mRNA_H-elongata_contig89999.16488.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89999.16488.1
Unique NamemRNA_H-elongata_contig89999.16488.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig89999.16488.1 vs. uniprot
Match: D7FTN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN6_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 2.090e-27
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:   22 RQVTFYGPRSEFVASGSDCGHIFIWDKKTAKLEMLLFGDKSGAVNCLEPHPFLPALAT 195
            +QVTFYGPRSEFV SGSDCGHIF W+K +AKLEMLLFGDK GAVNCLEPHP+LPALAT
Sbjct:  508 KQVTFYGPRSEFVVSGSDCGHIFFWNKSSAKLEMLLFGDKVGAVNCLEPHPYLPALAT 565
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BLAST of mRNA_H-elongata_contig89999.16488.1 vs. uniprot
Match: A0A6H5KJD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD8_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.860e-27
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:   22 RQVTFYGPRSEFVASGSDCGHIFIWDKKTAKLEMLLFGDKSGAVNCLEPHPFLPALAT 195
            +QVTFYGPRSEFV SGSDCGHIF W+K +AKLEMLLFGDK GAVNCLEPHP+LPALAT
Sbjct:  553 KQVTFYGPRSEFVVSGSDCGHIFFWNKASAKLEMLLFGDKVGAVNCLEPHPYLPALAT 610
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BLAST of mRNA_H-elongata_contig89999.16488.1 vs. uniprot
Match: A0A0A6YWY2_MOUSE (DDB1- and CUL4-associated factor 8 (Fragment) n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0A0A6YWY2_MOUSE)

HSP 1 Score: 94.7 bits (234), Expect = 6.620e-23
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:    1 HPSPRFCRQVTFYGPRSEFVASGSDCGHIFIWDKKTAKLEMLLFGDKSGAVNCLEPHPFLPALATRSVG-DARVVVPRREAMQSGTG 258
            H +    + V FYGP+SEFV SGSDCGHIF+W+K + ++   + GDK G VNCLEPHP LP LAT  +  D ++  P  EA    TG
Sbjct:   22 HRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAEASTELTG 108
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BLAST of mRNA_H-elongata_contig89999.16488.1 vs. uniprot
Match: A0A6S7JB47_PARCT (DDB1- and CUL4-associated factor 8 n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JB47_PARCT)

HSP 1 Score: 92.8 bits (229), Expect = 3.770e-22
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:   28 VTFYGPRSEFVASGSDCGHIFIWDKKTAKLEMLLFGDKSGAVNCLEPHPFLPALATRSVG-DARVVVP 228
            V FYGPRSEFV SGSDCGH+F+WDK+T  +  LL GD +G VNCLEPHP+ P LAT  +  D ++  P
Sbjct:    6 VNFYGPRSEFVVSGSDCGHVFLWDKETESIVQLLEGDVTGVVNCLEPHPYHPFLATSGLDHDVKIWTP 73
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BLAST of mRNA_H-elongata_contig89999.16488.1 vs. uniprot
Match: A0A7J8CRV2_MOLMO (Uncharacterized protein n=1 Tax=Molossus molossus TaxID=27622 RepID=A0A7J8CRV2_MOLMO)

HSP 1 Score: 94.7 bits (234), Expect = 7.480e-22
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:    1 HPSPRFCRQVTFYGPRSEFVASGSDCGHIFIWDKKTAKLEMLLFGDKSGAVNCLEPHPFLPALATRSVG-DARVVVPRREAMQSGTG 258
            H +    + V FYGP+SEFV SGSDCGHIF+W+K + ++   + GDK G VNCLEPHP LP LAT  +  D ++  P  EA    TG
Sbjct:   96 HRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAEASTELTG 182
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BLAST of mRNA_H-elongata_contig89999.16488.1 vs. uniprot
Match: A0A8C0SB23_CANLF (Uncharacterized protein n=6 Tax=Canidae TaxID=9608 RepID=A0A8C0SB23_CANLF)

HSP 1 Score: 96.3 bits (238), Expect = 2.410e-21
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 HPSPRFCRQVTFYGPRSEFVASGSDCGHIFIWDKKTAKLEMLLFGDKSGAVNCLEPHPFLPALATRSVG-DARVVVPRREAMQSGTG 258
            H +    + V FYGPRSEFV SGSDCGHIF+W+K + ++   + GDK G +NCLEPHP+LP +AT  +  +A++  P  EA    TG
Sbjct:  425 HRNNATIKGVNFYGPRSEFVVSGSDCGHIFLWEKSSCQIVQFMEGDKGGTINCLEPHPYLPVMATSGLDHNAKIWAPTAEATTELTG 511
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BLAST of mRNA_H-elongata_contig89999.16488.1 vs. uniprot
Match: A0A2U3Z4L8_LEPWE (DDB1- and CUL4-associated factor 8-like n=2 Tax=Laurasiatheria TaxID=314145 RepID=A0A2U3Z4L8_LEPWE)

HSP 1 Score: 93.2 bits (230), Expect = 3.180e-21
Identity = 43/87 (49.43%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:    1 HPSPRFCRQVTFYGPRSEFVASGSDCGHIFIWDKKTAKLEMLLFGDKSGAVNCLEPHPFLPALATRSVG-DARVVVPRREAMQSGTG 258
            H +    + V FYGP+SEFV SGSDCGHIF+W+K + ++   + GDK G VNCLEPHP LP LAT  +  D ++  P  E     TG
Sbjct:  101 HRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKASCQIVQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTG 187
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BLAST of mRNA_H-elongata_contig89999.16488.1 vs. uniprot
Match: A0A5N4C2V8_CAMDR (DDB1-and CUL4-associated factor 8 n=2 Tax=Camelus TaxID=9836 RepID=A0A5N4C2V8_CAMDR)

HSP 1 Score: 95.9 bits (237), Expect = 3.270e-21
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 HPSPRFCRQVTFYGPRSEFVASGSDCGHIFIWDKKTAKLEMLLFGDKSGAVNCLEPHPFLPALATRSVG-DARVVVPRREAMQSGTG 258
            H +    + V FYGPRSEFV SGSDCGHIF+W+K + ++   + GDK G +NCLEPHP+LP +AT  +  DA++  P  +A    TG
Sbjct:  416 HRNNATVKGVNFYGPRSEFVVSGSDCGHIFLWEKSSCQIVQFMEGDKGGTINCLEPHPYLPVMATSGLDHDAKIWAPIAKATNRLTG 502
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BLAST of mRNA_H-elongata_contig89999.16488.1 vs. uniprot
Match: A0A7J8CRU4_MOLMO (Uncharacterized protein n=1 Tax=Molossus molossus TaxID=27622 RepID=A0A7J8CRU4_MOLMO)

HSP 1 Score: 94.7 bits (234), Expect = 3.270e-21
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:    1 HPSPRFCRQVTFYGPRSEFVASGSDCGHIFIWDKKTAKLEMLLFGDKSGAVNCLEPHPFLPALATRSVG-DARVVVPRREAMQSGTG 258
            H +    + V FYGP+SEFV SGSDCGHIF+W+K + ++   + GDK G VNCLEPHP LP LAT  +  D ++  P  EA    TG
Sbjct:  201 HRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAEASTELTG 287
[Close]
BLAST of mRNA_H-elongata_contig89999.16488.1 vs. uniprot
Match: UPI000854E315 (DDB1- and CUL4-associated factor 8-like n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854E315)

HSP 1 Score: 92.8 bits (229), Expect = 3.420e-21
Identity = 42/77 (54.55%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:    1 HPSPRFCRQVTFYGPRSEFVASGSDCGHIFIWDKKTAKLEMLLFGDKSGAVNCLEPHPFLPALATRSVG-DARVVVP 228
            H +    + V FYGP SEFV SGSDCGHIF+WDK + ++   + GDK G VNCLEPHP LP LAT  +  D +V +P
Sbjct:   87 HRNNATVKGVNFYGPTSEFVVSGSDCGHIFLWDKSSCQIVQFMDGDKGGVVNCLEPHPHLPVLATSGLDYDVKVWLP 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89999.16488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTN6_ECTSI2.090e-2786.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJD8_9PHAE2.860e-2786.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0A6YWY2_MOUSE6.620e-2350.57DDB1- and CUL4-associated factor 8 (Fragment) n=2 ... [more]
A0A6S7JB47_PARCT3.770e-2260.29DDB1- and CUL4-associated factor 8 n=3 Tax=Paramur... [more]
A0A7J8CRV2_MOLMO7.480e-2250.57Uncharacterized protein n=1 Tax=Molossus molossus ... [more]
A0A8C0SB23_CANLF2.410e-2149.43Uncharacterized protein n=6 Tax=Canidae TaxID=9608... [more]
A0A2U3Z4L8_LEPWE3.180e-2149.43DDB1- and CUL4-associated factor 8-like n=2 Tax=La... [more]
A0A5N4C2V8_CAMDR3.270e-2149.43DDB1-and CUL4-associated factor 8 n=2 Tax=Camelus ... [more]
A0A7J8CRU4_MOLMO3.270e-2150.57Uncharacterized protein n=1 Tax=Molossus molossus ... [more]
UPI000854E3153.420e-2154.55DDB1- and CUL4-associated factor 8-like n=1 Tax=Na... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89999contigH-elongata_contig89999:1458..2427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue2.7e-23
Seed eggNOG ortholog2880.D7FTN6
Preferred nameDCAF8
KEGG koko:K11795,ko:K11804,ko:K22204
KEGG TC1.A.46.1
GOsGO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0031461,GO:0031974,GO:0031981,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0080008,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.protein modification by small protein conjugation or removal
EggNOG OGsKOG1334@1,KOG1334@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931299.6193788-CDS-H-elongata_contig89999:1457..15591622931299.6193788-CDS-H-elongata_contig89999:1457..1559Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89999 1458..1559 +
1691679779.2740607-CDS-H-elongata_contig89999:1457..15591691679779.2740607-CDS-H-elongata_contig89999:1457..1559Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89999 1458..1559 +
1622931299.6385539-CDS-H-elongata_contig89999:2271..24271622931299.6385539-CDS-H-elongata_contig89999:2271..2427Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89999 2272..2427 +
1691679779.2869413-CDS-H-elongata_contig89999:2271..24271691679779.2869413-CDS-H-elongata_contig89999:2271..2427Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89999 2272..2427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89999.16488.1prot_H-elongata_contig89999.16488.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89999 1458..2427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89999.16488.1

>prot_H-elongata_contig89999.16488.1 ID=prot_H-elongata_contig89999.16488.1|Name=mRNA_H-elongata_contig89999.16488.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
HPSPRFCRQVTFYGPRSEFVASGSDCGHIFIWDKKTAKLEMLLFGDKSGA
VNCLEPHPFLPALATRSVGDARVVVPRREAMQSGTG
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mRNA from alignment at H-elongata_contig89999:1458..2427+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89999.16488.1 ID=mRNA_H-elongata_contig89999.16488.1|Name=mRNA_H-elongata_contig89999.16488.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=970bp|location=Sequence derived from alignment at H-elongata_contig89999:1458..2427+ (Himanthalia elongata Himel1 dioecious)
CACCCTTCGCCTCGCTTTTGCCGACAGGTGACTTTCTACGGCCCGCGTAG
CGAATTCGTGGCTAGCGGCTCCGACTGCGGGCACATCTTCATCTGGGATA
AGGTGACCCCCCCCCAAACCTTTAAGATCTGCATCGGTTTCGCGTCTCCC
TCCTTGCGTAAAACCCTTCCACGGTATTTGCGTACGTAACGCCATTCAAC
TCTATATGAAAACCAAGCCTTGCAAGCAAACCCTCTGTGGAGAAGGTTGT
AGATATCCCTTCGTAGAAAACTTTCCTGGCATATCTCTGTGAACCTTGCA
CACATCCCTCCGTGGAAAATCTAACAGACATCCCTATCCCCCCGCCTCTG
CATTAGTACTACGACTGATGTTGTGGGAGTAGATGTTTTGCTTGATGTTA
TCGATCCTTCGTGTCCTGGCTTAACGAAATACTGCGTGCGGTTGGTTCTC
AAAATAGTGCACTTTGATTTGCGCGCACGCACCACATTAGTCTGTAGTTG
AACTTTTATAGTGTATCTCGTAGCTACGGTTATCCGTTGACTCCGCGCAG
CCTTCCCTTCTTCCCTCGTAAAGTATTTTTTCTCCAGCTTACTCTATTAT
ATCAATACATAAAATCATACAGTCGTCGTTAAAAACCATTGGTCATTTTG
AAGTGGAAATCCCGTGGAGACGGTAGTCACTTTCTCTTAGAATCGGAAAC
CCCGCCCCCTACCGCTAATCTGGAACAGTGTCGAGAGGTTATTGTTTGCG
CTTTATTTTGACCGCTGCTTTTTTCTTACCTACGCGACGGGACGGGACGT
GTGTCGTCGATCAGAAAACAGCAAAGCTGGAGATGCTGCTCTTCGGGGAT
AAATCCGGCGCCGTCAATTGTCTGGAACCACACCCCTTCCTGCCTGCCCT
CGCGACGAGGTCCGTAGGCGATGCGAGAGTAGTCGTTCCTCGAAGAGAAG
CAATGCAATCTGGGACAGGA
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Coding sequence (CDS) from alignment at H-elongata_contig89999:1458..2427+

>mRNA_H-elongata_contig89999.16488.1 ID=mRNA_H-elongata_contig89999.16488.1|Name=mRNA_H-elongata_contig89999.16488.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig89999:1458..2427+ (Himanthalia elongata Himel1 dioecious)
CACCCTTCGCCTCGCTTTTGCCGACAGGTGACTTTCTACGGCCCGCGTAG
CGAATTCGTGGCTAGCGGCTCCGACTGCGGGCACATCTTCATCTGGGATA
AGCACCCTTCGCCTCGCTTTTGCCGACAGGTGACTTTCTACGGCCCGCGT
AGCGAATTCGTGGCTAGCGGCTCCGACTGCGGGCACATCTTCATCTGGGA
TAAGAAAACAGCAAAGCTGGAGATGCTGCTCTTCGGGGATAAATCCGGCG
CCGTCAATTGTCTGGAACCACACCCCTTCCTGCCTGCCCTCGCGACGAGG
TCCGTAGGCGATGCGAGAGTAGTCGTTCCTCGAAGAGAAGCAATGCAATC
TGGGACAGGAAAAACAGCAAAGCTGGAGATGCTGCTCTTCGGGGATAAAT
CCGGCGCCGTCAATTGTCTGGAACCACACCCCTTCCTGCCTGCCCTCGCG
ACGAGGTCCGTAGGCGATGCGAGAGTAGTCGTTCCTCGAAGAGAAGCAAT
GCAATCTGGGACAGGA
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