mRNA_H-elongata_contig90116.16498.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig90116.16498.1
Unique NamemRNA_H-elongata_contig90116.16498.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot
Match: D7G118_ECTSI (Rab1A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G118_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 4.420e-45
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:    1 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIG 225
            RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT QESFDHVNDWLSEVNRYASEGTSKLLIG
Sbjct:   47 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQESFDHVNDWLSEVNRYASEGTSKLLIG 121
[Close]
BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot
Match: A0A835Z965_9STRA (Rab1A, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z965_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.420e-44
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:    1 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIG 225
            RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESF HVNDWLSEVNRYASEGTSKLLIG
Sbjct:   47 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIG 121
[Close]
BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot
Match: A0A812SN87_SYMMI (YPT1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SN87_SYMMI)

HSP 1 Score: 148 bits (373), Expect = 2.060e-44
Identity = 70/75 (93.33%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:    1 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIG 225
            RFRTVK++KKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT+QESFDHVNDWLSEVNRYASEGT KLL+G
Sbjct:   47 RFRTVKVEKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNQESFDHVNDWLSEVNRYASEGTCKLLVG 121
[Close]
BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot
Match: A0A418DSF7_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DSF7_9STRA)

HSP 1 Score: 150 bits (378), Expect = 2.320e-44
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:    1 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIG 225
            RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWL+EVNRYASEGT KLL+G
Sbjct:   44 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVG 118
[Close]
BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot
Match: A0A1V9ZQI8_9STRA (Rab1 family GTPase n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZQI8_9STRA)

HSP 1 Score: 150 bits (378), Expect = 2.610e-44
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:    1 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIG 225
            RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWL+EVNRYASEGT KLL+G
Sbjct:   46 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVG 120
[Close]
BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot
Match: A0A485KKH7_9STRA (Aste57867_8519 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKH7_9STRA)

HSP 1 Score: 150 bits (378), Expect = 3.290e-44
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:    1 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIG 225
            RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWL+EVNRYASEGT KLL+G
Sbjct:   45 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVG 119
[Close]
BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot
Match: A0A5D6XVZ2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVZ2_9STRA)

HSP 1 Score: 149 bits (377), Expect = 9.460e-44
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:    1 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIG 225
            RFRTVKIDKKT+KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWL+EVNRYASEGT KLL+G
Sbjct:   48 RFRTVKIDKKTIKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVG 122
[Close]
BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot
Match: A0A7S3VAP6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VAP6_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.290e-43
Identity = 71/75 (94.67%), Postives = 73/75 (97.33%), Query Frame = 1 
Query:    1 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIG 225
            RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQ+SFDHVNDWL EVNRYASEGT KLL+G
Sbjct:   52 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQDSFDHVNDWLKEVNRYASEGTCKLLVG 126
[Close]
BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot
Match: H3GC27_PHYRM (Uncharacterized protein n=26 Tax=Oomycota TaxID=4762 RepID=H3GC27_PHYRM)

HSP 1 Score: 148 bits (373), Expect = 2.430e-43
Identity = 71/75 (94.67%), Postives = 73/75 (97.33%), Query Frame = 1 
Query:    1 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIG 225
            RFRTVKID KTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWL+EVNRYASEGT KLL+G
Sbjct:   63 RFRTVKIDNKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVG 137
[Close]
BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot
Match: F0W1W0_9STRA (Rab1 family GTPase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W1W0_9STRA)

HSP 1 Score: 147 bits (371), Expect = 2.920e-43
Identity = 69/75 (92.00%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:    1 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIG 225
            RFRTV+IDKKT+KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT+QESFDHVNDWL+EVNRYASEGT KLL+G
Sbjct:   46 RFRTVRIDKKTIKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNQESFDHVNDWLNEVNRYASEGTCKLLVG 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G118_ECTSI4.420e-4598.67Rab1A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A0A835Z965_9STRA1.420e-4498.67Rab1A, rab family GTPase n=1 Tax=Tribonema minus T... [more]
A0A812SN87_SYMMI2.060e-4493.33YPT1 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A418DSF7_9STRA2.320e-4496.00Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A1V9ZQI8_9STRA2.610e-4496.00Rab1 family GTPase n=7 Tax=Saprolegniaceae TaxID=4... [more]
A0A485KKH7_9STRA3.290e-4496.00Aste57867_8519 protein n=1 Tax=Aphanomyces stellat... [more]
A0A5D6XVZ2_9STRA9.460e-4494.67Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S3VAP6_9STRA1.290e-4394.67Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
H3GC27_PHYRM2.430e-4394.67Uncharacterized protein n=26 Tax=Oomycota TaxID=47... [more]
F0W1W0_9STRA2.920e-4392.00Rab1 family GTPase putative n=1 Tax=Albugo laibach... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig90116contigH-elongata_contig90116:128..2513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.1
Seed ortholog evalue1e-34
Seed eggNOG ortholog2880.D7G118
KEGG koko:K07874
KEGG Pathwayko05134,map05134
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0084@1,KOG0084@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRab1A, RAB family GTPase
Ec32 orthologEc-19_002140.1
Exons3
Model size225
Cds size225
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig90116.16498.1prot_H-elongata_contig90116.16498.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig90116 128..2513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931301.1499963-CDS-H-elongata_contig90116:127..1751622931301.1499963-CDS-H-elongata_contig90116:127..175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90116 128..175 +
1691679779.9826515-CDS-H-elongata_contig90116:127..1751691679779.9826515-CDS-H-elongata_contig90116:127..175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90116 128..175 +
1622931301.1620939-CDS-H-elongata_contig90116:948..10441622931301.1620939-CDS-H-elongata_contig90116:948..1044Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90116 949..1044 +
1691679779.9985244-CDS-H-elongata_contig90116:948..10441691679779.9985244-CDS-H-elongata_contig90116:948..1044Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90116 949..1044 +
1622931301.189516-CDS-H-elongata_contig90116:2432..25131622931301.189516-CDS-H-elongata_contig90116:2432..2513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90116 2433..2513 +
1691679780.0099897-CDS-H-elongata_contig90116:2432..25131691679780.0099897-CDS-H-elongata_contig90116:2432..2513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90116 2433..2513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig90116.16498.1

>prot_H-elongata_contig90116.16498.1 ID=prot_H-elongata_contig90116.16498.1|Name=mRNA_H-elongata_contig90116.16498.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQES
FDHVNDWLSEVNRYASEGTSKLLIG
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mRNA from alignment at H-elongata_contig90116:128..2513+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig90116.16498.1 ID=mRNA_H-elongata_contig90116.16498.1|Name=mRNA_H-elongata_contig90116.16498.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2386bp|location=Sequence derived from alignment at H-elongata_contig90116:128..2513+ (Himanthalia elongata Himel1 dioecious)
CGATTCCGAACGGTCAAGATCGACAAGAAGACAGTCAAGCTCCAGATTGT
GAGTGTACGGTGCAAAAAAATGGTATACAGGGCGGGTTGTGTAGTAGTGT
AGTGGATGTAAGAAGAGGGAAGAGGGGCTGAGCGTTAAGGTTTCCCTTTT
TTGCGGCTGAAGTTTTCCCAACTGTTTTGCCGTGTGCAGGCGTCTCGAGG
CGGGGTGGATGTTTTGACGTTAGGGTGTCGGTTGGTTGGGAATGTCGATG
CCGCGATGGCGGTTTCATGACGGGGCAAGATGATTGGTTTCGTTTCGTCA
CTAGCTTGCCAACGCTCTCGTCATTTTTGTTTCGTCAAGAGGTGTTTCGT
GGCTGATGAATGATGAATGGTATGTGGAAGTGCCAAGTGCAAGTGCGAGC
GTTTTGAATGTATTTTACACGGCACACGGCGGCTGTAATTGATGGAGGTT
TCGTCCGAACGCCACTGGTACAGTCTAGAGTCTCGTGAGTGTGTGGGTGT
ACCAGTAGTTGATTTTTGAAGTACAGTGTAAACAATGGACGTGTTAGTTC
GGCTTGAGGACGAGGGAAAAGCTGGCCCTGATCGATGCATCAATGCACGC
CATCGTGTCGTACTCTTCGACAGCACTAATATTCCTAGGCTAATACTGCT
ATTACTACTACTACTGCTATTACTACTACTACTGCTGCTGCTGCTGCTAC
TGGTGGTGGTGGTGGTGCCACTAAAGTGCTCGGTACGGTACGGTACGGTC
GCCATTGTGTCACGTCTGCTTGTTTGTATGTCTCTATCGGCGTGTGGCGT
ATGGTGTGTACGCTATTGCAGTGGGATACGGCGGGGCAGGAGCGTTTCCG
TACGATCACGTCTGCGTACTACCGAGGAGCGGATGGTATCATCATGGTCT
ACGACGTGACGTCACAGGTGAGGGGTTCAGGAGGAGACCGACGAATGCCC
CCAAATGTTGTGTTTTTATTCGACGACGACGACGGGGGTCTTTTACTGTT
GAATCCCCGCTTGCCTAGTTTTTATGTCAGATTCTCGCCGTCCTAAACTA
TTACTTAATATATAATAATAGAGTATATTAGAGGTAAATAATAATAGAGT
ATATTAGAGGTAAATAATAATAGAGTATATTAGACGTAAGCGTTGAGAAC
TAAGTTATGTAGCAGCAGCCTTGTGAGGTTTCTTTTTGGATACAGGAAGC
CGCGTGCACACACTTTGGGTTGGTGTCGGTTGATCCCTCTTGCCGTCGTT
GATCCCTCTTGCCGTCGTTGATCCCTCTTGCCGTCGTTGATCCCTCTTGC
CGTCTTGCCGTCTTCCGGCCGACCAAATATAGTGAAGATGCCCAAAATGT
ATGGTGTAGAAAGGATATGCCAATAAATGGCGTTGAAATATGGTCCTGGT
TTATTAACAGTGATGAGCGGATGATGACGATGATAATGTAGAAAATATTA
TATGACGCAGAAGTGACGTGGGGAAAGGCGTTAAAAAAAACGTTACGTGG
TGGTTGGTGGCTACGGCATAAAAAAAGCGCTGGTATTCGCCTCCCCATCC
ATCCCCCCATGATACTTTTTTTTTTGCTTGCAGTAGTGTTAATTAATAGA
CTATACAGTACTATTTATTAATTCCCTAATACATTCTACCCAAGAGAATA
TTAAATACCGTTCAGTATAGTACAGTATAGTATAGCTCCATATTGCAAAA
TGTCAAAATATGGCTCTTCGTTCAATCGTTCTCGGATAGGATCGCGTTCC
GACAGCCACTCGAAGTTTGTTAGCATCTGTGTGCGTTCTATTCTGTGTGT
TTCTTTTTTTTTTATTTAAAACTTTTTCTTATGAGATGTCTCTTCTTCCG
CATCACTGCTTTTTCCTTTGGTTTTGGAGAGTACAGTACGTTGAACGTTT
TTTCCCTTTCGGATGGTGTTTTTTTCTTCTACCTTGTGACCTCGGGCTGG
ATTTTGATATTAGCTTATGTGAGAATCCAATCAAACAATCTATCAGGATA
ATAACTTGGTGCCATGTCTACGCTTGTTCCTTTGCTCCTTTCAGCATATT
TAAAAATATATCACATATTACAATGGAGAGTCAGGCCGTCAGAGATTTGA
GGTATTGACAGTATCACAGAATTGAAATAGAGCAGTCTGTGCATTTTATT
TTTTTACTGCGTTTATTTTTGCCTTCTGGAGGTTTCTAAAGGTCCATCCC
AAACTTTGCTAACCCCCCCCCCTTCTATCCGATGACTAGCGCGTTTGTGC
ATTATAAATTATTTCTCCCTCCCCTCCCCTCCCCCCTCTATCCGAACCGC
GCCAGGAATCGTTTGACCACGTGAACGATTGGCTAAGCGAGGTGAACCGC
TACGCTAGCGAGGGCACGAGCAAGCTTCTCATAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig90116:128..2513+

>mRNA_H-elongata_contig90116.16498.1 ID=mRNA_H-elongata_contig90116.16498.1|Name=mRNA_H-elongata_contig90116.16498.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig90116:128..2513+ (Himanthalia elongata Himel1 dioecious)
CGATTCCGAACGGTCAAGATCGACAAGAAGACAGTCAAGCTCCAGATTCG
ATTCCGAACGGTCAAGATCGACAAGAAGACAGTCAAGCTCCAGATTTGGG
ATACGGCGGGGCAGGAGCGTTTCCGTACGATCACGTCTGCGTACTACCGA
GGAGCGGATGGTATCATCATGGTCTACGACGTGACGTCACAGTGGGATAC
GGCGGGGCAGGAGCGTTTCCGTACGATCACGTCTGCGTACTACCGAGGAG
CGGATGGTATCATCATGGTCTACGACGTGACGTCACAGGAATCGTTTGAC
CACGTGAACGATTGGCTAAGCGAGGTGAACCGCTACGCTAGCGAGGGCAC
GAGCAAGCTTCTCATAGGTGAATCGTTTGACCACGTGAACGATTGGCTAA
GCGAGGTGAACCGCTACGCTAGCGAGGGCACGAGCAAGCTTCTCATAGGT
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