prot_H-elongata_contig89812.16477.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig89812.16477.1
Unique Name	prot_H-elongata_contig89812.16477.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	134

Homology

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BLAST of mRNA_H-elongata_contig89812.16477.1 vs. uniprot
Match: D7G1Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y9_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 8.780e-71
Identity = 110/126 (87.30%), Postives = 120/126 (95.24%), Query Frame = 0

Query:    1 DDSVDQIFVFFPDDEKVGVKPIRSYSDKMLAEEVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDAELMLDITEHTLVPQHTVLTPEQKSELLKRYKLKDTQLPRIQATDPVARFYGMQVGK 126
            DD +DQIFVFFPDDEKVGVKPIRSYS+KML EEVK+AIIV+KGGITPFARSAI ELCAQREVQVEDFKDAELMLDITEHTLVP+H VL+ EQK+ELLKRYKLKDTQLPRIQ+TDPVARF+GMQ G+
Sbjct:   66 DDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQ 191

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BLAST of mRNA_H-elongata_contig89812.16477.1 vs. uniprot
Match: A0A835YLJ3_9STRA (RNA polymerase Rpb5, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ3_9STRA)

HSP 1 Score: 177 bits (448), Expect = 9.340e-54
Identity = 86/126 (68.25%), Postives = 106/126 (84.13%), Query Frame = 0

Query:    1 DDSVDQIFVFFPDDEKVGVKPIRSYSDKMLAEEVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDAELMLDITEHTLVPQHTVLTPEQKSELLKRYKLKDTQLPRIQATDPVARFYGMQVGK 126
            DD  D+IFVFFPD+EKVGVK IR+Y D+M  E V+K+IIVV+GG+TP +R A  +LC QR VQ+EDFKDAELM+DIT+H LVP+H VL  E+K+ELLKRYKL DTQLPRI +TDPVAR+YG+Q G+
Sbjct:   67 DDPSDRIFVFFPDEEKVGVKTIRTYGDRMKDENVRKSIIVVRGGMTPLSRDANAQLCQQRGVQIEDFKDAELMVDITDHVLVPEHQVLNNEEKAELLKRYKLTDTQLPRIHSTDPVARYYGLQRGQ 192

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BLAST of mRNA_H-elongata_contig89812.16477.1 vs. uniprot
Match: A0A1Z5K1Q5_FISSO (DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K1Q5_FISSO)

HSP 1 Score: 155 bits (393), Expect = 2.850e-45
Identity = 77/126 (61.11%), Postives = 101/126 (80.16%), Query Frame = 0

Query:    1 DDSVDQIFVFFPDDEKVGVKPIRSYSDKMLAEEVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDAELMLDITEHTLVPQHTVLTPEQKSELLKRYKLKDTQLPRIQATDPVARFYGMQVGK 126
            DD  DQ+FVFFP+DEKVGVKPI+ Y+D+M AE V  AI+V+K  ITPFA+ A+ E+      ++E FK++EL++DIT+H LVPQH VLT  +K+ELLKRY+LKDTQLPRIQ  DP+AR+YGM+ G+
Sbjct:   81 DDEHDQLFVFFPEDEKVGVKPIKVYTDRMRAEGVSNAIMVLKVDITPFAKQAVQEM--SDSFRMEHFKESELLVDITQHQLVPQHQVLTAAEKAELLKRYRLKDTQLPRIQPNDPIARYYGMKRGQ 204

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BLAST of mRNA_H-elongata_contig89812.16477.1 vs. uniprot
Match: B7FSY0_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSY0_PHATC)

HSP 1 Score: 155 bits (393), Expect = 3.110e-45
Identity = 74/126 (58.73%), Postives = 102/126 (80.95%), Query Frame = 0

Query:    1 DDSVDQIFVFFPDDEKVGVKPIRSYSDKMLAEEVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDAELMLDITEHTLVPQHTVLTPEQKSELLKRYKLKDTQLPRIQATDPVARFYGMQVGK 126
            DD  +Q+F+FFP+DEKVGVKPI+ Y+D+M AE V  AII+++  ITPFA+ A+ E+      ++E FK++EL++DIT+H LVP H VLTP +K+ELLKRY+LKD+QLPRIQ+ DPVAR+YGM+ G+
Sbjct:   84 DDDTNQLFIFFPEDEKVGVKPIKVYTDRMRAESVSNAIIILRVDITPFAKQAVQEM--SDSFRIEHFKESELLVDITKHQLVPVHQVLTPNEKNELLKRYRLKDSQLPRIQSNDPVARYYGMRRGQ 207

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BLAST of mRNA_H-elongata_contig89812.16477.1 vs. uniprot
Match: A0A7S2KP14_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KP14_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.820e-44
Identity = 76/126 (60.32%), Postives = 100/126 (79.37%), Query Frame = 0

Query:    1 DDSVDQIFVFFPDDEKVGVKPIRSYSDKMLAEEVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDAELMLDITEHTLVPQHTVLTPEQKSELLKRYKLKDTQLPRIQATDPVARFYGMQVGK 126
            DD  +Q+FVFFP+DEKVGVKPI++ +D+M  E V +AI+V++  ITP AR A+ EL      ++E FK++EL++DITEHTLVP+H VL+  +K ELLKRY+LKDTQLPRIQ  DPVARFYGM+ G+
Sbjct:   85 DDESNQLFVFFPEDEKVGVKPIKTLTDRMKDESVSRAILVLRVDITPIARQALQEL--SESFRIEHFKESELLVDITEHTLVPEHQVLSTNEKQELLKRYRLKDTQLPRIQPNDPVARFYGMKRGQ 208

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BLAST of mRNA_H-elongata_contig89812.16477.1 vs. uniprot
Match: B8C1Q1_THAPS (RPB5,-like protein to RNA polymerase i n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1Q1_THAPS)

HSP 1 Score: 153 bits (387), Expect = 2.370e-44
Identity = 74/126 (58.73%), Postives = 101/126 (80.16%), Query Frame = 0

Query:    1 DDSVDQIFVFFPDDEKVGVKPIRSYSDKMLAEEVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDAELMLDITEHTLVPQHTVLTPEQKSELLKRYKLKDTQLPRIQATDPVARFYGMQVGK 126
            DD  +Q+FVFFP+DEKVGVKPI+  +D+M  E V  AI+V++G ITPFA+ A++E+      ++E FK+AEL++DITEHTLVP+H VL+  +K ELLKRY+L++TQLPRIQ  DPVAR+YGM+ G+
Sbjct:   82 DDETNQLFVFFPEDEKVGVKPIKILTDRMKDENVSNAILVLRGDITPFAKQAVLEM--SDSFRLEHFKEAELLVDITEHTLVPEHLVLSQNEKQELLKRYRLRETQLPRIQPNDPVARYYGMKRGQ 205

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BLAST of mRNA_H-elongata_contig89812.16477.1 vs. uniprot
Match: W4GMP1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4GMP1_9STRA)

HSP 1 Score: 152 bits (385), Expect = 2.590e-44
Identity = 75/126 (59.52%), Postives = 100/126 (79.37%), Query Frame = 0

Query:    1 DDSVDQIFVFFPDDEKVGVKPIRSYSDKMLAEEVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDAELMLDITEHTLVPQHTVLTPEQKSELLKRYKLKDTQLPRIQATDPVARFYGMQVGK 126
            DD  D +FVF+P+D KVGVKPIR+Y ++M  E V KAI++V+ GITPFA+ A+ E+  +   +++ FK+ EL++DITEHTLVP H VLT E+K  LLKRYKLKDTQLPR+QA+DP+AR+YGM  G+
Sbjct:   61 DDPSDNLFVFYPEDAKVGVKPIRNYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKENELLVDITEHTLVPVHKVLTKEEKLALLKRYKLKDTQLPRMQASDPIARYYGMSRGQ 184

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BLAST of mRNA_H-elongata_contig89812.16477.1 vs. uniprot
Match: A0A7S1ZQK9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZQK9_TRICV)

HSP 1 Score: 151 bits (382), Expect = 4.210e-44
Identity = 73/125 (58.40%), Postives = 98/125 (78.40%), Query Frame = 0

Query:    1 DDSVDQIFVFFPDDEKVGVKPIRSYSDKMLAEEVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDAELMLDITEHTLVPQHTVLTPEQKSELLKRYKLKDTQLPRIQATDPVARFYGMQVG 125
            DD  +Q+FVFFP+DEKVGVKPI+ Y+D+M  E V  A++V++  ITPFA+ A+ E+      ++E FK+AEL++DITEH LVP+H VL+  +K ELLKRY+LK+TQLPRIQ  DPVAR+YGM+ G
Sbjct:   42 DDETNQLFVFFPEDEKVGVKPIKVYTDRMREEAVSNAVLVLRVDITPFAKQAVQEM--SDSFRIEHFKEAELLVDITEHKLVPEHQVLSQNEKQELLKRYRLKETQLPRIQTNDPVARYYGMKRG 164

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BLAST of mRNA_H-elongata_contig89812.16477.1 vs. uniprot
Match: A0A7S3V5Q1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5Q1_9STRA)

HSP 1 Score: 153 bits (386), Expect = 6.930e-44
Identity = 74/126 (58.73%), Postives = 101/126 (80.16%), Query Frame = 0

Query:    1 DDSVDQIFVFFPDDEKVGVKPIRSYSDKMLAEEVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDAELMLDITEHTLVPQHTVLTPEQKSELLKRYKLKDTQLPRIQATDPVARFYGMQVGK 126
            DD  DQ+FVFFP+DEKVGVKPI+ Y+D+M  E V  +I+V++  IT +A+ A+ E+      ++E FK+AEL++DITEHTLVP+H VL+P +K+ELLKRY+LK+TQLPRIQ  DPVAR+YGM+ G+
Sbjct:  108 DDETDQLFVFFPEDEKVGVKPIKVYTDRMKDEAVTNSILVLRVDITGYAKQAVQEM--SDSCRIEHFKEAELLVDITEHTLVPEHQVLSPNEKAELLKRYRLKETQLPRIQPNDPVARYYGMKRGQ 231

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BLAST of mRNA_H-elongata_contig89812.16477.1 vs. uniprot
Match: A0A067CT03_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CT03_SAPPC)

HSP 1 Score: 151 bits (381), Expect = 1.140e-43
Identity = 74/126 (58.73%), Postives = 99/126 (78.57%), Query Frame = 0

Query:    1 DDSVDQIFVFFPDDEKVGVKPIRSYSDKMLAEEVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDAELMLDITEHTLVPQHTVLTPEQKSELLKRYKLKDTQLPRIQATDPVARFYGMQVGK 126
            DD  D +FVF+PDD KVGVKPIR+Y ++M  E V KAI++V+ GITPFA+ A+ E+  +   +++ FK+ EL++DITEHTLVP H VLT E+K  LLKRYKLKD+QLPR+Q +DP+AR+YGM  G+
Sbjct:   64 DDPSDNLFVFYPDDAKVGVKPIRTYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKETELLVDITEHTLVPVHKVLTREEKIALLKRYKLKDSQLPRMQVSDPIARYYGMTRGQ 187

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig89812.16477.1 vs. uniprot

BLAST of mRNA_H-elongata_contig89812.16477.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G1Y9_ECTSI	8.780e-71	87.30	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835YLJ3_9STRA	9.340e-54	68.25	RNA polymerase Rpb5, C-terminal domain-containing ...	[more]
A0A1Z5K1Q5_FISSO	2.850e-45	61.11	DNA-directed RNA polymerases I, II, and III subuni...	[more]
B7FSY0_PHATC	3.110e-45	58.73	Predicted protein n=2 Tax=Phaeodactylum tricornutu...	[more]
A0A7S2KP14_9STRA	1.820e-44	60.32	Hypothetical protein n=1 Tax=Leptocylindrus danicu...	[more]
B8C1Q1_THAPS	2.370e-44	58.73	RPB5,-like protein to RNA polymerase i n=1 Tax=Tha...	[more]
W4GMP1_9STRA	2.590e-44	59.52	Uncharacterized protein n=3 Tax=Aphanomyces TaxID=...	[more]
A0A7S1ZQK9_TRICV	4.210e-44	58.40	Hypothetical protein n=1 Tax=Trieres chinensis Tax...	[more]
A0A7S3V5Q1_9STRA	6.930e-44	58.73	Hypothetical protein n=1 Tax=Chaetoceros debilis T...	[more]
A0A067CT03_SAPPC	1.140e-43	58.73	Uncharacterized protein n=4 Tax=Saprolegniaceae Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 75..125 e-value: 1.7E-19 score: 69.5
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	GENE3D	3.40.1340.10		coord: 1..74 e-value: 1.3E-17 score: 66.2
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	SUPERFAMILY	53036	Eukaryotic RPB5 N-terminal domain	coord: 2..74
IPR035913	RPB5-like RNA polymerase subunit superfamily	GENE3D	3.90.940.20		coord: 75..128 e-value: 3.7E-20 score: 73.4
IPR035913	RPB5-like RNA polymerase subunit superfamily	SUPERFAMILY	55287	RPB5-like RNA polymerase subunit	coord: 72..126
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 1..29 e-value: 1.1E-5 score: 25.9
None	No IPR available	PANTHER	PTHR10535:SF8		coord: 1..126
None	No IPR available	PRODOM	PD005155		coord: 81..126 e-value: 3.0E-13 score: 177.0
IPR039531	DNA-directed RNA polymerase subunit Rpb5-like	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 1..126

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig89812	contig	H-elongata_contig89812:476..2244 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig89812.16477.1	mRNA_H-elongata_contig89812.16477.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig89812 476..2244 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig89812.16477.1 ID=prot_H-elongata_contig89812.16477.1|Name=mRNA_H-elongata_contig89812.16477.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
DDSVDQIFVFFPDDEKVGVKPIRSYSDKMLAEEVKKAIIVVKGGITPFAR
SAIMELCAQREVQVEDFKDAELMLDITEHTLVPQHTVLTPEQKSELLKRY
KLKDTQLPRIQATDPVARFYGMQVGKRSLVSTC*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000783	RNA_pol_subH/Rpb5_C
IPR036710	RNA_pol_Rpb5_N_sf
IPR035913	RPB5-like_sf
IPR005571	RNA_pol_Rpb5_N
IPR039531	Rpb5-like