mRNA_H-elongata_contig89876.16480.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89876.16480.1
Unique NamemRNA_H-elongata_contig89876.16480.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig89876.16480.1 vs. uniprot
Match: A0A6H5JC70_9PHAE (HSP70 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JC70_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.140e-10
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    7 PHETPAFKSSEVEPALKSLKTLVVKLSKKPAPKKEKPAVKASDNSTEETA 156
            PHETP FKS+EVEPALK+LK LV KLSKKPAPKKEKPA   +DNSTEE A
Sbjct:  890 PHETPVFKSAEVEPALKALKNLVTKLSKKPAPKKEKPAK--ADNSTEEAA 937
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BLAST of mRNA_H-elongata_contig89876.16480.1 vs. uniprot
Match: A0A2R4K3C3_SACJA (HSP70 n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2R4K3C3_SACJA)

HSP 1 Score: 66.2 bits (160), Expect = 2.410e-9
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:   10 HETPAFKSSEVEPALKSLKTLVVKLSKKPAPKKEKPAVKASDNSTEETAGGSGGEA 177
            HETP FKS++VEPALK LKTL+ KL+KKP PKKEKPA   +DNSTEE AGG G +A
Sbjct:  878 HETPVFKSTDVEPALKPLKTLITKLAKKPVPKKEKPAK--ADNSTEE-AGGDGDDA 930
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89876.16480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JC70_9PHAE1.140e-1080.00HSP70 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A2R4K3C3_SACJA2.410e-971.43HSP70 n=1 Tax=Saccharina japonica TaxID=88149 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89876contigH-elongata_contig89876:4..568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size567
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931298.7157047-CDS-H-elongata_contig89876:3..3661622931298.7157047-CDS-H-elongata_contig89876:3..366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89876 4..366 +
1691679778.9107182-CDS-H-elongata_contig89876:3..3661691679778.9107182-CDS-H-elongata_contig89876:3..366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89876 4..366 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931298.7322173-UTR-H-elongata_contig89876:366..5681622931298.7322173-UTR-H-elongata_contig89876:366..568Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89876 367..568 +
1691679778.9222255-UTR-H-elongata_contig89876:366..5681691679778.9222255-UTR-H-elongata_contig89876:366..568Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89876 367..568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89876.16480.1prot_H-elongata_contig89876.16480.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89876 4..366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89876.16480.1

>prot_H-elongata_contig89876.16480.1 ID=prot_H-elongata_contig89876.16480.1|Name=mRNA_H-elongata_contig89876.16480.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
FAPHETPAFKSSEVEPALKSLKTLVVKLSKKPAPKKEKPAVKASDNSTEE
TAGGSGGEANAGDSSNSTEEGGGEAANGERVDGAEEEDEEASVERQSQAR
GEDEEGGRGGEASESVKDEL*
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mRNA from alignment at H-elongata_contig89876:4..568+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89876.16480.1 ID=mRNA_H-elongata_contig89876.16480.1|Name=mRNA_H-elongata_contig89876.16480.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=565bp|location=Sequence derived from alignment at H-elongata_contig89876:4..568+ (Himanthalia elongata Himel1 dioecious)
TTCGCCCCACATGAGACGCCGGCTTTTAAATCTTCGGAGGTGGAGCCCGC
GCTGAAGAGCCTCAAGACGCTAGTGGTGAAGCTGTCCAAGAAGCCCGCGC
CGAAGAAAGAGAAGCCCGCGGTAAAGGCTAGTGATAACTCTACCGAAGAG
ACGGCGGGGGGGAGCGGCGGAGAGGCAAATGCTGGTGATAGCTCAAATTC
TACCGAGGAAGGGGGAGGGGAAGCTGCAAACGGGGAGAGGGTAGATGGAG
CTGAGGAAGAGGATGAGGAAGCGTCGGTAGAGCGGCAGAGTCAAGCGCGA
GGGGAGGATGAAGAAGGTGGAAGAGGTGGCGAGGCTAGCGAGTCTGTCAA
AGACGAGCTCTAACGTAGCTAGCTCTATAGTGAAGCGGCTTTTTGTACCT
GGCACGGATGCCGTAGTTCACTTTCATTTGTGCGATGCCGTAGTGCGATA
AGAGGACCCGGCCGGGAATTTTGAAGAGGCTCGGCCGAACCAACTTTGGC
GATACCGACATCGACATCGACACACCCTGTTGCCGCGGCTTTGGTTCGTT
TGTTCTTTGACGACG
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Coding sequence (CDS) from alignment at H-elongata_contig89876:4..568+

>mRNA_H-elongata_contig89876.16480.1 ID=mRNA_H-elongata_contig89876.16480.1|Name=mRNA_H-elongata_contig89876.16480.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig89876:4..568+ (Himanthalia elongata Himel1 dioecious)
TTCGCCCCACATGAGACGCCGGCTTTTAAATCTTCGGAGGTGGAGCCCGC
GCTGAAGAGCCTCAAGACGCTAGTGGTGAAGCTGTCCAAGAAGCCCGCGC
CGAAGAAAGAGAAGCCCGCGGTAAAGGCTAGTGATAACTCTACCGAAGAG
ACGGCGGGGGGGAGCGGCGGAGAGGCAAATGCTGGTGATAGCTCAAATTC
TACCGAGGAAGGGGGAGGGGAAGCTGCAAACGGGGAGAGGGTAGATGGAG
CTGAGGAAGAGGATGAGGAAGCGTCGGTAGAGCGGCAGAGTCAAGCGCGA
GGGGAGGATGAAGAAGGTGGAAGAGGTGGCGAGGCTAGCGAGTCTGTCAA
AGACGAGCTCTAATTCGCCCCACATGAGACGCCGGCTTTTAAATCTTCGG
AGGTGGAGCCCGCGCTGAAGAGCCTCAAGACGCTAGTGGTGAAGCTGTCC
AAGAAGCCCGCGCCGAAGAAAGAGAAGCCCGCGGTAAAGGCTAGTGATAA
CTCTACCGAAGAGACGGCGGGGGGGAGCGGCGGAGAGGCAAATGCTGGTG
ATAGCTCAAATTCTACCGAGGAAGGGGGAGGGGAAGCTGCAAACGGGGAG
AGGGTAGATGGAGCTGAGGAAGAGGATGAGGAAGCGTCGGTAGAGCGGCA
GAGTCAAGCGCGAGGGGAGGATGAAGAAGGTGGAAGAGGTGGCGAGGCTA
GCGAGTCTGTCAAAGACGAGCTCTAA
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