prot_H-elongata_contig90030.16493.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig90030.16493.1
Unique Nameprot_H-elongata_contig90030.16493.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length121
Homology
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BLAST of mRNA_H-elongata_contig90030.16493.1 vs. uniprot
Match: D7FM23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM23_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 5.100e-30
Identity = 65/117 (55.56%), Postives = 76/117 (64.96%), Query Frame = 0 
Query:    1 MSSTMLPSAEWISAAARQAARSGVARSNLQAGQNSSSPDSNN-RGLSTTPATSGSAGDRRDHEHVAGHRGSGGLVKGKAVFCLPPNVEWFQGHFAYAAGGGCTASLGLLGTELPVDP 116
            MSST+LPSAEWISA++R+                   P + +  G+   P ++    D    E   GHRGSGGLV G+AVFCLPP VEWFQGHFAYAA GGCTASLG+LGTELPVDP
Sbjct:    1 MSSTLLPSAEWISASSRRXXXXXXXXXXXXXXXXXXPPGAGHPTGIPPQPGSNDD--DAHREERFVGHRGSGGLVHGRAVFCLPPGVEWFQGHFAYAARGGCTASLGVLGTELPVDP 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig90030.16493.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM23_ECTSI5.100e-3055.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig90030contigH-elongata_contig90030:1894..2301 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig90030.16493.1mRNA_H-elongata_contig90030.16493.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig90030 1894..2301 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig90030.16493.1 ID=prot_H-elongata_contig90030.16493.1|Name=mRNA_H-elongata_contig90030.16493.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MSSTMLPSAEWISAAARQAARSGVARSNLQAGQNSSSPDSNNRGLSTTPA
TSGSAGDRRDHEHVAGHRGSGGLVKGKAVFCLPPNVEWFQGHFAYAAGGG
CTASLGLLGTELPVDPVSMN*
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