mRNA_H-elongata_contig89730.16471.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89730.16471.1
Unique NamemRNA_H-elongata_contig89730.16471.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig89730.16471.1 vs. uniprot
Match: D8LFI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI6_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 1.350e-38
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 1 
Query:    1 MVDNKINKFRHVILEILHRLPNNEVLKPYVQELLQLVMNVVDSDNEDNAIQGLRVVFDLQKNYRPQLESEVPRFLQV 231
            MVDNKINKFRHVILEILHRLPNNEVLKP+VQELL LVM VVD+DNEDNAIQGLRVVFDLQKNYRPQLESEVPRFLQ+
Sbjct:   60 MVDNKINKFRHVILEILHRLPNNEVLKPHVQELLLLVMKVVDTDNEDNAIQGLRVVFDLQKNYRPQLESEVPRFLQM 136
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BLAST of mRNA_H-elongata_contig89730.16471.1 vs. uniprot
Match: A0A1X6P4I8_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P4I8_PORUM)

HSP 1 Score: 93.2 bits (230), Expect = 3.060e-20
Identity = 40/75 (53.33%), Postives = 61/75 (81.33%), Query Frame = 1 
Query:    4 VDNKINKFRHVILEILHRLPNNEVLKPYVQELLQLVMNVVDSDNEDNAIQGLRVVFDLQKNYRPQLESEVPRFLQ 228
            VDN+++K R+V+LE+L+RLP+ + L+PYV +LL L + ++ +DNE+NA+  LR++FDL KN+RP LE+ VP FLQ
Sbjct:   67 VDNEVHKARNVVLEVLNRLPHIDALRPYVPDLLTLALRILVTDNEENAVTALRIIFDLHKNFRPHLEAHVPDFLQ 141
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BLAST of mRNA_H-elongata_contig89730.16471.1 vs. uniprot
Match: F4PK69_CAVFA (Protein kinase n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PK69_CAVFA)

HSP 1 Score: 91.7 bits (226), Expect = 1.090e-19
Identity = 44/71 (61.97%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:   19 NKFRHVILEILHRLPNNEVLKPYVQELLQLVMNVVDSDNEDNAIQGLRVVFDLQKNYRPQLESEVPRFLQV 231
            +K R+ ILEIL++LPNNE+LKP+VQ LLQL M +++ DNEDNAI  LR++ +L KNYRP LESEV  FL +
Sbjct:   74 HKIRNTILEILNKLPNNELLKPHVQNLLQLCMYLLEVDNEDNAIICLRIIMELHKNYRPNLESEVQPFLNI 144
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BLAST of mRNA_H-elongata_contig89730.16471.1 vs. uniprot
Match: A0A7S4BIW3_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BIW3_CHRCT)

HSP 1 Score: 87.0 bits (214), Expect = 1.240e-19
Identity = 40/77 (51.95%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:   22 KFRHVILEILHRLPNNEVLKPYVQELLQLVMNVVDSDNEDNAIQGLRVVFDLQKNYRPQLESEVPRFLQ-VKKFLAG 249
            K R+++LE+L+RLPNN+ L+P+VQ +L L M ++++DNE+NA+  LR++FDL KN+RP LESEV  FL  V++   G
Sbjct:   72 KIRNLLLEVLNRLPNNDTLRPHVQRMLSLCMKLLETDNEENAVICLRIIFDLHKNFRPTLESEVQPFLDFVQRIYQG 148
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BLAST of mRNA_H-elongata_contig89730.16471.1 vs. uniprot
Match: A0A4D8ZWG2_SALSN (Uncharacterized protein n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZWG2_SALSN)

HSP 1 Score: 90.1 bits (222), Expect = 3.770e-19
Identity = 40/74 (54.05%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:    4 VDNKINKFRHVILEILHRLPNNEVLKPYVQELLQLVMNVVDSDNEDNAIQGLRVVFDLQKNYRPQLESEVPRFL 225
            VDN+ +K R++I+EIL+RLP++EVL+P+VQELL++ M+V+ +DNE+N +  +R++FDL +N+RP LE+EV  FL
Sbjct:   67 VDNQEHKLRNIIIEILNRLPHSEVLRPFVQELLKVAMHVLTTDNEENGLICIRIIFDLLRNFRPSLETEVQPFL 140
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BLAST of mRNA_H-elongata_contig89730.16471.1 vs. uniprot
Match: A0A4D8Z436_SALSN (Uncharacterized protein n=4 Tax=Salvia TaxID=21880 RepID=A0A4D8Z436_SALSN)

HSP 1 Score: 90.1 bits (222), Expect = 3.770e-19
Identity = 40/74 (54.05%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:    4 VDNKINKFRHVILEILHRLPNNEVLKPYVQELLQLVMNVVDSDNEDNAIQGLRVVFDLQKNYRPQLESEVPRFL 225
            VDN+ +K R++I+EIL+RLP++EVL+P+VQELL++ M+V+ +DNE+N +  +R++FDL +N+RP LE+EV  FL
Sbjct:   67 VDNQEHKLRNIIIEILNRLPHSEVLRPFVQELLKVAMHVLTTDNEENGLICIRIIFDLLRNFRPSLETEVQPFL 140
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BLAST of mRNA_H-elongata_contig89730.16471.1 vs. uniprot
Match: A0A8J6CBB9_DIALT (FAT domain-containing protein n=4 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CBB9_DIALT)

HSP 1 Score: 90.1 bits (222), Expect = 3.780e-19
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:    4 VDNKINKFRHVILEILHRLPNNEVLKPYVQELLQLVMNVVDSDNEDNAIQGLRVVFDLQKNYRPQLESEVPRFL 225
            VD    K R+ +LEIL+RLPNNEVL+P+V  +LQL M ++D DNE+NA+  LR++FDL KN+RP LE EV  FL
Sbjct:   65 VDGPAQKTRNTLLEILNRLPNNEVLRPHVHVVLQLCMALLDKDNEENAVLCLRIIFDLHKNFRPSLEKEVQPFL 138
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BLAST of mRNA_H-elongata_contig89730.16471.1 vs. uniprot
Match: F0YHH3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHH3_AURAN)

HSP 1 Score: 90.1 bits (222), Expect = 3.780e-19
Identity = 42/75 (56.00%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:    7 DNKINKFRHVILEILHRLPNNEVLKPYVQELLQLVMNVVDSDNEDNAIQGLRVVFDLQKNYRPQLESEVPRFLQV 231
            D    +FRHVILEIL+RLPNNEVL+PY  ELL++    +  D+E+NA+  LR++FDL KN+RP LE EV  FL +
Sbjct:  733 DETGTRFRHVILEILNRLPNNEVLRPYAPELLRVATETLSRDSEENALTCLRIIFDLHKNFRPALEGEVQSFLDL 807
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BLAST of mRNA_H-elongata_contig89730.16471.1 vs. uniprot
Match: W1NW31_AMBTC (Uncharacterized protein n=3 Tax=Amborella trichopoda TaxID=13333 RepID=W1NW31_AMBTC)

HSP 1 Score: 84.0 bits (206), Expect = 5.640e-19
Identity = 39/73 (53.42%), Postives = 61/73 (83.56%), Query Frame = 1 
Query:    7 DNKINKFRHVILEILHRLPNNEVLKPYVQELLQLVMNVVDSDNEDNAIQGLRVVFDLQKNYRPQLESEVPRFL 225
            D+  +K R+VI+EIL+RLP++EVL+P+VQ+LL++ M+V+ +DNE+N +  LR++FDL +N+RP LE+EV  FL
Sbjct:   48 DSIEHKVRNVIVEILNRLPHSEVLRPFVQDLLKVAMHVLTTDNEENGLICLRIIFDLLRNFRPTLEAEVQPFL 120
[Close]
BLAST of mRNA_H-elongata_contig89730.16471.1 vs. uniprot
Match: A0A7S0EER1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EER1_9EUKA)

HSP 1 Score: 85.9 bits (211), Expect = 6.970e-19
Identity = 40/77 (51.95%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:   22 KFRHVILEILHRLPNNEVLKPYVQELLQLVMNVVDSDNEDNAIQGLRVVFDLQKNYRPQLESEVPRFLQ-VKKFLAG 249
            K R+++LE+L+RLPNNE L+P+VQ +L L M ++++DNE+NA+  LR++FDL KN+RP LE EV  FL  V++   G
Sbjct:   72 KIRNMLLEVLNRLPNNETLRPHVQAMLSLCMKLLETDNEENAVICLRIIFDLHKNFRPTLEREVQPFLDFVQRIYQG 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89730.16471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFI6_ECTSI1.350e-3893.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1X6P4I8_PORUM3.060e-2053.33Uncharacterized protein (Fragment) n=1 Tax=Porphyr... [more]
F4PK69_CAVFA1.090e-1961.97Protein kinase n=1 Tax=Cavenderia fasciculata (str... [more]
A0A7S4BIW3_CHRCT1.240e-1951.95Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A4D8ZWG2_SALSN3.770e-1954.05Uncharacterized protein n=1 Tax=Salvia splendens T... [more]
A0A4D8Z436_SALSN3.770e-1954.05Uncharacterized protein n=4 Tax=Salvia TaxID=21880... [more]
A0A8J6CBB9_DIALT3.780e-1958.11FAT domain-containing protein n=4 Tax=Diacronema l... [more]
F0YHH3_AURAN3.780e-1956.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
W1NW31_AMBTC5.640e-1953.42Uncharacterized protein n=3 Tax=Amborella trichopo... [more]
A0A7S0EER1_9EUKA6.970e-1951.95Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89730contigH-elongata_contig89730:466..723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.2
Seed ortholog evalue1.4e-32
Seed eggNOG ortholog2880.D8LFI6
KEGG koko:K08874
KEGG Pathwayko05166,map05166
GOsGO:0000123,GO:0000166,GO:0003674,GO:0003712,GO:0003824,GO:0004402,GO:0004672,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006464,GO:0006468,GO:0006473,GO:0006475,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008080,GO:0008144,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010556,GO:0016043,GO:0016301,GO:0016310,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016773,GO:0017076,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0030554,GO:0031248,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034212,GO:0034641,GO:0035267,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0060255,GO:0061733,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140096,GO:0140110,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1903506,GO:1990234,GO:2001141
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0889@2759
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size258
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931297.8552084-CDS-H-elongata_contig89730:465..7231622931297.8552084-CDS-H-elongata_contig89730:465..723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89730 466..723 -
1691679778.6365013-CDS-H-elongata_contig89730:465..7231691679778.6365013-CDS-H-elongata_contig89730:465..723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89730 466..723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89730.16471.1prot_H-elongata_contig89730.16471.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89730 466..723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89730.16471.1

>prot_H-elongata_contig89730.16471.1 ID=prot_H-elongata_contig89730.16471.1|Name=mRNA_H-elongata_contig89730.16471.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MVDNKINKFRHVILEILHRLPNNEVLKPYVQELLQLVMNVVDSDNEDNAI
QGLRVVFDLQKNYRPQLESEVPRFLQVKKFLAGSS*
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mRNA from alignment at H-elongata_contig89730:466..723-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89730.16471.1 ID=mRNA_H-elongata_contig89730.16471.1|Name=mRNA_H-elongata_contig89730.16471.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at H-elongata_contig89730:466..723- (Himanthalia elongata Himel1 dioecious)
ATGGTCGACAACAAAATCAACAAATTCAGGCACGTGATATTGGAGATCCT
GCATCGCCTTCCCAACAACGAGGTTCTAAAGCCGTACGTCCAGGAACTTC
TCCAGTTGGTAATGAACGTGGTCGACTCTGACAACGAGGATAACGCCATC
CAGGGGCTACGCGTTGTGTTTGACCTACAGAAGAACTACCGCCCGCAGCT
GGAGTCAGAGGTGCCTCGCTTCTTGCAGGTGAAGAAGTTCCTAGCAGGGA
GTTCGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig89730:466..723-

>mRNA_H-elongata_contig89730.16471.1 ID=mRNA_H-elongata_contig89730.16471.1|Name=mRNA_H-elongata_contig89730.16471.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig89730:466..723- (Himanthalia elongata Himel1 dioecious)
ATGGTCGACAACAAAATCAACAAATTCAGGCACGTGATATTGGAGATCCT
GCATCGCCTTCCCAACAACGAGGTTCTAAAGCCGTACGTCCAGGAACTTC
TCCAGTTGGTAATGAACGTGGTCGACTCTGACAACGAGGATAACGCCATC
CAGGGGCTACGCGTTGTGTTTGACCTACAGAAGAACTACCGCCCGCAGCT
GGAGTCAGAGGTGCCTCGCTTCTTGCAGGTGAAGAAGTTCCTAGCAGGGA
GTTCGTAGATGGTCGACAACAAAATCAACAAATTCAGGCACGTGATATTG
GAGATCCTGCATCGCCTTCCCAACAACGAGGTTCTAAAGCCGTACGTCCA
GGAACTTCTCCAGTTGGTAATGAACGTGGTCGACTCTGACAACGAGGATA
ACGCCATCCAGGGGCTACGCGTTGTGTTTGACCTACAGAAGAACTACCGC
CCGCAGCTGGAGTCAGAGGTGCCTCGCTTCTTGCAGGTGAAGAAGTTCCT
AGCAGGGAGTTCGTAG
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