prot_H-elongata_contig89764.16473.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig89764.16473.1
Unique Nameprot_H-elongata_contig89764.16473.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length170
Homology
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BLAST of mRNA_H-elongata_contig89764.16473.1 vs. uniprot
Match: D8LFT0_ECTSI (TFIIH subunit (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT0_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 3.660e-47
Identity = 82/110 (74.55%), Postives = 96/110 (87.27%), Query Frame = 0 
Query:   59 GPALGAGEKVLVTADVVHKKVAGTVWFTSRRMLWRASDGKASVQRVDVPWAALKSFQCSPASEARAMIRLLRVTVGDPPVIFRFLGSSADTPREVLERAQTAIRKAMKGD 168
            GP+LGAGE+V++TA  VHKK  GTVWFTSRR LW+A+DGKA+VQRV+V WAA+KSFQCSPASEARAM+RLLRVT G PP+IFRF  +   TPREVLERAQ A+RKA+KGD
Sbjct:    5 GPSLGAGEEVVMTAHAVHKKTPGTVWFTSRRALWKAADGKAAVQRVEVAWAAVKSFQCSPASEARAMMRLLRVTEGQPPIIFRFTETPGGTPREVLERAQAAVRKALKGD 114
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BLAST of mRNA_H-elongata_contig89764.16473.1 vs. uniprot
Match: A0A6H5JXC6_9PHAE (BSD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC6_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.410e-9
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 0 
Query:  125 MIRLLRVTVGDPPVIFRFLGSSADTPREVLERAQTAIRKAMKGD 168
            M+RLLRVT G PP+IFRF  +   TPREVLERAQ A+RKA+KGD
Sbjct:    1 MMRLLRVTEGQPPIIFRFTETPGGTPREVLERAQAAVRKALKGD 44
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89764.16473.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFT0_ECTSI3.660e-4774.55TFIIH subunit (Partial) (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JXC6_9PHAE1.410e-970.45BSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013876TFIIH p62 subunit, N-terminalPFAMPF08567PH_TFIIHcoord: 76..160
e-value: 2.3E-13
score: 50.3
NoneNo IPR availableSUPERFAMILY50729PH domain-likecoord: 65..154

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89764contigH-elongata_contig89764:1178..2494 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89764.16473.1mRNA_H-elongata_contig89764.16473.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig89764 1178..2494 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig89764.16473.1 ID=prot_H-elongata_contig89764.16473.1|Name=mRNA_H-elongata_contig89764.16473.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
ADLLLDQRWFELIWLLRSEQSFKLPSKFELIRKSRSISDISRPPFGFSLQ
RTAMAGMAGPALGAGEKVLVTADVVHKKVAGTVWFTSRRMLWRASDGKAS
VQRVDVPWAALKSFQCSPASEARAMIRLLRVTVGDPPVIFRFLGSSADTP
REVLERAQTAIRKAMKGDLE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013876TFIIH_BTF_p62_N