mRNA_H-elongata_contig90013.16490.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig90013.16490.1
Unique NamemRNA_H-elongata_contig90013.16490.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig90013.16490.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE)

HSP 1 Score: 125 bits (314), Expect = 1.050e-33
Identity = 64/121 (52.89%), Postives = 80/121 (66.12%), Query Frame = 1
Query:    1 IEALLYGCSTWTLSQEHNAKLRTVHHRVLLRIIGTQRK-RPDHRMTSYNRALEMTRCGSIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLDGVVRRGRGGKEKEWTDCVQSDIRTFGIT 360
            IE LLYGC TWTL+ +H AKLR+ HH VLLR+IG QR+ R DH   SY +AL +TRC SIETT+R RRL +AG ++R   GRLP R+ FG + G      GG+ K W   +  D+R F  T
Sbjct:    7 IETLLYGCVTWTLNADHFAKLRSAHHEVLLRVIGFQRRLRTDHTTLSYAKALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGGGSPKPGGQPKTWPRAIAEDLRVFKAT 127          
BLAST of mRNA_H-elongata_contig90013.16490.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.420e-33
Identity = 59/118 (50.00%), Postives = 81/118 (68.64%), Query Frame = 1
Query:    1 IEALLYGCSTWTLSQEHNAKLRTVHHRVLLRIIGTQRKRPDHRMTSYNRALEMTRCGSIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLDGVVRRGRGGKEKEWTDCVQSDIRTFG 354
            +EALLY C+TW+    H   LR++HHR+LLR+IG +RK+  +R  SY + L+   C S+E T+R RRLL+AG+L R   GRLPKR+ FG L G  +R RGG+E+ W  CV  D++ FG
Sbjct:    1 MEALLYSCTTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 118          
BLAST of mRNA_H-elongata_contig90013.16490.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 4.330e-33
Identity = 60/118 (50.85%), Postives = 79/118 (66.95%), Query Frame = 1
Query:    1 IEALLYGCSTWTLSQEHNAKLRTVHHRVLLRIIGTQRKRPDHRMTSYNRALEMTRCGSIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLDGVVRRGRGGKEKEWTDCVQSDIRTFG 354
            +EALLYGC TW+    H   LR++HHR+LLR+IG +RK+  +R  SY + L    C S+E T+R RRLL+AG L R   GRLPKR+ FG L G  +R RGG+E+ W  CV  D++ FG
Sbjct:  133 MEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 250          
BLAST of mRNA_H-elongata_contig90013.16490.1 vs. uniprot
Match: A0A6H5JLT1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT1_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 5.640e-31
Identity = 60/118 (50.85%), Postives = 78/118 (66.10%), Query Frame = 1
Query:    1 IEALLYGCSTWTLSQEHNAKLRTVHHRVLLRIIGTQRKRPDHRMTSYNRALEMTRCGSIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLDGVVRRGRGGKEKEWTDCVQSDIRTFG 354
            +EALLYGC TW+    H   LR++HHR+L R+IG + K+  +R  SY R LE   C S+E T+R RRLL+AG L R   GRLPKR+ FG L G  +R RGG+E+ W  CV  D++ FG
Sbjct:  396 MEALLYGCMTWSPLSGHYQTLRSIHHRLLFRVIGYKLKKDTYRQLSYPRTLERVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 513          
BLAST of mRNA_H-elongata_contig90013.16490.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 7.450e-31
Identity = 60/118 (50.85%), Postives = 79/118 (66.95%), Query Frame = 1
Query:    1 IEALLYGCSTWTLSQEHNAKLRTVHHRVLLRIIGTQRKRPDHRMTSYNRALEMTRCGSIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLDGVVRRGRGGKEKEWTDCVQSDIRTFG 354
            +EALLYGC TW+    H   LR++HHR+LLR+IG +RK+  +R  SY + L+   C S+E T+R RRLL+AG L R   GRLPKR+ FG L G  +R RGG+E+ W  CV  D+  FG
Sbjct:  485 MEALLYGCMTWSPLSRHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFG 602          
BLAST of mRNA_H-elongata_contig90013.16490.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.240e-30
Identity = 59/118 (50.00%), Postives = 79/118 (66.95%), Query Frame = 1
Query:    1 IEALLYGCSTWTLSQEHNAKLRTVHHRVLLRIIGTQRKRPDHRMTSYNRALEMTRCGSIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLDGVVRRGRGGKEKEWTDCVQSDIRTFG 354
            +EALLYGC TW+    H   LR++HHR+LLR+IG +RK+  +R  SY + L+   C S+E T+R RRLL+AG L R   GRLPKR+  G L G  +R RGG+E+ W  CV  D++ FG
Sbjct:  157 MEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 274          
BLAST of mRNA_H-elongata_contig90013.16490.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 2.670e-30
Identity = 57/117 (48.72%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    1 IEALLYGCSTWTLSQEHNAKLRTVHHRVLLRIIGTQRKRPDHRMTSYNRALEMTRCGSIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLDGVVRRGRGGKEKEWTDCVQSDIRTF 351
            +EALLYGC TW+  + H   L+T HHR+LLR+IG +RKR  +R  SY +AL+   C S+E T+R RRLL+AG + R   GRLPKR+ FG L G    G+G  E+ W  C++ D++ F
Sbjct:  112 VEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMF 228          
BLAST of mRNA_H-elongata_contig90013.16490.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 3.700e-30
Identity = 59/126 (46.83%), Postives = 81/126 (64.29%), Query Frame = 1
Query:    1 IEALLYGCSTWTLSQEHNAKLRTVHHRVLLRIIGTQRKRPDHRMTSYNRALEMTRCGSIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLDGVVRRGRGGKEKEWTDCVQSDIRTFG---ITGDW 369
            +EALLYGC TW+  + H   L+T HHR+LLR+IG +RKR  +R  SY +AL+   C S+E T+R RRLL+AG + R   GRLPKR+ FG L G    G+G  E+ W  C++ D++ F    + G W
Sbjct:  163 VEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARELRGSW 288          
BLAST of mRNA_H-elongata_contig90013.16490.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.390e-29
Identity = 57/117 (48.72%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    1 IEALLYGCSTWTLSQEHNAKLRTVHHRVLLRIIGTQRKRPDHRMTSYNRALEMTRCGSIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLDGVVRRGRGGKEKEWTDCVQSDIRTF 351
            +EALLYGC TW+  + H   L+T HHR+LLR+IG +RKR  +R  SY +AL+   C S+E T+R RRLL+AG + R   GRLPKR+ FG L G    G+G  E+ W  C++ D++ F
Sbjct:  131 VEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMF 247          
BLAST of mRNA_H-elongata_contig90013.16490.1 vs. uniprot
Match: A0A6H5K2V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V4_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 3.630e-29
Identity = 57/118 (48.31%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 IEALLYGCSTWTLSQEHNAKLRTVHHRVLLRIIGTQRKRPDHRMTSYNRALEMTRCGSIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLDGVVRRGRGGKEKEWTDCVQSDIRTFG 354
            +EALLYGC TW+    H   LR++HHR+LLR+IG +RK+  +R  SY +A +   C S+E T+R RRLL A  L R   GRLPKR+  G L G  +R RGG+++ W  CV  D++ FG
Sbjct:  113 MEALLYGCMTWSPLNGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQAPKRVECQSVEATIRQRRLLLARALARQPDGRLPKRLMLGELAGGEKRRRGGQKQNWPKCVLDDLKAFG 230          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig90013.16490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001AA1A1FE1.050e-3352.89hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
A0A6H5JYE2_9PHAE1.420e-3350.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JAH7_9PHAE4.330e-3350.85Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLT1_9PHAE5.640e-3150.85Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KS82_9PHAE7.450e-3150.85Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K1X4_9PHAE1.240e-3050.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLH5_9PHAE2.670e-3048.72Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLX9_9PHAE3.700e-3046.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWS4_9PHAE1.390e-2948.72Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K2V4_9PHAE3.630e-2948.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig90013contigH-elongata_contig90013:2213..2629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog7897.ENSLACP00000000641
EggNOG free text desc.Ribonuclease H protein
EggNOG OGsKOG1075@1,KOG1075@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931300.4293306-CDS-H-elongata_contig90013:2212..26291622931300.4293306-CDS-H-elongata_contig90013:2212..2629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90013 2213..2629 +
1691679779.687278-CDS-H-elongata_contig90013:2212..26291691679779.687278-CDS-H-elongata_contig90013:2212..2629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90013 2213..2629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig90013.16490.1prot_H-elongata_contig90013.16490.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig90013 2213..2629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig90013.16490.1

>prot_H-elongata_contig90013.16490.1 ID=prot_H-elongata_contig90013.16490.1|Name=mRNA_H-elongata_contig90013.16490.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
IEALLYGCSTWTLSQEHNAKLRTVHHRVLLRIIGTQRKRPDHRMTSYNRA
LEMTRCGSIETTLRTRRLLWAGTLIRMSGGRLPKRIAFGNLDGVVRRGRG
GKEKEWTDCVQSDIRTFGITGDWKAITLKAEIWGDIVAE
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mRNA from alignment at H-elongata_contig90013:2213..2629+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig90013.16490.1 ID=mRNA_H-elongata_contig90013.16490.1|Name=mRNA_H-elongata_contig90013.16490.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at H-elongata_contig90013:2213..2629+ (Himanthalia elongata Himel1 dioecious)
ATCGAGGCCCTCCTGTATGGATGCAGTACGTGGACCCTTTCCCAGGAACA CAACGCCAAACTCCGCACCGTACACCACCGGGTCTTGCTCCGCATCATCG GGACACAGCGCAAGAGACCAGACCACCGGATGACCTCGTACAACCGTGCC CTTGAGATGACCCGGTGCGGAAGCATTGAGACAACGTTGCGCACGAGAAG ACTTTTGTGGGCGGGAACGCTCATCCGAATGAGCGGCGGGCGGTTGCCAA AGCGAATCGCCTTCGGAAACCTTGACGGTGTAGTACGGAGAGGACGGGGT GGGAAGGAGAAAGAGTGGACTGACTGTGTCCAGAGTGATATCCGGACGTT TGGCATTACGGGGGACTGGAAAGCAATTACGTTGAAGGCTGAGATTTGGG GTGATATAGTCGCGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig90013:2213..2629+

>mRNA_H-elongata_contig90013.16490.1 ID=mRNA_H-elongata_contig90013.16490.1|Name=mRNA_H-elongata_contig90013.16490.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig90013:2213..2629+ (Himanthalia elongata Himel1 dioecious)
ATCGAGGCCCTCCTGTATGGATGCAGTACGTGGACCCTTTCCCAGGAACA
CAACGCCAAACTCCGCACCGTACACCACCGGGTCTTGCTCCGCATCATCG
GGACACAGCGCAAGAGACCAGACCACCGGATGACCTCGTACAACCGTGCC
CTTGAGATGACCCGGTGCGGAAGCATTGAGACAACGTTGCGCACGAGAAG
ACTTTTGTGGGCGGGAACGCTCATCCGAATGAGCGGCGGGCGGTTGCCAA
AGCGAATCGCCTTCGGAAACCTTGACGGTGTAGTACGGAGAGGACGGGGT
GGGAAGGAGAAAGAGTGGACTGACTGTGTCCAGAGTGATATCCGGACGTT
TGGCATTACGGGGGACTGGAAAGCAATTACGTTGAAGGCTGAGATTTGGG
GTGATATAGTCGCGGAGATCGAGGCCCTCCTGTATGGATGCAGTACGTGG
ACCCTTTCCCAGGAACACAACGCCAAACTCCGCACCGTACACCACCGGGT
CTTGCTCCGCATCATCGGGACACAGCGCAAGAGACCAGACCACCGGATGA
CCTCGTACAACCGTGCCCTTGAGATGACCCGGTGCGGAAGCATTGAGACA
ACGTTGCGCACGAGAAGACTTTTGTGGGCGGGAACGCTCATCCGAATGAG
CGGCGGGCGGTTGCCAAAGCGAATCGCCTTCGGAAACCTTGACGGTGTAG
TACGGAGAGGACGGGGTGGGAAGGAGAAAGAGTGGACTGACTGTGTCCAG
AGTGATATCCGGACGTTTGGCATTACGGGGGACTGGAAAGCAATTACGTT
GAAGGCTGAGATTTGGGGTGATATAGTCGCGGAG
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