mRNA_H-elongata_contig90072.16496.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig90072.16496.1 vs. uniprot
Match: D7FMV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV4_ECTSI) HSP 1 Score: 207 bits (528), Expect = 2.220e-63 Identity = 99/163 (60.74%), Postives = 126/163 (77.30%), Query Frame = 1
Query: 1 IKKQTFSPKLRIVFLVGLEGTGHHYMADVLENVCKNAQIPCPKMCTLGKVIYPDLSKPKTAYNYKHARERLREEMQNLALKAEE-LPEGKSSIASFGPCRFD-IGMLSYPNFNGPEKTLQYVDLKIVVEEAERAGIDLRIIYLTRQAKSILISDTMHHNYGST 483
++K+ S ++R+VFLVGLEGTGHHYMADVLE+VCK ++ CPK+C + KV+YP+LS PK+ Y AR+RLREEM+ LA EE L EG+S++ SFG CRF GM+SYPNFNG EK LQYVD ++V EEAERAG+D+R +YL R A IL SD+ HHNYG +
Sbjct: 99 VEKKAVSSRMRVVFLVGLEGTGHHYMADVLEDVCKKDKVRCPKLCVMAKVLYPELSLPKSRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSGHHNYGGS 261
BLAST of mRNA_H-elongata_contig90072.16496.1 vs. uniprot
Match: D7FMV3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMV3_ECTSI) HSP 1 Score: 186 bits (473), Expect = 1.080e-54 Identity = 84/162 (51.85%), Postives = 118/162 (72.84%), Query Frame = 1
Query: 1 IKKQTFSPKLRIVFLVGLEGTGHHYMADVLENVCKNAQIPCPKMCTLGKVIYPDLSKPKTAYNYKHARERLREEMQNLAL-KAEELPEGKSSIASFGPCRFDIGMLSYPNFNGPEKTLQYVDLKIVVEEAERAGIDLRIIYLTRQAKSILISDTMHHNYGST 483
++K+T S +LR++FLVGLEGTGHHY +V ++ C A +PC C + K +YP L+ P T +Y+ AR LR E++NLA AE + EG+++IA F CR GM+S+PNFNG +K LQYVD +++ EEAERAG+D+R +YL R A+SIL+SDT H++YG T
Sbjct: 58 VEKKTVSSQLRVMFLVGLEGTGHHYFLNVFDDACTTAAVPCANACPIAKALYPSLATPSTKQDYERARRELRRELENLAAYPAEFMTEGQAAIAQFVTCRSKSGMMSFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHYGGT 219
BLAST of mRNA_H-elongata_contig90072.16496.1 vs. uniprot
Match: A0A6H5KIA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA1_9PHAE) HSP 1 Score: 170 bits (431), Expect = 3.990e-50 Identity = 82/138 (59.42%), Postives = 105/138 (76.09%), Query Frame = 1
Query: 76 MADVLENVCKNAQIPCPKMCTLGKVIYPDLSKPKTAYNYKHARERLREEMQNLALKAEE-LPEGKSSIASFGPCRFD-IGMLSYPNFNGPEKTLQYVDLKIVVEEAERAGIDLRIIYLTRQAKSILISDTMHHNYGST 483
MADVLE+VCK ++ CPK+C + KV+YP+LS P++ Y AR+RLREEM+ LA EE L EG+S++ SFG CRF GM+SYPNFNG EK LQYVD ++V EEAERAG+D+R +YL R A IL SD++HHNYG +
Sbjct: 1 MADVLEDVCKKDKVRCPKLCVMAKVLYPELSLPESRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSVHHNYGGS 138
BLAST of mRNA_H-elongata_contig90072.16496.1 vs. uniprot
Match: A0A6H5JH94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH94_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 1.200e-17 Identity = 54/158 (34.18%), Postives = 84/158 (53.16%), Query Frame = 1
Query: 1 IKKQTFSPKLRIVFLVGLEGTGHHYMADVLENVCKNAQIPCPKMCTLGKVIYPDLSKPKTAYNYKHARERLREEMQNLALKAEELPEGKSSIASFGPCRFDIGMLSYPNFNGPEKTLQYVDLKIVVEEAERAGIDLRIIYLTRQAKSILISDTMHHNY 474
+ K S R+VF+ GLEGTGHHY+ ++ + + P+ GK IY + K N K ++N+ L E ++++S G F SYP +GP K +QY+DL ++ E AE AGID R++YL R AK ++I++T+H +
Sbjct: 139 LPKTHVSDVFRLVFVAGLEGTGHHYVMWANASLFGD-NMNLPRRYGHGKEIYEYYAPLKMGQNVKQFTMSSHNAVENMR----RLAEWAANLSSPGALEFFSIPCSYPVNSGPLKVMQYMDLGMIAETAEGAGIDFRVLYLRRSAKEVVIANTVHRKF 291
BLAST of mRNA_H-elongata_contig90072.16496.1 vs. uniprot
Match: D7G1E6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E6_ECTSI) HSP 1 Score: 75.5 bits (184), Expect = 1.980e-14 Identity = 36/87 (41.38%), Postives = 57/87 (65.52%), Query Frame = 1
Query: 214 REEMQNLALKAEELPEGKSSIASFGPCRFDIGMLSYPNFNGPEKTLQYVDLKIVVEEAERAGIDLRIIYLTRQAKSILISDTMHHNY 474
R++M++LA +A+ LP G + G +SYP NGP+K QYVDL+++ E AE G+DLR++Y+ R AK +L++DT+H +
Sbjct: 42 RDQMRDLAQRAQTLPTP-------GTVQLITGGISYPCGNGPQKVQQYVDLRLLAEAAEAEGVDLRVLYMKRSAKELLLADTVHRGF 121
BLAST of mRNA_H-elongata_contig90072.16496.1 vs. uniprot
Match: A0A7S0A0K6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A0K6_9DINO) HSP 1 Score: 77.4 bits (189), Expect = 1.030e-13 Identity = 52/181 (28.73%), Postives = 87/181 (48.07%), Query Frame = 1
Query: 1 IKKQTFSPKLRIVFLVGLEGTGHHYMADVLENVCKNAQIPCPKMCTLGKVIYPDLSK------------PKTAYNYKHAR---------ERLREEMQNLALKAEELPEGKSSIASFGPCRFDIGMLSYPNFNGPEKTLQYVDLKIVVEEAERAGIDLRIIYLTRQAKSILISDTMHHNYGS 480
+ K+ + R++F+ GLEG+GHH +L+ K + C LG+ ++ D ++ P+ A +++A R E++ + +AS G C GM+SYPNF G K Q D++++ E AE G+D RI+ L R A ++L S T+H ++GS
Sbjct: 99 LPKRVHGARWRLLFVAGLEGSGHHLWIPLLKRCVKARR--CAADVELGRRLWTDRTRKGLWSFETKLYAPRAAKKWEYAPPGAKWLSGFRRAEGEVRTALRRLSRRNATSPLLASLGGC----GMMSYPNFPGKLKMFQTPDVRLLAELAEDEGVDFRILVLHRPAAAVLRSTTIHRHFGS 273
BLAST of mRNA_H-elongata_contig90072.16496.1 vs. uniprot
Match: A0A813BJ34_SYMMI (Hypothetical protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813BJ34_SYMMI) HSP 1 Score: 76.6 bits (187), Expect = 1.400e-13 Identity = 47/154 (30.52%), Postives = 78/154 (50.65%), Query Frame = 1
Query: 1 IKKQTFSPKLRIVFLVGLEGTGHHYMADVLE--NVCKNAQIPCPKMCTLGKVIYPDLSKPKTAYNYKHARERLREEMQNLALKAEELPEGKSSIASFGPCRFDIGMLSYPNFNGPEKTLQYVDLKIVVEEAERAGIDLRIIYLTRQAKSILISD 456
+ K+ S +R VF GLEGTGHH+ ++L ++ +A + ++ + +H E + E +NL+ +P + G + GM+SYPNF GP++ +Q D+ + + AE AGIDLRI+ LTR S++ S+
Sbjct: 64 VTKKVVSSNVRFVFFAGLEGTGHHFWQELLRRLSISHSADLSQELFNRQHGSLFSSTDERGREDLAEHVVELMSETQKNLS----SVPGCNVVALNVGGTTYPSGMMSYPNFGGPDRLIQNPDMFTLAKLAEAAGIDLRIVLLTRHPASLVRSE 213
BLAST of mRNA_H-elongata_contig90072.16496.1 vs. uniprot
Match: A0A1Q9EVB9_SYMMI (Uncharacterized protein n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EVB9_SYMMI) HSP 1 Score: 76.6 bits (187), Expect = 2.670e-13 Identity = 47/154 (30.52%), Postives = 78/154 (50.65%), Query Frame = 1
Query: 1 IKKQTFSPKLRIVFLVGLEGTGHHYMADVLE--NVCKNAQIPCPKMCTLGKVIYPDLSKPKTAYNYKHARERLREEMQNLALKAEELPEGKSSIASFGPCRFDIGMLSYPNFNGPEKTLQYVDLKIVVEEAERAGIDLRIIYLTRQAKSILISD 456
+ K+ S +R VF GLEGTGHH+ ++L ++ +A + ++ + +H E + E +NL+ +P + G + GM+SYPNF GP++ +Q D+ + + AE AGIDLRI+ LTR S++ S+
Sbjct: 302 VTKKVVSSNVRFVFFAGLEGTGHHFWQELLRRLSISHSADLSQELFNRQHGSLFSSTDERGREDLAEHVVELMSETQKNLS----SVPGCNVVALNVGGTTYPSGMMSYPNFGGPDRLIQNPDMFTLAKLAEAAGIDLRIVLLTRHPASLVRSE 451
BLAST of mRNA_H-elongata_contig90072.16496.1 vs. uniprot
Match: A0A7S3PR25_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PR25_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 9.530e-13 Identity = 56/173 (32.37%), Postives = 82/173 (47.40%), Query Frame = 1
Query: 1 IKKQTFSPKLRIVFLVGLEGTGHHYMADVLENVCKNAQIPCPKMCTLGKVIYPDLSKPKTAYN-------------YKHARERLREEMQNLALKAEELPEGKSSIASFGPCRFDIGML-SYPNFNGPEKTLQYVDLKIVVEEAERAGIDLRIIYLTRQAKSILISDTMHHNYG 477
+KK FS KLR+VF VGLEGTGHH ++ + KN Q+ C L +I +N +K E + M + LKA + + + G + SYP F G EK LQ+ D+ + E AE GID R++ L R+A+ ++ISD H ++
Sbjct: 412 LKKTVFS-KLRLVFFVGLEGTGHHLWQGIVMKLLKNKQLNAE--CKLNDLIMHPAGGCWAPWNNGKGFFCSAASESFKTGYEMAADAM--MKLKASNATGTHMLNLVYRGWKGNCGSIASYPCFGGSEKNLQHPDVLKLAELAESIGIDFRVVLLQRKAEELVISDIWHRHFN 579
BLAST of mRNA_H-elongata_contig90072.16496.1 vs. uniprot
Match: A0A812H6X7_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812H6X7_9DINO) HSP 1 Score: 73.9 bits (180), Expect = 1.230e-12 Identity = 48/155 (30.97%), Postives = 76/155 (49.03%), Query Frame = 1
Query: 1 IKKQTFSPKLRIVFLVGLEGTGHHYMADVLENVCKNAQIPCPKMC---TLGKVIYPDLSKPKTAYNYKHARERLREEMQNLALKAEELPEGKSSIASFGPCRFDIGMLSYPNFNGPEKTLQYVDLKIVVEEAERAGIDLRIIYLTRQAKSILISD 456
+ K+ S K+R VF GLEGTGHH+ ++L + + + G ++ + + +H E + E +NL+ P + G GM+SYPNF G ++ Q D+ + + AE AGIDLRI+ LTRQ S++ S+
Sbjct: 59 VTKKVVSSKIRFVFFAGLEGTGHHFWQEMLRRLSISHSADLSQELFNRRHGPGLFSSSDEQVREASAEHVVELMSEMQKNLS----SAPGCNVVALNVGGITRPSGMMSYPNFGGRDRMFQNPDMFTLAKLAEAAGIDLRIVLLTRQPASLVQSE 209 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig90072.16496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig90072.16496.1 >prot_H-elongata_contig90072.16496.1 ID=prot_H-elongata_contig90072.16496.1|Name=mRNA_H-elongata_contig90072.16496.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp IKKQTFSPKLRIVFLVGLEGTGHHYMADVLENVCKNAQIPCPKMCTLGKVback to top mRNA from alignment at H-elongata_contig90072:451..936- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig90072.16496.1 ID=mRNA_H-elongata_contig90072.16496.1|Name=mRNA_H-elongata_contig90072.16496.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=486bp|location=Sequence derived from alignment at H-elongata_contig90072:451..936- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig90072:451..936- >mRNA_H-elongata_contig90072.16496.1 ID=mRNA_H-elongata_contig90072.16496.1|Name=mRNA_H-elongata_contig90072.16496.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig90072:451..936- (Himanthalia elongata Himel1 dioecious)back to top |