mRNA_H-elongata_contig89932.16482.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89932.16482.1
Unique NamemRNA_H-elongata_contig89932.16482.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig89932.16482.1 vs. uniprot
Match: A0A6H5L6M4_9PHAE (EFG_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6M4_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.240e-28
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 FSPEKGDVVFCSALDGWGFGLGDFARIWAKRVGCKPRELRQMLWGSFVLNPKTKKV 168
            FSPE G+VVFCSALDGWGFGLGDFAR+WAKRVGCKPRELR+MLWGSFVLN KTKKV
Sbjct:   83 FSPEYGNVVFCSALDGWGFGLGDFARLWAKRVGCKPRELRRMLWGSFVLNAKTKKV 138
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BLAST of mRNA_H-elongata_contig89932.16482.1 vs. uniprot
Match: A0A836CNE8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNE8_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.790e-19
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 FSPEKGDVVFCSALDGWGFGLGDFARIWAKRVGCKPRELRQMLWGSFVLNPKTKK 165
            F PE+G+VVF SALDGWGFGLG FAR+WAKR+G KP  LR+MLWG F  + K KK
Sbjct:  355 FRPEEGEVVFSSALDGWGFGLGQFARLWAKRIGAKPPLLRKMLWGEFAYSAKAKK 409
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BLAST of mRNA_H-elongata_contig89932.16482.1 vs. uniprot
Match: A0A164N1B4_9AGAM (p-loop containing nucleoside triphosphate hydrolase protein n=2 Tax=Sistotremastrum TaxID=139133 RepID=A0A164N1B4_9AGAM)

HSP 1 Score: 83.6 bits (205), Expect = 2.080e-17
Identity = 33/56 (58.93%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 FSPEKGDVVFCSALDGWGFGLGDFARIWAKRVGCKPRELRQMLWGSFVLNPKTKKV 168
            F+PEKG+V+FCSA+DGWGF LG FA+++A ++G K   LR++LWG + L+PKTK+V
Sbjct:  228 FAPEKGNVIFCSAIDGWGFRLGKFAQLYASKLGVKEANLRRVLWGDYYLDPKTKRV 283
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BLAST of mRNA_H-elongata_contig89932.16482.1 vs. uniprot
Match: A0A8H8CH50_PSICU (Tr-type G domain-containing protein n=1 Tax=Psilocybe cubensis TaxID=181762 RepID=A0A8H8CH50_PSICU)

HSP 1 Score: 82.8 bits (203), Expect = 3.880e-17
Identity = 34/56 (60.71%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 FSPEKGDVVFCSALDGWGFGLGDFARIWAKRVGCKPRELRQMLWGSFVLNPKTKKV 168
            F+PEKG+V+F SALDGWGF +G FA+++AK++G K   LR++LWG F L+PKTK+V
Sbjct:  230 FAPEKGNVIFASALDGWGFRVGKFAQLYAKKLGIKEANLRRVLWGDFFLDPKTKRV 285
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BLAST of mRNA_H-elongata_contig89932.16482.1 vs. uniprot
Match: A0A137QLJ8_9AGAR (Ribosome assembly protein 1 n=1 Tax=Leucoagaricus sp. SymC.cos TaxID=1714833 RepID=A0A137QLJ8_9AGAR)

HSP 1 Score: 81.6 bits (200), Expect = 9.900e-17
Identity = 34/56 (60.71%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 FSPEKGDVVFCSALDGWGFGLGDFARIWAKRVGCKPRELRQMLWGSFVLNPKTKKV 168
            F+PEKG+VVF SALDGWGF +G FA+++A+++G K   LR++LWG + L+PKTKKV
Sbjct:  231 FAPEKGNVVFASALDGWGFRVGKFAQLYAQKLGIKEMNLRRVLWGDYFLDPKTKKV 286
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BLAST of mRNA_H-elongata_contig89932.16482.1 vs. uniprot
Match: A0A409Y890_9AGAR (Tr-type G domain-containing protein n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409Y890_9AGAR)

HSP 1 Score: 81.3 bits (199), Expect = 1.350e-16
Identity = 33/56 (58.93%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 FSPEKGDVVFCSALDGWGFGLGDFARIWAKRVGCKPRELRQMLWGSFVLNPKTKKV 168
            F+PEKG+V+F SA+DGWGF +G FA+I+A+++G K   LR++LWG F L+PKTK+V
Sbjct:  233 FAPEKGNVIFASAIDGWGFRVGKFAQIYAQKLGIKEANLRRVLWGDFFLDPKTKRV 288
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BLAST of mRNA_H-elongata_contig89932.16482.1 vs. uniprot
Match: A0A8H5G953_9AGAR (Tr-type G domain-containing protein n=1 Tax=Leucoagaricus leucothites TaxID=201217 RepID=A0A8H5G953_9AGAR)

HSP 1 Score: 81.3 bits (199), Expect = 1.350e-16
Identity = 34/56 (60.71%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 FSPEKGDVVFCSALDGWGFGLGDFARIWAKRVGCKPRELRQMLWGSFVLNPKTKKV 168
            F+PEKG+VVF SALDGWGF +G FA+++A+++G K   LR++LWG F L+PK+KKV
Sbjct:  231 FAPEKGNVVFASALDGWGFRVGKFAQLYAQKLGIKEANLRRVLWGDFFLDPKSKKV 286
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BLAST of mRNA_H-elongata_contig89932.16482.1 vs. uniprot
Match: A0A0C3CI17_HEBCY (Tr-type G domain-containing protein n=1 Tax=Hebeloma cylindrosporum h7 TaxID=686832 RepID=A0A0C3CI17_HEBCY)

HSP 1 Score: 80.9 bits (198), Expect = 1.850e-16
Identity = 32/56 (57.14%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 FSPEKGDVVFCSALDGWGFGLGDFARIWAKRVGCKPRELRQMLWGSFVLNPKTKKV 168
            F+PEKG+V+F SA+DGWGF +G FA+++AK++G K   L+++LWG F L+PKTK+V
Sbjct:  230 FAPEKGNVIFASAIDGWGFRVGKFAQLYAKKLGIKEANLKRVLWGDFFLDPKTKRV 285
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BLAST of mRNA_H-elongata_contig89932.16482.1 vs. uniprot
Match: A0A2H3DUL2_ARMGA (P-loop containing nucleoside triphosphate hydrolase protein n=4 Tax=Physalacriaceae TaxID=862241 RepID=A0A2H3DUL2_ARMGA)

HSP 1 Score: 80.9 bits (198), Expect = 1.850e-16
Identity = 34/56 (60.71%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 FSPEKGDVVFCSALDGWGFGLGDFARIWAKRVGCKPRELRQMLWGSFVLNPKTKKV 168
            F+PEKG+VVF SA+DGWGF +G FA+++A ++G K   LR++LWG F L+PKTKKV
Sbjct:  230 FAPEKGNVVFASAIDGWGFRVGKFAQLYAVKLGMKEANLRRVLWGDFFLDPKTKKV 285
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BLAST of mRNA_H-elongata_contig89932.16482.1 vs. uniprot
Match: E2LWE7_MONPE (GTP_EFTU_D2 domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LWE7_MONPE)

HSP 1 Score: 80.5 bits (197), Expect = 2.440e-16
Identity = 33/56 (58.93%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 FSPEKGDVVFCSALDGWGFGLGDFARIWAKRVGCKPRELRQMLWGSFVLNPKTKKV 168
            F+PEKG+V+F SA+DGWGF +G FA+++A ++G K   LR++LWG F L+PKTKKV
Sbjct:   55 FAPEKGNVIFASAIDGWGFRVGKFAQLYATKLGIKEGNLRRVLWGDFFLDPKTKKV 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89932.16482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6M4_9PHAE1.240e-2891.07EFG_C domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A836CNE8_9STRA1.790e-1969.09P-loop containing nucleoside triphosphate hydrolas... [more]
A0A164N1B4_9AGAM2.080e-1758.93p-loop containing nucleoside triphosphate hydrolas... [more]
A0A8H8CH50_PSICU3.880e-1760.71Tr-type G domain-containing protein n=1 Tax=Psiloc... [more]
A0A137QLJ8_9AGAR9.900e-1760.71Ribosome assembly protein 1 n=1 Tax=Leucoagaricus ... [more]
A0A409Y890_9AGAR1.350e-1658.93Tr-type G domain-containing protein n=1 Tax=Gymnop... [more]
A0A8H5G953_9AGAR1.350e-1660.71Tr-type G domain-containing protein n=1 Tax=Leucoa... [more]
A0A0C3CI17_HEBCY1.850e-1657.14Tr-type G domain-containing protein n=1 Tax=Hebelo... [more]
A0A2H3DUL2_ARMGA1.850e-1660.71P-loop containing nucleoside triphosphate hydrolas... [more]
E2LWE7_MONPE2.440e-1658.93GTP_EFTU_D2 domain-containing protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89932contigH-elongata_contig89932:667..834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue2.7e-24
Seed eggNOG ortholog2880.D7G3I9
Preferred nameEFTUD1
KEGG koko:K03234,ko:K14536
KEGG Pathwayko03008,ko04152,ko04921,map03008,map04152,map04921
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006412,GO:0006414,GO:0006417,GO:0006448,GO:0006518,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019222,GO:0019538,GO:0019637,GO:0019693,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0042254,GO:0042255,GO:0042256,GO:0042278,GO:0042802,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045727,GO:0045901,GO:0046039,GO:0046128,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0055086,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0072521,GO:0080090,GO:0097159,GO:0097367,GO:1901068,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1990145,GO:2000112
EggNOG free text desc.GTPase activity
EggNOG OGsCOG0480@1,KOG0467@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03012,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931298.9156837-CDS-H-elongata_contig89932:666..8341622931298.9156837-CDS-H-elongata_contig89932:666..834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89932 667..834 -
1691679778.9734519-CDS-H-elongata_contig89932:666..8341691679778.9734519-CDS-H-elongata_contig89932:666..834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89932 667..834 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89932.16482.1prot_H-elongata_contig89932.16482.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89932 667..834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89932.16482.1

>prot_H-elongata_contig89932.16482.1 ID=prot_H-elongata_contig89932.16482.1|Name=mRNA_H-elongata_contig89932.16482.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
FSPEKGDVVFCSALDGWGFGLGDFARIWAKRVGCKPRELRQMLWGSFVLN
PKTKKV
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mRNA from alignment at H-elongata_contig89932:667..834-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89932.16482.1 ID=mRNA_H-elongata_contig89932.16482.1|Name=mRNA_H-elongata_contig89932.16482.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig89932:667..834- (Himanthalia elongata Himel1 dioecious)
TTCAGCCCGGAGAAGGGCGACGTGGTGTTCTGCTCCGCGCTCGACGGATG
GGGTTTCGGCCTTGGGGATTTCGCCAGGATATGGGCCAAGCGGGTAGGAT
GCAAGCCGAGAGAGCTGAGGCAGATGCTTTGGGGCAGCTTCGTCCTAAAC
CCGAAGACAAAGAAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig89932:667..834-

>mRNA_H-elongata_contig89932.16482.1 ID=mRNA_H-elongata_contig89932.16482.1|Name=mRNA_H-elongata_contig89932.16482.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig89932:667..834- (Himanthalia elongata Himel1 dioecious)
TTCAGCCCGGAGAAGGGCGACGTGGTGTTCTGCTCCGCGCTCGACGGATG
GGGTTTCGGCCTTGGGGATTTCGCCAGGATATGGGCCAAGCGGGTAGGAT
GCAAGCCGAGAGAGCTGAGGCAGATGCTTTGGGGCAGCTTCGTCCTAAAC
CCGAAGACAAAGAAGGTGTTCAGCCCGGAGAAGGGCGACGTGGTGTTCTG
CTCCGCGCTCGACGGATGGGGTTTCGGCCTTGGGGATTTCGCCAGGATAT
GGGCCAAGCGGGTAGGATGCAAGCCGAGAGAGCTGAGGCAGATGCTTTGG
GGCAGCTTCGTCCTAAACCCGAAGACAAAGAAGGTG
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