mRNA_H-elongata_contig89709.16467.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89709.16467.1
Unique NamemRNA_H-elongata_contig89709.16467.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig89709.16467.1 vs. uniprot
Match: D8LID6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LID6_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.230e-24
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:    1 RLILRIPTLRRLGLRGSLDLVGGPDTVCDYVPRLTALRELDVSHCTWFCDICLRRFAKAMAMWRGFPSA 207
            RL  RIP+LRRLGLRGS  +VGGPD VCD+VPRL ALRELD+SHCTWFCD+ LRR AK++++ R  P+A
Sbjct:  278 RLTARIPSLRRLGLRGSFGVVGGPDFVCDHVPRLAALRELDLSHCTWFCDLTLRRLAKSLSL-RASPAA 345
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89709.16467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LID6_ECTSI1.230e-2469.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89709contigH-elongata_contig89709:1320..2444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size218
Cds size138
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89709.16467.1prot_H-elongata_contig89709.16467.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89709 1320..2364 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931297.5154674-CDS-H-elongata_contig89709:1319..14001622931297.5154674-CDS-H-elongata_contig89709:1319..1400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89709 1320..1400 -
1691679778.5017736-CDS-H-elongata_contig89709:1319..14001691679778.5017736-CDS-H-elongata_contig89709:1319..1400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89709 1320..1400 -
1622931297.5314345-CDS-H-elongata_contig89709:2307..23641622931297.5314345-CDS-H-elongata_contig89709:2307..2364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89709 2308..2364 -
1691679778.5168545-CDS-H-elongata_contig89709:2307..23641691679778.5168545-CDS-H-elongata_contig89709:2307..2364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89709 2308..2364 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931297.5501788-UTR-H-elongata_contig89709:2364..24441622931297.5501788-UTR-H-elongata_contig89709:2364..2444Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89709 2365..2444 -
1691679778.526605-UTR-H-elongata_contig89709:2364..24441691679778.526605-UTR-H-elongata_contig89709:2364..2444Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig89709 2365..2444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89709.16467.1

>prot_H-elongata_contig89709.16467.1 ID=prot_H-elongata_contig89709.16467.1|Name=mRNA_H-elongata_contig89709.16467.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
MRLRPSAYGAPRAGRISLHVVLRYLPPTVRQGNGNVAGISLCKVR*
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mRNA from alignment at H-elongata_contig89709:1320..2444-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89709.16467.1 ID=mRNA_H-elongata_contig89709.16467.1|Name=mRNA_H-elongata_contig89709.16467.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1125bp|location=Sequence derived from alignment at H-elongata_contig89709:1320..2444- (Himanthalia elongata Himel1 dioecious)
AGGTTGATCCTTCGAATTCCCACCCTGCGGCGACTTGGCCTTAGAGGCTC
TCTCGACCTAGTCGGAGGACCGGACACCGTATGCGACTACGTCCCTCGGC
TTACGGCGCTCCGAGAGCTGGACGTATCTCACTGCACGTGAGTTAGTTCA
AACCACGGCCGAGATTGTTATTGTTATCATGCTTCTTTTGGGGAAAACGC
GGTGCACGTAGGCTGCTTTTCTCTCTTCTTTTTTTTGAAGCGCACAGAGA
GACAGAGACAGAGGTACCCTTGGACCTTGGACCGCCGTCGCTGTGTAATA
ATTTTCGAAAATGACTAATAATATTTGAAAGTTGACTTCTTGCTGGTGAT
GCATCTTTACCCTCCCTCTCTCTTCCTCAGACAGCTTTCGGTCACTCCCT
ACTCTTCCCCTCTCTATGCTGCCATGAAACTGCTAGTCCCTTCATGTACT
CTTTCGAACTATGTTTCGAACAATGTTTCGAACGATGTTCCAGGTTCTTG
TGCGGCTGGCGCCTCTAAAAAACCCTAAAAAAGCAATAGATCCAAACTAT
TATACGACTAGTAAATACTAAAAGTAAAACTAATTCCATACTTAAAAAAA
ACTAATTAAATATGTTTTTAAATTCCCTTTTTCAAACGTCCAAGAGGCTA
ATAAGCATAAAGGAAAAAATAATGTAGTGAAAAGAACAAAAAATAAAGAA
TCCGATTCATTTTATCGTTTTTTATTTTTGTTAAAAAACATATGAACTCA
TCCCAACCCTCCGAACATCCACACTATATCCTATATACTTCTTAGCGCCG
TGAGAGGTACAATCCAGGGGACCAACTATCGCCATGTTCGAATATGTACA
AAATACCTTAGAGCACAAAATTGTTATCGAATTTATTTTTCTGCTATTTA
TTGTACCGGTATAGTACAGTGCAATGTTTCATTTCATTTTACAGTACTTC
GTATATCTTAATTTATTCATAGTATTTATAGTATGTTTTCATAATATTTA
TCCCATCACACATCATTCATCGTTCATCTGCTATCTTCCATCAGGTGGTT
CTGCGATATTTGCCTCCGACGGTTCGCCAAGGCAATGGCAATGTGGCGGG
GATTTCCCTCTGCAAGGTTCGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig89709:1320..2444-

>mRNA_H-elongata_contig89709.16467.1 ID=mRNA_H-elongata_contig89709.16467.1|Name=mRNA_H-elongata_contig89709.16467.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig89709:1320..2444- (Himanthalia elongata Himel1 dioecious)
ATGCGACTACGTCCCTCGGCTTACGGCGCTCCGAGAGCTGGACGTATCTC
ACTGCACATGCGACTACGTCCCTCGGCTTACGGCGCTCCGAGAGCTGGAC
GTATCTCACTGCACGTGGTTCTGCGATATTTGCCTCCGACGGTTCGCCAA
GGCAATGGCAATGTGGCGGGGATTTCCCTCTGCAAGGTTCGATGAGTGGT
TCTGCGATATTTGCCTCCGACGGTTCGCCAAGGCAATGGCAATGTGGCGG
GGATTTCCCTCTGCAAGGTTCGATGA
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