mRNA_H-elongata_contig90137.16500.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig90137.16500.1
Unique NamemRNA_H-elongata_contig90137.16500.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot
Match: A0A6H5K085_9PHAE (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K085_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 1.550e-79
Identity = 123/124 (99.19%), Postives = 124/124 (100.00%), Query Frame = 1 
Query:    1 YLSFRDTPTEMRHPIRLYTRYVDKIFMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFEV 372
            YLSFRDTPTEMRHPIRLYTRYVDKI+MLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFEV
Sbjct: 1178 YLSFRDTPTEMRHPIRLYTRYVDKIYMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFEV 1301
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BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot
Match: A0A2H1CAG4_FASHE (RRM_4 domain-containing protein n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1CAG4_FASHE)

HSP 1 Score: 224 bits (571), Expect = 1.890e-72
Identity = 99/123 (80.49%), Postives = 111/123 (90.24%), Query Frame = 1 
Query:    1 YLSFRDTPTEMRHPIRLYTRYVDKIFMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFE 369
            +L F+DT TE+ HPIRLY RYVD+ +M FRF AEEARDLIQRYLTEHPDPNNEN+VGYNN+KCWPRD RMRLMKHDVNLGRA FWDIKNRLPRS+TT++WD SFVSVYS+DNPNLL+ M GFE
Sbjct:   63 FLQFQDTATEVAHPIRLYCRYVDRFWMFFRFSAEEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDSRMRLMKHDVNLGRAVFWDIKNRLPRSITTIDWDSSFVSVYSKDNPNLLFAMCGFE 185
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BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot
Match: A0A7S2STJ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STJ4_9STRA)

HSP 1 Score: 240 bits (612), Expect = 8.800e-72
Identity = 107/124 (86.29%), Postives = 118/124 (95.16%), Query Frame = 1 
Query:    1 YLSFRDTPTEMRHPIRLYTRYVDKIFMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFEV 372
            YL FRD  TE +HPIR+YTRYVDK+F++FRFDAEEARDLIQRYLTEHPDPNNEN+VGYNN+KCWPRD RMRLMKHDVNLGRATFWDIKNRLPRSVTT+EW+DSFVSVYS+DNPNLL+NM GFEV
Sbjct:  456 YLCFRDVATETKHPIRMYTRYVDKVFIVFRFDAEEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDCRMRLMKHDVNLGRATFWDIKNRLPRSVTTIEWEDSFVSVYSKDNPNLLFNMCGFEV 579
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BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot
Match: G3IPR4_CRIGR (Pre-mRNA-processing-splicing factor 8 n=1 Tax=Cricetulus griseus TaxID=10029 RepID=G3IPR4_CRIGR)

HSP 1 Score: 221 bits (562), Expect = 1.780e-71
Identity = 98/123 (79.67%), Postives = 112/123 (91.06%), Query Frame = 1 
Query:    1 YLSFRDTPTEMRHPIRLYTRYVDKIFMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFE 369
            +LSF+D  TE  HPIRL+ RY+D+I + FRF A+EARDLIQRYLTEHPDPNNEN+VGYNN+KCWPRD RMRLMKHDVNLGRA FWDIKNRLPRSVTTV+W++SFVSVYS+DNPNLL+NM GFE
Sbjct:    5 FLSFQDIATEAAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFE 127
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BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot
Match: A0A836C932_9STRA (NUC071 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C932_9STRA)

HSP 1 Score: 241 bits (614), Expect = 2.520e-71
Identity = 108/124 (87.10%), Postives = 119/124 (95.97%), Query Frame = 1 
Query:    1 YLSFRDTPTEMRHPIRLYTRYVDKIFMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFEV 372
            YL +RDT TE RHPIRLYTRY+DK++MLFRFDAE++RDLIQRYLTEHPDPNNENVVGYNNRKCWPRD RMRLMKHDVNLGRATFWDIKNRLPRSVTT+EW++SFVSVYSRDNPN+L+NM GFEV
Sbjct: 1117 YLCYRDTATEARHPIRLYTRYIDKVYMLFRFDAEDSRDLIQRYLTEHPDPNNENVVGYNNRKCWPRDCRMRLMKHDVNLGRATFWDIKNRLPRSVTTIEWNNSFVSVYSRDNPNVLFNMCGFEV 1240
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BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot
Match: A0A183BDH7_9TREM (Uncharacterized protein n=1 Tax=Echinostoma caproni TaxID=27848 RepID=A0A183BDH7_9TREM)

HSP 1 Score: 224 bits (570), Expect = 1.100e-70
Identity = 99/123 (80.49%), Postives = 111/123 (90.24%), Query Frame = 1 
Query:    1 YLSFRDTPTEMRHPIRLYTRYVDKIFMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFE 369
            +L F+DT TE+ HPIRLY RYVD+ +M FRF AEEARDLIQRYLTEHPDPNNEN+VGYNN+KCWPRD RMRLMKHDVNLGRA FWDIKNRLPRS+TT++WD SFVSVYS+DNPNLL+ M GFE
Sbjct:  115 FLQFQDTATEVAHPIRLYCRYVDRFWMFFRFTAEEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDSRMRLMKHDVNLGRAVFWDIKNRLPRSITTIDWDSSFVSVYSKDNPNLLFAMCGFE 237
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BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot
Match: A0A7S3Y066_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y066_HETAK)

HSP 1 Score: 239 bits (609), Expect = 1.180e-70
Identity = 106/123 (86.18%), Postives = 120/123 (97.56%), Query Frame = 1 
Query:    1 YLSFRDTPTEMRHPIRLYTRYVDKIFMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFE 369
            YL+F+DT TE RHP+RLYTRYVDK+++LFRF+AE+AR+LIQRYLTEHPDPNNENVVGYNN+KCWPRD RMRLMKHDVNLGRATFWD+KNRLPRSVTTVEWD+SFVSVYS+DNPNLL+NMSGFE
Sbjct:  666 YLTFQDTATETRHPVRLYTRYVDKVYVLFRFEAEDARELIQRYLTEHPDPNNENVVGYNNKKCWPRDCRMRLMKHDVNLGRATFWDVKNRLPRSVTTVEWDNSFVSVYSKDNPNLLFNMSGFE 788
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BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot
Match: UPI0007DA50AA (pre-mRNA-processing-splicing factor 8 n=1 Tax=Cricetulus griseus TaxID=10029 RepID=UPI0007DA50AA)

HSP 1 Score: 221 bits (562), Expect = 1.430e-70
Identity = 98/123 (79.67%), Postives = 112/123 (91.06%), Query Frame = 1 
Query:    1 YLSFRDTPTEMRHPIRLYTRYVDKIFMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFE 369
            +LSF+D  TE  HPIRL+ RY+D+I + FRF A+EARDLIQRYLTEHPDPNNEN+VGYNN+KCWPRD RMRLMKHDVNLGRA FWDIKNRLPRSVTTV+W++SFVSVYS+DNPNLL+NM GFE
Sbjct:   50 FLSFQDIATEAAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFE 172
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BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot
Match: UPI00064A36EB (pre-mRNA-splicing factor 8 homolog n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI00064A36EB)

HSP 1 Score: 225 bits (574), Expect = 3.130e-70
Identity = 98/123 (79.67%), Postives = 114/123 (92.68%), Query Frame = 1 
Query:    1 YLSFRDTPTEMRHPIRLYTRYVDKIFMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFE 369
            +L+++D  TE  HPIRLY RY+D+++M FRFDAEEARDLIQRYLTEHPDPNNEN+VGYNN+KCWPRD RMRLMKHDVNLGRA FWDIKNRLPRSVTT+EW+ SFVSVYS+DNPNLL++M+GFE
Sbjct:  213 FLTYQDVSTETGHPIRLYCRYIDRVWMFFRFDAEEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDSRMRLMKHDVNLGRAVFWDIKNRLPRSVTTIEWESSFVSVYSKDNPNLLFDMAGFE 335
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BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot
Match: A0A7S3MFK4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MFK4_9STRA)

HSP 1 Score: 236 bits (602), Expect = 3.580e-70
Identity = 103/124 (83.06%), Postives = 120/124 (96.77%), Query Frame = 1 
Query:    1 YLSFRDTPTEMRHPIRLYTRYVDKIFMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNNRKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSRDNPNLLYNMSGFEV 372
            YL+F+D PTE+RHPIRLYTRY+D+I+ML RFDAE+A+D+IQRYLTEHPDPNNENVVGYNN+KCWPRD RMRLMKHDVNLGRA FWDIKNRLPRS+TT+EWD+SFVSVYS+DNPNLL++MSGFE+
Sbjct:  216 YLAFKDVPTEVRHPIRLYTRYIDRIYMLLRFDAEDAKDIIQRYLTEHPDPNNENVVGYNNKKCWPRDCRMRLMKHDVNLGRAVFWDIKNRLPRSMTTLEWDNSFVSVYSKDNPNLLFDMSGFEI 339
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig90137.16500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K085_9PHAE1.550e-7999.19MPN domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A2H1CAG4_FASHE1.890e-7280.49RRM_4 domain-containing protein n=1 Tax=Fasciola h... [more]
A0A7S2STJ4_9STRA8.800e-7286.29Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
G3IPR4_CRIGR1.780e-7179.67Pre-mRNA-processing-splicing factor 8 n=1 Tax=Cric... [more]
A0A836C932_9STRA2.520e-7187.10NUC071 domain-containing protein n=1 Tax=Tribonema... [more]
A0A183BDH7_9TREM1.100e-7080.49Uncharacterized protein n=1 Tax=Echinostoma capron... [more]
A0A7S3Y066_HETAK1.180e-7086.18Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI0007DA50AA1.430e-7079.67pre-mRNA-processing-splicing factor 8 n=1 Tax=Cric... [more]
UPI00064A36EB3.130e-7079.67pre-mRNA-splicing factor 8 homolog n=1 Tax=Sorex a... [more]
A0A7S3MFK4_9STRA3.580e-7083.06Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig90137contigH-elongata_contig90137:1172..1992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.7
Seed ortholog evalue1e-62
Seed eggNOG ortholog2880.D8LLJ8
KEGG koko:K12856
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000386,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0017069,GO:0017070,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030619,GO:0030620,GO:0030623,GO:0032991,GO:0034622,GO:0034641,GO:0036002,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097157,GO:0097159,GO:0097525,GO:0120114,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.U5 snRNA binding
EggNOG OGsCOG5178@1,KOG1795@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size372
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig90137.16500.1prot_H-elongata_contig90137.16500.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig90137 1172..1962 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931301.5056772-CDS-H-elongata_contig90137:1171..13211622931301.5056772-CDS-H-elongata_contig90137:1171..1321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90137 1172..1321 -
1691679780.1261673-CDS-H-elongata_contig90137:1171..13211691679780.1261673-CDS-H-elongata_contig90137:1171..1321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90137 1172..1321 -
1622931301.5206583-CDS-H-elongata_contig90137:1770..19621622931301.5206583-CDS-H-elongata_contig90137:1770..1962Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90137 1771..1962 -
1691679780.1376479-CDS-H-elongata_contig90137:1770..19621691679780.1376479-CDS-H-elongata_contig90137:1770..1962Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90137 1771..1962 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931301.5381086-UTR-H-elongata_contig90137:1962..19921622931301.5381086-UTR-H-elongata_contig90137:1962..1992Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig90137 1963..1992 -
1691679780.146517-UTR-H-elongata_contig90137:1962..19921691679780.146517-UTR-H-elongata_contig90137:1962..1992Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig90137 1963..1992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig90137.16500.1

>prot_H-elongata_contig90137.16500.1 ID=prot_H-elongata_contig90137.16500.1|Name=mRNA_H-elongata_contig90137.16500.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MRHPIRLYTRYVDKIFMLFRFDAEEARDLIQRYLTEHPDPNNENVVGYNN
RKCWPRDQRMRLMKHDVNLGRATFWDIKNRLPRSVTTVEWDDSFVSVYSR
DNPNLLYNMSGFEV
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mRNA from alignment at H-elongata_contig90137:1172..1992-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig90137.16500.1 ID=mRNA_H-elongata_contig90137.16500.1|Name=mRNA_H-elongata_contig90137.16500.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=821bp|location=Sequence derived from alignment at H-elongata_contig90137:1172..1992- (Himanthalia elongata Himel1 dioecious)
TACTTGTCGTTCCGTGACACACCGACCGAGATGCGTCACCCTATCCGCCT
CTACACCCGCTACGTGGACAAGATTTTCATGCTCTTTCGCTTCGACGCCG
AGGAAGCCAGGGACCTGATCCAGAGGTACCTGACAGAGCACCCCGACCCG
AACAACGAGAACGTGGTGGGCTACAACAACCGCAAGTGCTGGCCCAGGGA
TCAGAGGATGCGGCTCATGAAGGTATCTTGAAGCGCCGGCGGTGACGTTT
TAAGTTCTGTACCCTCTAATAGATTCAATGACTATGACGTAGTTATGTGG
GAAGAGGTTGAATGTCTCGTAAAGTTCAAAATTATATATTTTGTTTTTAA
GTTTGTTGCGTAAACTTGCTGCTGTGTAGGTATTTTTTTTAAACGATAAA
TTGTTGTTGCTTTGATAACCACACGTGAGTCGAATATTATTTCGGTACAG
TTTAATAGAAACCTGGTGGGCAGCTTGCTGTACACTAGTTTTATATATTT
AGAGGTTGGGGATTTCGTAGAGAATGCATGTTATGCAGAGCCTGTTGTGT
GTATTTATACTATATAAATACATAAGCTGCGAAGAGGATGTTCACCTTTT
GGACTGTTTCCGATATACGCCGTCTGAAAGCAATACGCCGTGTGCCGCGT
TGCGTGGCGACAACGATGCAGCATGATGTCAACCTGGGGAGGGCCACGTT
CTGGGACATCAAGAACCGCCTTCCTCGATCGGTGACCACGGTTGAGTGGG
ATGACTCCTTCGTTAGCGTTTACTCGAGGGACAACCCCAACCTACTCTAC
AACATGAGCGGATTCGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig90137:1172..1992-

>mRNA_H-elongata_contig90137.16500.1 ID=mRNA_H-elongata_contig90137.16500.1|Name=mRNA_H-elongata_contig90137.16500.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig90137:1172..1992- (Himanthalia elongata Himel1 dioecious)
ATGCGTCACCCTATCCGCCTCTACACCCGCTACGTGGACAAGATTTTCAT
GCTCTTTCGCTTCGACGCCGAGGAAGCCAGGGACCTGATCCAGAGGTACC
TGACAGAGCACCCCGACCCGAACAACGAGAACGTGGTGGGCTACAACAAC
CGCAAGTGCTGGCCCAGGGATCAGAGGATGCGGCTCATGAAGATGCGTCA
CCCTATCCGCCTCTACACCCGCTACGTGGACAAGATTTTCATGCTCTTTC
GCTTCGACGCCGAGGAAGCCAGGGACCTGATCCAGAGGTACCTGACAGAG
CACCCCGACCCGAACAACGAGAACGTGGTGGGCTACAACAACCGCAAGTG
CTGGCCCAGGGATCAGAGGATGCGGCTCATGAAGCATGATGTCAACCTGG
GGAGGGCCACGTTCTGGGACATCAAGAACCGCCTTCCTCGATCGGTGACC
ACGGTTGAGTGGGATGACTCCTTCGTTAGCGTTTACTCGAGGGACAACCC
CAACCTACTCTACAACATGAGCGGATTCGAGGTGCATGATGTCAACCTGG
GGAGGGCCACGTTCTGGGACATCAAGAACCGCCTTCCTCGATCGGTGACC
ACGGTTGAGTGGGATGACTCCTTCGTTAGCGTTTACTCGAGGGACAACCC
CAACCTACTCTACAACATGAGCGGATTCGAGGTG
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