mRNA_H-elongata_contig8971.16468.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8971.16468.1
Unique NamemRNA_H-elongata_contig8971.16468.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8971.16468.1 vs. uniprot
Match: A0A6H5KVH9_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVH9_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 1.340e-77
Identity = 132/200 (66.00%), Postives = 162/200 (81.00%), Query Frame = 1
Query:   37 TGDVKYWDSNYGKTLDELEAFISTAEKGSGEARNEALESAANGFRRVTGMKRNYHLEIKLMTEPGSKAHYTTEKSQKDARLTALQTRLDAEQARSGQSKRDELFGGRRDIETGNSGGGAQTAESKLDEADHYQDKTEEAYKNMIGVLQETEQTADGTALELANQREQMNAITQQAIEIDSMLTRADRLVKVFSKRMMTDK 636
            +GDVKYWD++YGKTLD+L+ FI+T E GSG+AR +A+  A+   +R+ GM+R+Y+LEIKL+ +P  KAHY  EKSQKD+R   LQ+R DA +A SG S RDELFGGRRD+E+G + G  ++AE+KL EAD YQDKTE AYKNMIGVLQETE TAD TA+EL NQREQ+  IT+   EIDS+LTRADRLVKVFSKRMMTDK
Sbjct:    3 SGDVKYWDTSYGKTLDQLDGFIATMESGSGDAREDAMSEASRSLKRLAGMRRSYNLEIKLIKDPNMKAHYNLEKSQKDSRYATLQSRFDAAKA-SGDSTRDELFGGRRDVESGEAQG--KSAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDK 199          
BLAST of mRNA_H-elongata_contig8971.16468.1 vs. uniprot
Match: A0A835Z1V1_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V1_9STRA)

HSP 1 Score: 152 bits (385), Expect = 7.800e-41
Identity = 93/201 (46.27%), Postives = 131/201 (65.17%), Query Frame = 1
Query:   40 GDVKYWDSNYGKTLDELEAFISTAEKGSGEARNEA-LESAANGFRRVTGMKRNYHLEIKLMTEPGSKAHYTTEKSQKDARLTALQTRLDAEQARSGQSKRDELFGGRRDIETGNSGGGAQTAESKLDEADHYQDKTEEAYKNMIGVLQETEQTADGTALELANQREQMNAITQQAIEIDSMLTRADRLVKVFSKRMMTDKV 639
            GDVKYWD++YGK LDEL   +  A KG+  A  EA + +A    RR+ GMKR+Y+LEIKLM +   KA Y  EK+ KDA+LT L+ +L+  + +   S +  LF GR   E        +TA+ KLD+A+  Q+KTE  YKN+I VL++TE+    TA  L  QR Q++ IT+  +E+D MLTRA++L+ VFS+R+ TDK+
Sbjct:    2 GDVKYWDTSYGKALDELSDQVK-AVKGASAAEKEAKIATATQTVRRLQGMKRSYNLEIKLMRDATQKASYQEEKNAKDAKLTELEAQLEEAKNKPAGSDKVSLFSGRAAEEPK-----VKTADQKLDQAEIIQNKTEAKYKNIITVLEQTEEVGSATAATLQEQRAQISEITENVMEMDGMLTRANKLIMVFSRRLATDKM 196          
BLAST of mRNA_H-elongata_contig8971.16468.1 vs. uniprot
Match: A0A7S2V573_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V573_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.840e-14
Identity = 61/209 (29.19%), Postives = 105/209 (50.24%), Query Frame = 1
Query:   46 VKYWDSNYGKTLDELEAFISTAEKGSGEARNEALESAANGFRRVTGMKRNYHLEIKLMTEPGSKAHYTTEKSQKDARLTALQTRLDAEQARSGQSKRDELFGGRRDIETGNSGGGAQTAESKLDEADHYQDKTEEAYKNMIGVLQETEQTADGTALELANQREQMNAITQQAIEIDSMLTRADRLVKVFSKRMMTDK-VRFIILIPKCI 669
            ++YWD      +D+ E      +  + E   EA +   +  +   G+K+++  E++L+ +   + HY  +  + + R++AL  RL+   +R    K   + G ++    G  G      ++ L +A+  QD  E+AY      L E  Q A  T  EL NQRE++  IT+ A  ID +LTRADRL++ F +RM TD+ ++    I  C+
Sbjct:    1 MEYWDERINSLIDQGEREAEKLDMDN-ETAMEACQEIEHCLQSAKGVKQSFTTELRLLGDKVEEQHYKMKLRRYEERMSALTERLNG--SREAIEKEHLMRGAQQRRGGGGFGDSDDPNDAMLGKAEKLQDDIEDAYGRAENDLDEIRQLAPETLAELRNQREKIQDITETAERIDDLLTRADRLLRTFGRRMATDRLIQVFFFINACL 206          
BLAST of mRNA_H-elongata_contig8971.16468.1 vs. uniprot
Match: W7TW41_9STRA (Soluble nsf attachment protein receptor n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TW41_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.070e-13
Identity = 59/207 (28.50%), Postives = 110/207 (53.14%), Query Frame = 1
Query:   43 DVKYWDSNYGKTLDELEAFISTAEKGSGEARNEALESAANGFRRVTGMKRNYHLEIKLMTEPGSKAHYTTEKSQK-DARLTALQTRLDAEQARSGQSKRDELFGGRRDIETGNSGGGAQTAESKLDEADHYQDKTEEAYKNMIGVLQETEQTADGTALELANQREQMNAITQQAIEIDSMLTRADRLVKVFSKRMMTDK-VRFIILI 657
            D++YWD      L ELE  I   +   G  +   +  +    +RV  +K+ Y+ E+++  +   + H   EK +  D R+ AL+T L  + A++  +K+  LF G +  +   +     T ++ L EA   QDKTE + ++ +G+++ ++Q    T  E+  Q+EQ+  IT     ++  LTRAD+L++ F +R+ TDK ++F  ++
Sbjct:    3 DIEYWDGELSSKLAELEQTIGNLKSMRGGDKEAGIAKSEATLKRVREVKKGYNYEMRMSLKNDPRRHEYAEKLKAVDERIAALETEL--KWAKTEANKKS-LFKGSKGADGSGTLNENATNDTYLTEAKKIQDKTEASLQSALGMVEASKQVGANTVDEVNRQKEQIAEITDTVEAMEDGLTRADKLIRAFGRRIATDKFIQFFFVL 206          
BLAST of mRNA_H-elongata_contig8971.16468.1 vs. uniprot
Match: A0A7S4A3K9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3K9_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 9.140e-13
Identity = 54/199 (27.14%), Postives = 106/199 (53.27%), Query Frame = 1
Query:   43 DVKYWDSNYGKTLDELEAFISTAEKGSGEARNEALESAANGFRRVTGMKRNYHLEIKLMTEPGSKAHYTTEKSQKDARLTALQTRLDAEQARSGQSKRDELFGGRRDIETGNSGGGAQTAESKLDEADHYQDKTEEAYKNMIGVLQETEQTADGTALELANQREQMNAITQQAIEIDSMLTRADRLVKVFSKRMMTDKV 639
            D+ YW  +Y  ++D+ +  +++      + R   +++A    +R  G+K++Y LE++L+ +   K +Y     + D R   L+ R++  + R+   +R  L       ET  + G  +  +  LD+A   QDKTE   +    +++ +++    T  EL  Q++Q+  ++   + I+  L+RADRL++ F+KRMMTDK+
Sbjct:   62 DIDYWSDSYRSSIDDADRLVTSLGACEPDERLSIIDAADAKLKRAGGIKKSYKLELRLLRDRELKRNYEESLRELDDRRDELKRRVEEHRERT---ERSTLL-----QETPAAFGEHKGNDYYLDKAHSLQDKTENTLERTTQMIEASKEVGASTLSELERQQDQIKDVSADIMLIEDNLSRADRLIRNFTKRMMTDKL 252          
BLAST of mRNA_H-elongata_contig8971.16468.1 vs. uniprot
Match: F0YKX2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKX2_AURAN)

HSP 1 Score: 73.9 bits (180), Expect = 1.340e-10
Identity = 58/204 (28.43%), Postives = 105/204 (51.47%), Query Frame = 1
Query:   43 DVKYWDSNYGKTLDELEAFISTAEKGSGEARNEALESAANGFRRVTGMKRNYHLEIKLMTEPGSKAHYTTEKSQKDARLTALQTRLDAEQARSGQSKRDELFGGRRDIETGNSGGGAQTAESKLDEADHYQDKTEEAYKNMIGVLQETEQTADGTALE-----LANQREQMNAITQQAIEIDSMLTRADRLVKVFSKRMMTDKV 639
            DV+YW  +Y   +DEL   +S+  + SG    +          R   +K++Y LE++L+ +   K  +  +  + D R   L+  L+ E  R G+++R+ L     D        G    +S L++A   QD+T++A    I +++ +++  + T  E     L +Q+EQ+  I+   + I+  L RAD+L++ F+KRMMTDK+
Sbjct:    4 DVEYWSDSYAGAVDELAVRVSSIRELSGCDFRDIAAECDTKLSRAKSIKKSYCLEMRLLRDQKIKGLHNCKLKELDRRCAELE--LEIEFVRGGRARRELLTSSSVDH------AGCDDNKSCLNDAAILQDQTQDALSRTINLVEASKEVGNSTINEHTILLLEHQQEQVKDISTDVMLIEDNLLRADKLIRNFTKRMMTDKL 199          
BLAST of mRNA_H-elongata_contig8971.16468.1 vs. uniprot
Match: A0A485L062_9STRA (Aste57867_13425 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L062_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.300e-10
Identity = 56/203 (27.59%), Postives = 108/203 (53.20%), Query Frame = 1
Query:   43 DVKYWDSNYGKTLDELEAFISTAEKGSGEARNEALESAANGFRRVTGMKRNYHLEIKLMTEPGSKAHYTTEKSQKDARLTALQTRLDAEQARSGQSKRDELFGGRR----DIETGNSGGGAQTAESKLDEADHYQDKTEEAYKNMIGVLQETEQTADGTALELANQREQMNAITQQAIEIDSMLTRADRLVKVFSKRMMTDKV 639
            ++ Y+D +    L++L+  ++   K     R+E L  A    + V  +K+ + L ++ +T+      Y  +     AR+  L TR + + A+S +++R+ LFG  +       TGN+          L++A   Q KTE + KN   +++ +++ A  T   L  QR Q+NAIT++ + +D  +TRA++L++ F++RM TD++
Sbjct:    3 EIAYYDGDLSDALEKLDQIMAKLAKAPPGVRSEVLAEAEKKLKEVIDLKKGFSLALRQVTDREEIKTYREKNDVYAARVEEL-TR-EVKWAKS-ETERNGLFGDAKAKASTAPTGNA--------DMLNKAQELQTKTESSLKNTQKMIESSKEVALATGETLREQRNQLNAITEEVMRMDDGITRANKLMRTFTRRMATDRL 194          
BLAST of mRNA_H-elongata_contig8971.16468.1 vs. uniprot
Match: A0A067BTK0_SAPPC (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BTK0_SAPPC)

HSP 1 Score: 66.2 bits (160), Expect = 8.140e-9
Identity = 57/203 (28.08%), Postives = 102/203 (50.25%), Query Frame = 1
Query:   43 DVKYWDSNYGKTLDELEAFISTAEKGSGEARNEALESAANGFRRVTGMKRNYHLEIKLMTEPGSKAHYTTEKSQKDARLTALQTRLDAEQARSGQSKRDELFGGRR----DIETGNSGGGAQTAESKLDEADHYQDKTEEAYKNMIGVLQETEQTADGTALELANQREQMNAITQQAIEIDSMLTRADRLVKVFSKRMMTDKV 639
            ++ Y+D +  + L  L+  ++   K     R E L  A    + V  +K+ Y L ++ +T+      +  +     AR+  L TR + + A+S +++R+ LFG  +     + TGN           L +A   Q KTE + KN   +++ ++  A  T   L  QR Q+NAIT++ + +D  L RA++L++ F +RM TD+V
Sbjct:    3 EINYYDGDLSEALSTLDGIMARLAKAPPAVRGEVLAEAEKKLKEVIDLKKGYTLALRQVTDREEIKVFREKNDVYAARVEEL-TR-EVKWAKS-ETERNGLFGDAKVNAAKMPTGN--------REMLGKAQEIQTKTEMSLKNTQKMVEASKDVALATGEVLREQRNQINAITEEVMRMDDGLARANKLLRTFGRRMATDRV 194          
BLAST of mRNA_H-elongata_contig8971.16468.1 vs. uniprot
Match: A0A6G0W6N5_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6N5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.210e-8
Identity = 54/199 (27.14%), Postives = 106/199 (53.27%), Query Frame = 1
Query:   43 DVKYWDSNYGKTLDELEAFISTAEKGSGEARNEALESAANGFRRVTGMKRNYHLEIKLMTEPGSKAHYTTEKSQKDARLTALQTRLDAEQARSGQSKRDELFGGRRDIETGNSGGGAQTAESKLDEADHYQDKTEEAYKNMIGVLQETEQTADGTALELANQREQMNAITQQAIEIDSMLTRADRLVKVFSKRMMTDKV 639
            ++ Y+D +    L +L+  ++   K     ++E L  A    + V  +K+ + L ++ +T+      Y  +     AR+  L TR + + A+S +++R+ LFG   D +   S      AE  L++A   Q KTE + KN   +++ +++ A  T   L  QR Q+NAIT++ + +D  + RA++L++ F++RM +D++
Sbjct:    3 EIAYYDGDLSDALTKLDQIMAKLAKAPPGVKSEVLAEAEKKLKEVIDLKKGFSLALRQVTDREDLKTYREKNDVYTARVEEL-TR-EVKWAKS-ETERNGLFG---DAKAKASKAPTGNAEM-LNKAQELQTKTESSLKNTQKMVESSKEVALATGEVLREQRNQLNAITEEVMRMDDGIARANKLMRTFTRRMASDRL 194          
BLAST of mRNA_H-elongata_contig8971.16468.1 vs. uniprot
Match: A0A024TLV5_9STRA (t-SNARE coiled-coil homology domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLV5_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.960e-8
Identity = 54/203 (26.60%), Postives = 105/203 (51.72%), Query Frame = 1
Query:   43 DVKYWDSNYGKTLDELEAFISTAEKGSGEARNEALESAANGFRRVTGMKRNYHLEIKLMTEPGSKAHYTTEKSQKDARLTALQTRLDAEQARSGQSKRDELFGGRR----DIETGNSGGGAQTAESKLDEADHYQDKTEEAYKNMIGVLQETEQTADGTALELANQREQMNAITQQAIEIDSMLTRADRLVKVFSKRMMTDKV 639
            ++ Y+D +    L +L   ++   K     ++E L  A    + V  +K+ + L ++ +T+      Y  +     AR+  L TR + + A+S ++ R+ LFG  +     + TGN+          L++A   Q KTE + KN   +++ +++ A  T   L  QR Q+NAIT++ + +D  + RA++L++ F++RM TD++
Sbjct:    3 EIAYYDGDLSDALTKLNQIMAKLAKAPPGIKSEVLVEAEKKLKEVIDLKKGFSLALRQVTDREEIKSYREKNDVYAARVEEL-TR-EVKWAKS-ETDRNGLFGDAKAKASKVPTGNT--------DLLNKAQELQGKTEVSLKNTQKMIENSKEVALATGETLREQRNQLNAITEEVMRMDDGVARANKLMRTFTRRMATDRL 194          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8971.16468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KVH9_9PHAE1.340e-7766.00t-SNARE coiled-coil homology domain-containing pro... [more]
A0A835Z1V1_9STRA7.800e-4146.27Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A7S2V573_9STRA3.840e-1429.19Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TW41_9STRA2.070e-1328.50Soluble nsf attachment protein receptor n=2 Tax=Mo... [more]
A0A7S4A3K9_9STRA9.140e-1327.14Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
F0YKX2_AURAN1.340e-1028.43Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A485L062_9STRA2.300e-1027.59Aste57867_13425 protein n=1 Tax=Aphanomyces stella... [more]
A0A067BTK0_SAPPC8.140e-928.08t-SNARE coiled-coil homology domain-containing pro... [more]
A0A6G0W6N5_9STRA2.210e-827.14t-SNARE coiled-coil homology domain-containing pro... [more]
A0A024TLV5_9STRA2.960e-826.60t-SNARE coiled-coil homology domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8971contigH-elongata_contig8971:6404..9642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue4.4e-13
Seed eggNOG ortholog2850.Phatr54855
EggNOG OGs29I5R@1,2RRCR@2759,2XCW0@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-20_002310.1
Exons5
Model size1075
Cds size777
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931297.6027484-UTR-H-elongata_contig8971:6403..64151622931297.6027484-UTR-H-elongata_contig8971:6403..6415Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8971 6404..6415 +
1691679778.5364828-UTR-H-elongata_contig8971:6403..64151691679778.5364828-UTR-H-elongata_contig8971:6403..6415Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8971 6404..6415 +
1622931297.6996107-UTR-H-elongata_contig8971:9356..96421622931297.6996107-UTR-H-elongata_contig8971:9356..9642Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8971 9357..9642 +
1691679778.601275-UTR-H-elongata_contig8971:9356..96421691679778.601275-UTR-H-elongata_contig8971:9356..9642Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8971 9357..9642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931297.6242003-CDS-H-elongata_contig8971:6415..64781622931297.6242003-CDS-H-elongata_contig8971:6415..6478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8971 6416..6478 +
1691679778.548025-CDS-H-elongata_contig8971:6415..64781691679778.548025-CDS-H-elongata_contig8971:6415..6478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8971 6416..6478 +
1622931297.6383274-CDS-H-elongata_contig8971:7275..74371622931297.6383274-CDS-H-elongata_contig8971:7275..7437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8971 7276..7437 +
1691679778.5588362-CDS-H-elongata_contig8971:7275..74371691679778.5588362-CDS-H-elongata_contig8971:7275..7437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8971 7276..7437 +
1622931297.65185-CDS-H-elongata_contig8971:7642..77171622931297.65185-CDS-H-elongata_contig8971:7642..7717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8971 7643..7717 +
1691679778.5696986-CDS-H-elongata_contig8971:7642..77171691679778.5696986-CDS-H-elongata_contig8971:7642..7717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8971 7643..7717 +
1622931297.6674027-CDS-H-elongata_contig8971:8123..82701622931297.6674027-CDS-H-elongata_contig8971:8123..8270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8971 8124..8270 +
1691679778.5800464-CDS-H-elongata_contig8971:8123..82701691679778.5800464-CDS-H-elongata_contig8971:8123..8270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8971 8124..8270 +
1622931297.683435-CDS-H-elongata_contig8971:9026..93561622931297.683435-CDS-H-elongata_contig8971:9026..9356Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8971 9027..9356 +
1691679778.5899549-CDS-H-elongata_contig8971:9026..93561691679778.5899549-CDS-H-elongata_contig8971:9026..9356Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8971 9027..9356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8971.16468.1prot_H-elongata_contig8971.16468.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8971 6416..9356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8971.16468.1

>prot_H-elongata_contig8971.16468.1 ID=prot_H-elongata_contig8971.16468.1|Name=mRNA_H-elongata_contig8971.16468.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=259bp
MARSGGSNTGDVKYWDSNYGKTLDELEAFISTAEKGSGEARNEALESAAN
GFRRVTGMKRNYHLEIKLMTEPGSKAHYTTEKSQKDARLTALQTRLDAEQ
ARSGQSKRDELFGGRRDIETGNSGGGAQTAESKLDEADHYQDKTEEAYKN
MIGVLQETEQTADGTALELANQREQMNAITQQAIEIDSMLTRADRLVKVF
SKRMMTDKVRFIILIPKCIRHSPGCNYSPARARMCSRLMVYFPWCIVTCW
PAPWTAHK*
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mRNA from alignment at H-elongata_contig8971:6404..9642+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8971.16468.1 ID=mRNA_H-elongata_contig8971.16468.1|Name=mRNA_H-elongata_contig8971.16468.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3239bp|location=Sequence derived from alignment at H-elongata_contig8971:6404..9642+ (Himanthalia elongata Himel1 dioecious)
CCAGAGACAGCCATGGCGAGAAGCGGAGGTAGTAACACTGGAGACGTCAA GTACTGGGACTCAAACTATGGCAAGGTGAGGACCAGACGGCAAGCGCCCA AGGATTTGGCAGTGATGTTCGTGACGAGTTGCTCTTCGACCTCCCACTAC TCTCGTAATATATCCGTTCGAAGAAAAGATTTAAGCTTCAGCCACGTCTT GGCTTCGTGGATTTATCTCGGCTAGTCTATAACGGTCACGAGGAATGATT CTCTAGCGTGAGCAAGACACGGAATGCGGCGTCTCAGCTCAAACGAATCG TCGAAAAAAGTAACAGCGCGCTGTTACGCAAGACTTTTTGGAGGCTTTGC GAGTGGATGTGCCGAGGTAACGCCACCTTTCACCCGTGGGTGTATCGCCT AAGCGACGCGCGTGGTACATTGTATGGCACAACCCAACCTTTACAAAATT ACTGCAGAACCATACCGGTAGGGATAGCTGCCCTACCTACCACGTCGACC GGTGCAACCATGTCGAAAGGGGTTGTACTATTTCAGGCGTGGTGGACCTG GTATACCATGTATTTCCGCTCCCTCGCTCGCTCGTCCGTCACACGATCTG CGCTCGCAATCCGTAGTCACGCGGAGGTAGAGGCGCCAACAGCATAAGTA AAAACTGAAACTGCGTTCGCCGCGTGAAGTTCTGATTTCGCGGACAAGCA ACAGTAGGTGTTATCGCGATACCAATGATAGTTCTCGTCCTACCCTGAGT TCCTCTCTCTGGAAAGCGTCCAGTCAGAGCTCCCCTCTCTCTGAGTGGGA ACGAACAAAGCCGCTGTCGCATTATGTACTGTTGTCGTTGACTTGAACAC GGCTGGACCGTTCGGGGGGTAGACCCTGGATGAACTGGAGGCGTTCATCT CGACAGCGGAGAAAGGATCGGGAGAAGCGCGCAACGAAGCCCTGGAGAGC GCGGCCAACGGCTTTAGACGAGTGACGGGCATGAAGCGGAACTACCATCT AGAGATCAAGCTCATGACCGAACCCGGTTCTAAGGTAATTCCTGTCCGCG AGACCGATCTGAAAGCATAAATTGTTGAACTCTTGGAAGAGTTCGCGGGC GCACCTTATATACGGGCCGCCACAAGAGCCGGATATGTACATTAGTCTGG CAGTTGTGACGCCCCCTCCTCCCCCACGCTTCCAGCCTCGCCGGCATAAC GCCTTCCACCATGCCCCGTTTGGAAACAAAATTCAACAGGCGCATTACAC CACAGAGAAGTCACAAAAGGACGCGCGCTTAACGGCACTGCAGACGAGAC TCGACGCTGAACAGGTGCAATCTAAAGTGATGTTTTTTTGTTTTTATTTT TATTTTTTTGGTCCTCGGGCTGTCGGCAAAAGTAATGTGCATCGGCTATA GGGCGCTCTTCAAAGGGCGTAAGAGTAGCAAGTCATTCGGAAACCTCTAG AATATTTACGACTTGTCAACGTGGGTCGGTCGAGCCTCTAAAAGTGCACC GCATGACGAAGACAAGGTCGGCCTGACCTCATTCACTACAAGACGTGATG GGTGAAGAGACAGGAACCTCCCATCATTTGAGCCCCGACGGCCCACGGTG AAGGGCCGACACGGTTAGTCTTCAGTGTGAGGCAACGACGATCCTCGTAG CGAGATCCTTCTATAATAGCGGAAATCATAAGCGTGTCCTTTGGGCGGCG ATTCTGTGGTAACGCCGCAGGCGAGAAGCGGACAGAGCAAGCGGGATGAA CTCTTCGGCGGGCGAAGAGACATCGAGACGGGAAATTCTGGTGGCGGGGC TCAGACAGCAGAATCGAAGCTGGACGAGGCGGATCACTACCAGGACAAGA CGGAGGAAGCATACAAGGCGAGAGAGCCGAGCGCACGTGTGTGTGTGTGT GTGTATGTGTGTGTGTCTTGGTTCGGGTTGTGTCCGTGAGCGCCCTTCGA CTGTGCGCATACATCCACTCTTCTAAAGGGGCAGTGTGAGCTTTGAATCA TGCTCGGCATTGGTGAGCGGTGAGCGTCGGCGACGCAACCGGTATAATAT AACTATCTTGGTAGCGAAGCTCGCAGCGGTGGTGTGAGGGAGTCGTACGA AATTCATAGCAGTTTCCTGTAGCATGCCTTCAGCGTCTTAGTCCTTCCAC CGTTACGACAAACTATTCATAGGGCACAGAACAAACCAGCGTGTTCAAGA AAATACGCCAGACAGGCACATTCGCGTTACGTGCGTGGGGTACCGGTAGT TGGTACGATGGAAATCGCTACAATGTACTGTCTGTAGCTGTTGTCCAGTT GGCGGCGGTCGTCGTACGAGCACTAAGCTTGGTTCGCGACGTGTGGTGCG CGCGTCGCGCAACACATCCTAACAAGCCGTAGGGGCCACCTTCCTTAATA AAGAGCCACAAATGCGTTCGCAGCAAATGACACACGACAGGTGTGCACGC CTGGTCCAGTAGACACTGCCGTTCGTAGGTTCCGAGTCTTAATTTACGCC TAACCTCCCTGCCGCATATGTCGACGTTCTGTGACACTCATCTTTGGTTT ATGTGCGGTCGCTTCTTCCCTGTGCTGTGCTTTGGACTGTATTATCCGTC GACGGGTGTACGCGGAAATGCAGAACATGATCGGAGTGCTTCAAGAGACT GAGCAAACAGCCGACGGTACAGCGCTGGAGCTCGCCAATCAGCGTGAGCA GATGAACGCCATCACGCAACAGGCGATCGAGATCGACTCGATGTTAACAA GGGCAGACCGCCTCGTCAAGGTTTTCTCGAAGCGAATGATGACCGATAAG GTTCGTTTCATTATCTTAATCCCGAAGTGCATCCGTCATAGCCCTGGGTG TAATTATTCCCCCGCGCGTGCACGTATGTGTTCGCGCTTAATGGTGTATT TTCCTTGGTGCATTGTGACCTGTTGGCCCGCGCCTTGGACAGCACATAAA TAGTTGTGTCCCGACATAGATCGTGACTGAATGCTATGGTAGTGGATGCT CCTCACGTCGTATCGTTCATGCATCCTCTACCCTAAACCCCGCCGCCTCA CCGCCGACCCATGTACAGTTCATCCAATGCTTTGGGTGTTTGAACGTAAC GGTGATGGTGGCCATCATCCTATACGTGGTGATCAAGAACGTAGGCCTTC CCGGCAGCGAAGGCGACACCCCTCCTGATCCATCTTCGTAACTGTACGTA TAGCTTGCACCACAAGGAGGCTTCGTTTAATAAGGAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig8971:6404..9642+

>mRNA_H-elongata_contig8971.16468.1 ID=mRNA_H-elongata_contig8971.16468.1|Name=mRNA_H-elongata_contig8971.16468.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1554bp|location=Sequence derived from alignment at H-elongata_contig8971:6404..9642+ (Himanthalia elongata Himel1 dioecious)
ATGGCGAGAAGCGGAGGTAGTAACACTGGAGACGTCAAGTACTGGGACTC
AAACTATGGCAAGATGGCGAGAAGCGGAGGTAGTAACACTGGAGACGTCA
AGTACTGGGACTCAAACTATGGCAAGACCCTGGATGAACTGGAGGCGTTC
ATCTCGACAGCGGAGAAAGGATCGGGAGAAGCGCGCAACGAAGCCCTGGA
GAGCGCGGCCAACGGCTTTAGACGAGTGACGGGCATGAAGCGGAACTACC
ATCTAGAGATCAAGCTCATGACCGAACCCGGTTCTAAGACCCTGGATGAA
CTGGAGGCGTTCATCTCGACAGCGGAGAAAGGATCGGGAGAAGCGCGCAA
CGAAGCCCTGGAGAGCGCGGCCAACGGCTTTAGACGAGTGACGGGCATGA
AGCGGAACTACCATCTAGAGATCAAGCTCATGACCGAACCCGGTTCTAAG
GCGCATTACACCACAGAGAAGTCACAAAAGGACGCGCGCTTAACGGCACT
GCAGACGAGACTCGACGCTGAACAGGCGCATTACACCACAGAGAAGTCAC
AAAAGGACGCGCGCTTAACGGCACTGCAGACGAGACTCGACGCTGAACAG
GCGAGAAGCGGACAGAGCAAGCGGGATGAACTCTTCGGCGGGCGAAGAGA
CATCGAGACGGGAAATTCTGGTGGCGGGGCTCAGACAGCAGAATCGAAGC
TGGACGAGGCGGATCACTACCAGGACAAGACGGAGGAAGCATACAAGGCG
AGAAGCGGACAGAGCAAGCGGGATGAACTCTTCGGCGGGCGAAGAGACAT
CGAGACGGGAAATTCTGGTGGCGGGGCTCAGACAGCAGAATCGAAGCTGG
ACGAGGCGGATCACTACCAGGACAAGACGGAGGAAGCATACAAGAACATG
ATCGGAGTGCTTCAAGAGACTGAGCAAACAGCCGACGGTACAGCGCTGGA
GCTCGCCAATCAGCGTGAGCAGATGAACGCCATCACGCAACAGGCGATCG
AGATCGACTCGATGTTAACAAGGGCAGACCGCCTCGTCAAGGTTTTCTCG
AAGCGAATGATGACCGATAAGGTTCGTTTCATTATCTTAATCCCGAAGTG
CATCCGTCATAGCCCTGGGTGTAATTATTCCCCCGCGCGTGCACGTATGT
GTTCGCGCTTAATGGTGTATTTTCCTTGGTGCATTGTGACCTGTTGGCCC
GCGCCTTGGACAGCACATAAATAGAACATGATCGGAGTGCTTCAAGAGAC
TGAGCAAACAGCCGACGGTACAGCGCTGGAGCTCGCCAATCAGCGTGAGC
AGATGAACGCCATCACGCAACAGGCGATCGAGATCGACTCGATGTTAACA
AGGGCAGACCGCCTCGTCAAGGTTTTCTCGAAGCGAATGATGACCGATAA
GGTTCGTTTCATTATCTTAATCCCGAAGTGCATCCGTCATAGCCCTGGGT
GTAATTATTCCCCCGCGCGTGCACGTATGTGTTCGCGCTTAATGGTGTAT
TTTCCTTGGTGCATTGTGACCTGTTGGCCCGCGCCTTGGACAGCACATAA
ATAG
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