mRNA_H-elongata_contig89952.16484.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig89952.16484.1 vs. uniprot
Match: A0A6H5KY82_9PHAE (RECA_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY82_9PHAE) HSP 1 Score: 165 bits (418), Expect = 5.660e-46 Identity = 110/250 (44.00%), Postives = 127/250 (50.80%), Query Frame = 1
Query: 1 MEHLPRLMEAHGIRLVVIDSIAALFRSDLVRGRGDIGERSRLLGRLSQQMKRLGDRHRAAFVVVNQARCSGCACCITNSFGAAGATGGSAGQGREAGG----------NVPAIGLLWSHCINTRFMVYRRDYRLPLLMSSSSMPINIDGQQQLPVSSSGGGL----------------------------------------------------LSNAVAREITLEMSPCLPVHIRCAFVIERDGISGVG 564
MEHLP +M + ++LVVIDSIAALFRSDL GRGDIGERSRLLGRLSQQMKRLGDRH AAFVVVNQ +T FG++ GG +VPA+GLLWS CINTRF V RRDYRL L SS + P + L +A+AREITL+MSPC+PVH RC FV+ER G+ GVG
Sbjct: 184 MEHLPHIMRSQNVKLVVIDSIAALFRSDLGCGRGDIGERSRLLGRLSQQMKRLGDRHGAAFVVVNQ---------VTAKFGSSTIGGGXXXXXXXXXXXXXXXXXXXXSVPAMGLLWSQCINTRFKVRRRDYRLSLQPPPSSESGSRQRATPNPRDQNSSSLSLPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAIAREITLDMSPCVPVHARCGFVVERSGVRGVG 424
BLAST of mRNA_H-elongata_contig89952.16484.1 vs. uniprot
Match: D8LGE7_ECTSI (RECA_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE7_ECTSI) HSP 1 Score: 130 bits (328), Expect = 1.580e-33 Identity = 75/121 (61.98%), Postives = 87/121 (71.90%), Query Frame = 1
Query: 1 MEHLPRLMEAHGIRLVVIDSIAALFRSDLVRGRGDIGERSRLLGRLSQQMKRLGDRHRAAFVVVNQARCSGCACCITNSFGAAGATGGSAGQGREA---------GGNVPAIGLLWSHCIN 336
MEHLP +M + ++LVVIDSIAALFRSD+ RGRGDIGERSRLLGRLSQQMKRLGDRH AAFVVVNQ +T FG++ GG G+G+ GG+VPA+GLLWS CIN
Sbjct: 184 MEHLPHIMRSQNVKLVVIDSIAALFRSDMGRGRGDIGERSRLLGRLSQQMKRLGDRHGAAFVVVNQ---------VTARFGSS-TIGGGGGRGQGTMGVVGGSGGGGSVPAMGLLWSQCIN 294
BLAST of mRNA_H-elongata_contig89952.16484.1 vs. uniprot
Match: A0A4D9CSH0_9STRA (RECA_2 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSH0_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 2.070e-18 Identity = 65/176 (36.93%), Postives = 93/176 (52.84%), Query Frame = 1
Query: 37 IRLVVIDSIAALFRSDLVRGRGDIGERSRLLGRLSQQMKRLGDRHRAAFVVVNQARCSGCACCITNSFGAAGATGGSAGQGREAGGNV-PAIGLLWSHCINTRFMVYRRDYRLPLLMSSSSMPINIDGQQQLPVSSSGGGLLSNAVAREITLEMSPCLPVHIRCAFVIERDGISGV 561
IRL VIDS++ALFR + +GD ER++++ +++QMKRL DR FVV NQ +T F AA G G V PA+GL WS+C++TRF++ RRD L+ S P + + G S + R + L +SP LP ++ C FV+E G+ GV
Sbjct: 186 IRLCVIDSMSALFRGEFSLSKGDTLERAKMIFTMAKQMKRLSDRWGLPFVVTNQ---------VTADFAAATFGVWEGGNADVVGDGVQPALGLSWSNCVHTRFLLSRRDANN--LIPSFPTPGSNPPSNPATADARSTGQSSRWI-RHMRLLLSPSLPSNLSCRFVLETAGVRGV 349
BLAST of mRNA_H-elongata_contig89952.16484.1 vs. uniprot
Match: W4H963_9STRA (RECA_2 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H963_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 4.890e-15 Identity = 50/122 (40.98%), Postives = 64/122 (52.46%), Query Frame = 1
Query: 10 LPRLMEAHGIRLVVIDSIAALFRSDLVRGRGDIGERSRLLGRLSQQMKRLGDRHRAAFVVVNQARCSGCACCITNSFGAAGATGGSAGQGREAGGNVPAIGLLWSHCINTRFMVYRRDYRLP 375
LP LME HG+RLVV+DSIAA+FR V D GER+R++ + M L ++RA FVVVNQ GN+PA+GL WS CIN RF++ R+ R P
Sbjct: 124 LPSLMEFHGVRLVVVDSIAAVFRGHSVDKAADAGERTRIMFDIVHCMHILAKQYRAVFVVVNQMTAD-----------------------MHNDGNMPALGLAWSSCINQRFLI-RKSVRAP 221
BLAST of mRNA_H-elongata_contig89952.16484.1 vs. uniprot
Match: A0A485L2Y6_9STRA (Aste57867_14947 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L2Y6_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 1.340e-14 Identity = 45/116 (38.79%), Postives = 65/116 (56.03%), Query Frame = 1
Query: 10 LPRLMEAHGIRLVVIDSIAALFRSDLVRGRGDIGERSRLLGRLSQQMKRLGDRHRAAFVVVNQARCSGCACCITNSFGAAGATGGSAGQGREAGGNVPAIGLLWSHCINTRFMVYR 357
LP+LM+ HG+RLVV+DS+AA+FR V + GER+R + + M+ L ++RA F+VVNQ SA E NVPA+GL WS C+N RF++++
Sbjct: 126 LPQLMQLHGVRLVVVDSVAAIFRGHSVEKASEAGERARTMFEIVNTMRILAKQYRAVFIVVNQM---------------------SANMHSE---NVPALGLAWSSCVNQRFLLHK 217
BLAST of mRNA_H-elongata_contig89952.16484.1 vs. uniprot
Match: A0A024US34_9STRA (RECA_2 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024US34_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 1.340e-14 Identity = 46/122 (37.70%), Postives = 64/122 (52.46%), Query Frame = 1
Query: 10 LPRLMEAHGIRLVVIDSIAALFRSDLVRGRGDIGERSRLLGRLSQQMKRLGDRHRAAFVVVNQARCSGCACCITNSFGAAGATGGSAGQGREAGGNVPAIGLLWSHCINTRFMVYRRDYRLP 375
LP LME HG+RLVV+DSIAA+FR V D G+R+R++ + M L ++RA F+VVN + GN+PA+GL WS C+N RF++ R+ R P
Sbjct: 125 LPSLMELHGVRLVVVDSIAAVFRGQSVEKAADAGDRTRMMFDIVHCMHILAKQYRAVFIVVNHMTAD-----------------------MQKDGNIPALGLAWSSCVNQRFLI-RKSARSP 222
BLAST of mRNA_H-elongata_contig89952.16484.1 vs. uniprot
Match: A0A397F2C1_9STRA (RECA_2 domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F2C1_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 1.360e-14 Identity = 50/122 (40.98%), Postives = 65/122 (53.28%), Query Frame = 1
Query: 10 LPRLMEAHGIRLVVIDSIAALFRSDLVRGRGDIGERSRLLGRLSQQMKRLGDRHRAAFVVVNQARCSGCACCITNSFGAAGATGGSAGQGREAGGNVPAIGLLWSHCINTRFMVYRRDYRLP 375
LP LME HG+RLVV+DSIAA+FR V D GER+R++ + M L ++RA FVVVNQ + GN+PA+GL WS CIN RF++ R+ R P
Sbjct: 124 LPSLMEFHGVRLVVVDSIAAVFRGHSVDKAADAGERTRIMFDIVHCMHILAKQYRAVFVVVNQMTAD-----------------------MQNDGNMPALGLAWSSCINQRFLI-RKSVRAP 221
BLAST of mRNA_H-elongata_contig89952.16484.1 vs. uniprot
Match: UPI001CB94751 (DNA repair protein XRCC3 homolog n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB94751) HSP 1 Score: 79.3 bits (194), Expect = 2.550e-14 Identity = 56/177 (31.64%), Postives = 94/177 (53.11%), Query Frame = 1
Query: 34 GIRLVVIDSIAALFRSDLVRGRGDIGERSRLLGRLSQQMKRLGDRHRAAFVVVNQARCSGCACCITNSFGAAGATGGSAGQGREAGGNV-PAIGLLWSHCINTRFMVYRRDYRLPLLMSSSSMPINIDGQQQLPVSSSGGGLLSNAVAREITLEMSPCLPVHIRCAFVIERDGISGV 561
++L+VIDSIAALFRSD GD+ +R+ L ++S +K +R A V+ NQ + ++ G +G G+ + +G V PA+GL W++C+N+R L +S + + + + LPV +GG ++ RE+ + +P LP H C F+I ++G+ GV
Sbjct: 141 NVKLIVIDSIAALFRSDFENNAGDLKKRASLFFKISSVLKTYANRFGIAVVLTNQV-----VDLMGDNDGLSGVRVGNLEEMYTSGRRVCPALGLSWANCVNSR-----------LFLSMNEVVEAVGNENNLPVDENGG-FVNRRKRRELHVVFAPHLP-HSSCEFLIRKEGVFGV 299
BLAST of mRNA_H-elongata_contig89952.16484.1 vs. uniprot
Match: W4HBI8_9STRA (RECA_2 domain-containing protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HBI8_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 5.930e-14 Identity = 47/117 (40.17%), Postives = 61/117 (52.14%), Query Frame = 1
Query: 10 LPRLMEAHGIRLVVIDSIAALFRSDLVRGRGDIGERSRLLGRLSQQMKRLGDRHRAAFVVVNQARCSGCACCITNSFGAAGATGGSAGQGREAGGNVPAIGLLWSHCINTRFMVYRR 360
LP LME HG+RLVV+DSIAA+FR V D GER+R++ + M L ++RA FVVVNQ GN+PA+GL WS CIN R+++ R
Sbjct: 124 LPSLMEFHGVRLVVVDSIAAVFRGHSVDKAADAGERTRIMFDIVHCMHILAKQYRAVFVVVNQMTAD-----------------------MHNDGNMPALGLAWSSCINQRYVLDER 217
BLAST of mRNA_H-elongata_contig89952.16484.1 vs. uniprot
Match: A0A6G0WDY1_9STRA (RECA_2 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WDY1_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 6.570e-14 Identity = 48/122 (39.34%), Postives = 68/122 (55.74%), Query Frame = 1
Query: 10 LPRLMEAHGIRLVVIDSIAALFRSDLVRGRGDIGERSRLLGRLSQQMKRLGDRHRAAFVVVNQARCSGCACCITNSFGAAGATGGSAGQGREAGGNVPAIGLLWSHCINTRFMVYRRDYRLP 375
LP LM+ HG+RLVVIDSIAA+FR V + G+R+R++ + M+ L +++RA F+VVNQ + + N NVPA+GL WS CIN RF++ R+ R P
Sbjct: 122 LPSLMQLHGVRLVVIDSIAAIFRGQSVEKASEAGDRTRVMFDVVNCMRILANQYRAVFIVVNQMSAN-----LQND-------------------NVPALGLAWSSCINQRFLI-RKTPRSP 218 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89952.16484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig89952.16484.1 >prot_H-elongata_contig89952.16484.1 ID=prot_H-elongata_contig89952.16484.1|Name=mRNA_H-elongata_contig89952.16484.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp MEHLPRLMEAHGIRLVVIDSIAALFRSDLVRGRGDIGERSRLLGRLSQQMback to top mRNA from alignment at H-elongata_contig89952:236..1949+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig89952.16484.1 ID=mRNA_H-elongata_contig89952.16484.1|Name=mRNA_H-elongata_contig89952.16484.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1714bp|location=Sequence derived from alignment at H-elongata_contig89952:236..1949+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig89952:236..1949+ >mRNA_H-elongata_contig89952.16484.1 ID=mRNA_H-elongata_contig89952.16484.1|Name=mRNA_H-elongata_contig89952.16484.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at H-elongata_contig89952:236..1949+ (Himanthalia elongata Himel1 dioecious)back to top |