 93/111 (83.78%), Postives = 102/111 (91.89%), Query Frame = 0

Query:    3 HPIRLYTRYVDKIFMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFE 113
            HPIRLY RYVD+ +M FRF AEEARDLIQRYLTEHPDPNNEN+VGYNN+KCWPRD RMRLMKHDVNLGRA FWDIKNRLPRS+TT++WD SFVSVYS+DNPNLL+ M GFE
Sbjct:   75 HPIRLYCRYVDRFWMFFRFSAEEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDSRMRLMKHDVNLGRAVFWDIKNRLPRSITTIDWDSSFVSVYSKDNPNLLFAMCGFE 185

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BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot
Match: A0A7J6V9J9_THATH (Pre-mrna-processing-splicing factor 8a n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6V9J9_THATH)

HSP 1 Score: 210 bits (534), Expect = 1.830e-67
Identity = 90/114 (78.95%), Postives = 106/114 (92.98%), Query Frame = 0

Query:    1 MRHPIRLYTRYVDKIFMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFEV 114
            MRHPIR Y+RY+D++ +LFRF  EEARDLIQRYLTEHPDPNNEN+VGYNN+KCWPRD RMRLMKHDVNLGR+ FWD+KNR PRS+TT+EW++SFVSVYS+DNPNLL++M GFEV
Sbjct:    1 MRHPIRFYSRYIDRVHILFRFTCEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRFPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEV 114

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BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot
Match: G3IPR4_CRIGR (Pre-mRNA-processing-splicing factor 8 n=1 Tax=Cricetulus griseus TaxID=10029 RepID=G3IPR4_CRIGR)

HSP 1 Score: 210 bits (534), Expect = 2.160e-67
Identity = 92/111 (82.88%), Postives = 104/111 (93.69%), Query Frame = 0

Query:    3 HPIRLYTRYVDKIFMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFE 113
            HPIRL+ RY+D+I + FRF A+EARDLIQRYLTEHPDPNNEN+VGYNN+KCWPRD RMRLMKHDVNLGRA FWDIKNRLPRSVTTV+W++SFVSVYS+DNPNLL+NM GFE
Sbjct:   17 HPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFE 127

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BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot
Match: A0A7S2STJ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STJ4_9STRA)

HSP 1 Score: 227 bits (579), Expect = 2.610e-67
Identity = 100/113 (88.50%), Postives = 111/113 (98.23%), Query Frame = 0

Query:    2 RHPIRLYTRYVDKIFMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFEV 114
            +HPIR+YTRYVDK+F++FRFDAEEARDLIQRYLTEHPDPNNEN+VGYNN+KCWPRD RMRLMKHDVNLGRATFWDIKNRLPRSVTT+EW+DSFVSVYS+DNPNLL+NM GFEV
Sbjct:  467 KHPIRMYTRYVDKVFIVFRFDAEEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDCRMRLMKHDVNLGRATFWDIKNRLPRSVTTIEWEDSFVSVYSKDNPNLLFNMCGFEV 579

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BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot
Match: UPI00064A36EB (pre-mRNA-splicing factor 8 homolog n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI00064A36EB)

HSP 1 Score: 217 bits (552), Expect = 4.150e-67
Identity = 94/111 (84.68%), Postives = 106/111 (95.50%), Query Frame = 0

Query:    3 HPIRLYTRYVDKIFMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFE 113
            HPIRLY RY+D+++M FRFDAEEARDLIQRYLTEHPDPNNEN+VGYNN+KCWPRD RMRLMKHDVNLGRA FWDIKNRLPRSVTT+EW+ SFVSVYS+DNPNLL++M+GFE
Sbjct:  225 HPIRLYCRYIDRVWMFFRFDAEEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDSRMRLMKHDVNLGRAVFWDIKNRLPRSVTTIEWESSFVSVYSKDNPNLLFDMAGFE 335

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BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot
Match: A0A836C932_9STRA (NUC071 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C932_9STRA)

HSP 1 Score: 227 bits (579), Expect = 8.580e-67
Identity = 101/113 (89.38%), Postives = 111/113 (98.23%), Query Frame = 0

Query:    2 RHPIRLYTRYVDKIFMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFEV 114
            RHPIRLYTRY+DK++MLFRFDAE++RDLIQRYLTEHPDPNNENVVGYNNRKCWPRD RMRLMKHDVNLGRATFWDIKNRLPRSVTT+EW++SFVSVYSRDNPN+L+NM GFEV
Sbjct: 1128 RHPIRLYTRYIDKVYMLFRFDAEDSRDLIQRYLTEHPDPNNENVVGYNNRKCWPRDCRMRLMKHDVNLGRATFWDIKNRLPRSVTTIEWNNSFVSVYSRDNPNVLFNMCGFEV 1240

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BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot
Match: UPI0007DA50AA (pre-mRNA-processing-splicing factor 8 n=1 Tax=Cricetulus griseus TaxID=10029 RepID=UPI0007DA50AA)

HSP 1 Score: 210 bits (534), Expect = 1.680e-66
Identity = 92/111 (82.88%), Postives = 104/111 (93.69%), Query Frame = 0

Query:    3 HPIRLYTRYVDKIFMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFE 113
            HPIRL+ RY+D+I + FRF A+EARDLIQRYLTEHPDPNNEN+VGYNN+KCWPRD RMRLMKHDVNLGRA FWDIKNRLPRSVTTV+W++SFVSVYS+DNPNLL+NM GFE
Sbjct:   62 HPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFE 172

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BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot
Match: A0A2G9T7E9_TELCI (Uncharacterized protein (Fragment) n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9T7E9_TELCI)

HSP 1 Score: 211 bits (538), Expect = 1.810e-66
Identity = 91/111 (81.98%), Postives = 107/111 (96.40%), Query Frame = 0

Query:    3 HPIRLYTRYVDKIFMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFE 113
            HPIRLY RY+D+I+++FRF A+EARDLIQRYLTEHPDPNNEN+VGYNN+KCWPRD RMRLMKHDVNLGRA FWDIKNRLPRSVTT+EW+++FVSVYS+DNPNLL++M+GFE
Sbjct:  111 HPIRLYCRYIDRIWIMFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTIEWENAFVSVYSKDNPNLLFDMAGFE 221

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BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot
Match: A0A183BDH7_9TREM (Uncharacterized protein n=1 Tax=Echinostoma caproni TaxID=27848 RepID=A0A183BDH7_9TREM)

HSP 1 Score: 211 bits (538), Expect = 4.940e-66
Identity = 93/111 (83.78%), Postives = 102/111 (91.89%), Query Frame = 0

Query:    3 HPIRLYTRYVDKIFMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFE 113
            HPIRLY RYVD+ +M FRF AEEARDLIQRYLTEHPDPNNEN+VGYNN+KCWPRD RMRLMKHDVNLGRA FWDIKNRLPRS+TT++WD SFVSVYS+DNPNLL+ M GFE
Sbjct:  127 HPIRLYCRYVDRFWMFFRFTAEEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDSRMRLMKHDVNLGRAVFWDIKNRLPRSITTIDWDSSFVSVYSKDNPNLLFAMCGFE 237

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot

BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K085_9PHAE	1.020e-72	99.12	MPN domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A2H1CAG4_FASHE	9.190e-68	83.78	RRM_4 domain-containing protein n=1 Tax=Fasciola h...	[more]
A0A7J6V9J9_THATH	1.830e-67	78.95	Pre-mrna-processing-splicing factor 8a n=1 Tax=Tha...	[more]
G3IPR4_CRIGR	2.160e-67	82.88	Pre-mRNA-processing-splicing factor 8 n=1 Tax=Cric...	[more]
A0A7S2STJ4_9STRA	2.610e-67	88.50	Hypothetical protein (Fragment) n=1 Tax=Rhizochrom...	[more]
UPI00064A36EB	4.150e-67	84.68	pre-mRNA-splicing factor 8 homolog n=1 Tax=Sorex a...	[more]
A0A836C932_9STRA	8.580e-67	89.38	NUC071 domain-containing protein n=1 Tax=Tribonema...	[more]
UPI0007DA50AA	1.680e-66	82.88	pre-mRNA-processing-splicing factor 8 n=1 Tax=Cric...	[more]
A0A2G9T7E9_TELCI	1.810e-66	81.98	Uncharacterized protein (Fragment) n=1 Tax=Telador...	[more]
A0A183BDH7_9TREM	4.940e-66	83.78	Uncharacterized protein n=1 Tax=Echinostoma capron...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027652	Pre-mRNA-processing-splicing factor 8	PANTHER	PTHR11140	PRE-MRNA SPLICING FACTOR PRP8	coord: 2..114
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..112

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig90137	contig	H-elongata_contig90137:1172..1962 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig90137.16500.1	mRNA_H-elongata_contig90137.16500.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig90137 1172..1992 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig90137.16500.1 ID=prot_H-elongata_contig90137.16500.1|Name=mRNA_H-elongata_contig90137.16500.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MRHPIRLYTRYVDKIFMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNN
RKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSR
DNPNLLYNMSGFEV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR027652	PRP8
IPR012337	RNaseH-like_sf