mRNA_H-elongata_contig8978.16475.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8978.16475.1
Unique NamemRNA_H-elongata_contig8978.16475.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8978.16475.1 vs. uniprot
Match: D8LDD0_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDD0_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.430e-5
Identity = 47/124 (37.90%), Postives = 58/124 (46.77%), Query Frame = 1 
Query:   43 SRTATFPLFDVAE------TLHRPGSSSVAPSQSDN---------CPLLGPNNFATCSTGSDPTKDEAHSVEAGGL----GLPITGFLRVEVVPLAGSEVTFRPGEARRAELIRQREGADKTER 357
            +R A FPL DV        T H     S + + SD+           L  P   A  S    PT     +   G +    G  + GFL+VE+V L G+EVTFRPGEAR AELI+QR  A   ER
Sbjct:  118 ARLAIFPLVDVTSDGGGTSTKHPQSHPSNSSASSDDGFGNQRCAAAQLNDPMCIALASGEGRPTAGADAASPPGTMENTAGFRLKGFLKVELVGLDGAEVTFRPGEARIAELIKQRNDAAAAER 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8978.16475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDD0_ECTSI1.430e-537.90PA domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8978contigH-elongata_contig8978:6856..7477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size380
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931298.205724-CDS-H-elongata_contig8978:6856..71871622931298.205724-CDS-H-elongata_contig8978:6856..7187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8978 6857..7187 -
1691679778.7417734-CDS-H-elongata_contig8978:6856..71871691679778.7417734-CDS-H-elongata_contig8978:6856..7187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8978 6857..7187 -
1622931298.2221172-CDS-H-elongata_contig8978:7430..74771622931298.2221172-CDS-H-elongata_contig8978:7430..7477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8978 7431..7477 -
1691679778.7548928-CDS-H-elongata_contig8978:7430..74771691679778.7548928-CDS-H-elongata_contig8978:7430..7477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8978 7431..7477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8978.16475.1prot_H-elongata_contig8978.16475.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8978 6857..7477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8978.16475.1

>prot_H-elongata_contig8978.16475.1 ID=prot_H-elongata_contig8978.16475.1|Name=mRNA_H-elongata_contig8978.16475.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
AAASFPPHPPQHVNSRTATFPLFDVAETLHRPGSSSVAPSQSDNCPLLGP
NNFATCSTGSDPTKDEAHSVEAGGLGLPITGFLRVEVVPLAGSEVTFRPG
EARRAELIRQREGADKTEREVTVGKQ
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mRNA from alignment at H-elongata_contig8978:6856..7477-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8978.16475.1 ID=mRNA_H-elongata_contig8978.16475.1|Name=mRNA_H-elongata_contig8978.16475.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=622bp|location=Sequence derived from alignment at H-elongata_contig8978:6856..7477- (Himanthalia elongata Himel1 dioecious)
GCAGCAGCATCGTTCCCGCCCCATCCGCCCCAGCATGTCAATAGCAGGTG
CGTGCGAATGGGGTAGGAGCAGTTTTGCTGTGCGCAAAACCCTTCCCTCC
GAGCTTCGACCAGAGACATATTGACAACCCTATGATGGCTAATCTTCGTT
CAAATATGTAATTATGTCTTTCTTTAATAAGCCCTGTATCACACCGCAAA
CGCACGCGGGAGGCCCTGGCTGACGATATTTACGCCCGCACTTCATTTTA
TTCACAAAACGACTCTCGTATTGCATCCTAAACTCTCCAGGACGGCAACC
TTCCCCCTCTTCGACGTCGCCGAGACTTTGCACCGACCAGGGAGTTCCTC
TGTAGCTCCGTCGCAGTCAGATAATTGCCCACTATTGGGGCCCAATAATT
TCGCTACGTGCTCGACGGGGTCAGATCCAACTAAAGACGAGGCCCATTCA
GTAGAGGCTGGAGGCTTGGGCTTACCGATCACCGGGTTTTTACGTGTCGA
GGTTGTTCCGCTCGCTGGATCAGAGGTTACATTTCGGCCGGGGGAAGCGA
GGCGGGCTGAGCTAATTCGGCAGCGGGAAGGAGCGGATAAAACGGAGAGA
GAGGTAACGGTGGGTAAGCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig8978:6856..7477-

>mRNA_H-elongata_contig8978.16475.1 ID=mRNA_H-elongata_contig8978.16475.1|Name=mRNA_H-elongata_contig8978.16475.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig8978:6856..7477- (Himanthalia elongata Himel1 dioecious)
GCAGCAGCATCGTTCCCGCCCCATCCGCCCCAGCATGTCAATAGCAGGCA
GCAGCATCGTTCCCGCCCCATCCGCCCCAGCATGTCAATAGCAGGACGGC
AACCTTCCCCCTCTTCGACGTCGCCGAGACTTTGCACCGACCAGGGAGTT
CCTCTGTAGCTCCGTCGCAGTCAGATAATTGCCCACTATTGGGGCCCAAT
AATTTCGCTACGTGCTCGACGGGGTCAGATCCAACTAAAGACGAGGCCCA
TTCAGTAGAGGCTGGAGGCTTGGGCTTACCGATCACCGGGTTTTTACGTG
TCGAGGTTGTTCCGCTCGCTGGATCAGAGGTTACATTTCGGCCGGGGGAA
GCGAGGCGGGCTGAGCTAATTCGGCAGCGGGAAGGAGCGGATAAAACGGA
GAGAGAGGTAACGGTGGGTAAGCAAGACGGCAACCTTCCCCCTCTTCGAC
GTCGCCGAGACTTTGCACCGACCAGGGAGTTCCTCTGTAGCTCCGTCGCA
GTCAGATAATTGCCCACTATTGGGGCCCAATAATTTCGCTACGTGCTCGA
CGGGGTCAGATCCAACTAAAGACGAGGCCCATTCAGTAGAGGCTGGAGGC
TTGGGCTTACCGATCACCGGGTTTTTACGTGTCGAGGTTGTTCCGCTCGC
TGGATCAGAGGTTACATTTCGGCCGGGGGAAGCGAGGCGGGCTGAGCTAA
TTCGGCAGCGGGAAGGAGCGGATAAAACGGAGAGAGAGGTAACGGTGGGT
AAGCAA
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