mRNA_H-elongata_contig89648.16463.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89648.16463.1
Unique NamemRNA_H-elongata_contig89648.16463.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig89648.16463.1 vs. uniprot
Match: A0A6H5JHM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM5_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 2.380e-37
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 1
Query:    4 AAVVADPEWTRYAFMFPVGILVATCAQTAGIGGAAIMGPFFLLGLPLIGPSYPLHSVAASIATAILCEAFGFSSG 228
            +A+ A+PEWTRYAFMFPVGILVATCAQTAGIGGAA+  P FLLG PL+GP YPLHSVAAS+ATAILCEAFGFSSG
Sbjct:  143 SALAANPEWTRYAFMFPVGILVATCAQTAGIGGAALTAPVFLLGFPLLGPDYPLHSVAASVATAILCEAFGFSSG 217          
BLAST of mRNA_H-elongata_contig89648.16463.1 vs. uniprot
Match: D7FW33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW33_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 6.530e-36
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 1
Query:    4 AAVVADPEWTRYAFMFPVGILVATCAQTAGIGGAAIMGPFFLLGLPLIGPSYPLHSVAASIATAILCEAFGFSSG 228
            +A+ A+PEWTRYAFMFPVGILVATCAQTAGIGGAA+  P FLLG PL+GP YPLHSVAAS+ATAILCEAFGFSSG
Sbjct:  145 SALAANPEWTRYAFMFPVGILVATCAQTAGIGGAALTAPVFLLGFPLLGPDYPLHSVAASVATAILCEAFGFSSG 219          
BLAST of mRNA_H-elongata_contig89648.16463.1 vs. uniprot
Match: C1EBA3_MICCC (4-toluene sulfonate uptake permease n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EBA3_MICCC)

HSP 1 Score: 92.8 bits (229), Expect = 1.190e-20
Identity = 44/78 (56.41%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 LAAVVADPE--WTRYAFMFPVGILVATCAQTAGIGGAAIMGPFFLLGLPLIGPSYPLHSVAASIATAILCEAFGFSSG 228
            LA + AD    WT+YAFMFPV + VAT A   GIGGAA+  P FLLG P++GP YPL S A +   A+L E FGF+SG
Sbjct:    4 LAQIAADQSDYWTKYAFMFPVSVCVATTAMLTGIGGAALFSPIFLLGFPMLGPGYPLDSAAEAFNVALLTECFGFTSG 81          
BLAST of mRNA_H-elongata_contig89648.16463.1 vs. uniprot
Match: A0A2E7FAG1_9PROT (Probable membrane transporter protein n=2 Tax=unclassified Rhodospirillaceae TaxID=41296 RepID=A0A2E7FAG1_9PROT)

HSP 1 Score: 90.9 bits (224), Expect = 6.170e-20
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 1
Query:   25 EWTRYAFMFPVGILVATCAQTAGIGGAAIMGPFFLLGLPLIGPSYPLHSVAASIATAILCEAFGFSSG 228
            +WT Y FMFPV ILVAT A  +GIGGAAI  P FL+  PL+GP YPL S+AA+I  A+  E FGFSSG
Sbjct:    7 DWTLYWFMFPVAILVATSAMLSGIGGAAIFAPIFLIIFPLLGPEYPLGSLAAAIGVALFTEVFGFSSG 74          
BLAST of mRNA_H-elongata_contig89648.16463.1 vs. uniprot
Match: A0A2E8XRX4_9PROT (Probable membrane transporter protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XRX4_9PROT)

HSP 1 Score: 87.4 bits (215), Expect = 1.230e-18
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1
Query:   16 ADPEWTRYAFMFPVGILVATCAQTAGIGGAAIMGPFFLLGLPLIGPSYPLHSVAASIATAILCEAFGFSSG 228
            AD +WTRY FMFP+ + VAT A  +GIGGAA+  P FL+  P++GP + L   AA+I TA++ E FGFSSG
Sbjct:    5 ADLDWTRYWFMFPISMAVATTAMLSGIGGAALFAPIFLIIFPILGPEFVLAGTAAAIGTALMTEVFGFSSG 75          
BLAST of mRNA_H-elongata_contig89648.16463.1 vs. uniprot
Match: A0A2E7PHJ1_9PROT (Probable membrane transporter protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PHJ1_9PROT)

HSP 1 Score: 86.7 bits (213), Expect = 3.530e-18
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 1
Query:   16 ADPEWTRYAFMFPVGILVATCAQTAGIGGAAIMGPFFLLGLPLIGPSYPLHSVAASIATAILCEAFGFSSG 228
            AD +WTRY FMFPV + VAT A  +GIGGAA+  P FL+  P++GP + L   AA+I TA++ E FGFSSG
Sbjct:   41 ADLDWTRYWFMFPVSMGVATTAMLSGIGGAALFAPIFLIIFPILGPDFVLAGTAAAIGTALMTEVFGFSSG 111          
BLAST of mRNA_H-elongata_contig89648.16463.1 vs. uniprot
Match: A0A2E7I469_9PROT (Probable membrane transporter protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7I469_9PROT)

HSP 1 Score: 82.4 bits (202), Expect = 9.190e-17
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   16 ADPEWTRYAFMFPVGILVATCAQTAGIGGAAIMGPFFLLGLPLIGPSYPLHSVAASIATAILCEAFGFSSG 228
            AD +W RY FMFPV + VAT A  +GIGGAA+  P FL+  P++G  Y L   AA+I TA++ E FGFSSG
Sbjct:    5 ADLDWGRYWFMFPVSMGVATTAMLSGIGGAALFAPIFLIIFPILGSEYVLAGTAAAIGTALMTEVFGFSSG 75          
BLAST of mRNA_H-elongata_contig89648.16463.1 vs. uniprot
Match: A0A7Y2IAV7_9GAMM (Probable membrane transporter protein n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y2IAV7_9GAMM)

HSP 1 Score: 81.6 bits (200), Expect = 1.430e-16
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 1
Query:   25 EWTRYAFMFPVGILVATCAQTAGIGGAAIMGPFFLLGLPLIGPSYPLHSVAASIATAILCEAFGFSSG 228
            ++T Y FMFPV I+VATCA  +GIGGAA+  P F+L  PL+GP Y L S  A++A A++ + FGF SG
Sbjct:    2 DFTLYWFMFPVSIVVATCAMLSGIGGAALFTPIFVLIFPLLGPEYALESTIAAVAAALITQTFGFLSG 69          
BLAST of mRNA_H-elongata_contig89648.16463.1 vs. uniprot
Match: A0A520X777_9GAMM (Probable membrane transporter protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A520X777_9GAMM)

HSP 1 Score: 81.6 bits (200), Expect = 1.450e-16
Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = 1
Query:   25 EWTRYAFMFPVGILVATCAQTAGIGGAAIMGPFFLLGLPLIGPSYPLHSVAASIATAILCEAFGFSSG 228
            ++T Y FMFPV I+VATCA  +GIGGAA+  P F+L  PL+GP Y L+S+ A+I+ A++ + FGF SG
Sbjct:    2 DFTLYWFMFPVSIVVATCAMLSGIGGAALFTPIFILLFPLLGPEYVLNSMIAAISAALITQTFGFFSG 69          
BLAST of mRNA_H-elongata_contig89648.16463.1 vs. uniprot
Match: A0A3M1DDQ0_9ARCH (Probable membrane transporter protein n=1 Tax=Candidatus Woesearchaeota archaeon TaxID=2026803 RepID=A0A3M1DDQ0_9ARCH)

HSP 1 Score: 49.3 bits (116), Expect = 9.280e-5
Identity = 27/63 (42.86%), Postives = 35/63 (55.56%), Query Frame = 1
Query:   40 AFMFPVGILVATCAQTAGIGGAAIMGPFFLLGLPLIGPSYPLHSVAASIATAILCEAFGFSSG 228
            A + P+ I++AT A TAGIGGA +  P FLL   L        S A +    I+ E FGF+SG
Sbjct:    3 ALLLPISIIIATIAMTAGIGGAVLFSPLFLLVYGL--------SPAEAFTLGIIIEVFGFASG 57          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89648.16463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JHM5_9PHAE2.380e-3784.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FW33_ECTSI6.530e-3684.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
C1EBA3_MICCC1.190e-2056.414-toluene sulfonate uptake permease n=1 Tax=Microm... [more]
A0A2E7FAG1_9PROT6.170e-2063.24Probable membrane transporter protein n=2 Tax=uncl... [more]
A0A2E8XRX4_9PROT1.230e-1854.93Probable membrane transporter protein n=1 Tax=Alph... [more]
A0A2E7PHJ1_9PROT3.530e-1856.34Probable membrane transporter protein n=1 Tax=Rhod... [more]
A0A2E7I469_9PROT9.190e-1754.93Probable membrane transporter protein n=2 Tax=Alph... [more]
A0A7Y2IAV7_9GAMM1.430e-1654.41Probable membrane transporter protein n=1 Tax=Woes... [more]
A0A520X777_9GAMM1.450e-1654.41Probable membrane transporter protein n=1 Tax=Chro... [more]
A0A3M1DDQ0_9ARCH9.280e-542.86Probable membrane transporter protein n=1 Tax=Cand... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89648contigH-elongata_contig89648:2128..2409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue3.5e-29
Seed eggNOG ortholog2880.D7FW33
EggNOG free text desc.Sulfite exporter TauE/SafE
EggNOG OGs2CY1Q@1,2S1CE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931296.8459685-CDS-H-elongata_contig89648:2127..24091622931296.8459685-CDS-H-elongata_contig89648:2127..2409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89648 2128..2409 +
1691679778.2951267-CDS-H-elongata_contig89648:2127..24091691679778.2951267-CDS-H-elongata_contig89648:2127..2409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89648 2128..2409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89648.16463.1prot_H-elongata_contig89648.16463.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89648 2128..2409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89648.16463.1

>prot_H-elongata_contig89648.16463.1 ID=prot_H-elongata_contig89648.16463.1|Name=mRNA_H-elongata_contig89648.16463.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
LAAVVADPEWTRYAFMFPVGILVATCAQTAGIGGAAIMGPFFLLGLPLIG
PSYPLHSVAASIATAILCEAFGFSSGGVVVLVKLQLASHASMTF
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mRNA from alignment at H-elongata_contig89648:2128..2409+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89648.16463.1 ID=mRNA_H-elongata_contig89648.16463.1|Name=mRNA_H-elongata_contig89648.16463.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=282bp|location=Sequence derived from alignment at H-elongata_contig89648:2128..2409+ (Himanthalia elongata Himel1 dioecious)
TTGGCAGCGGTGGTGGCGGATCCTGAGTGGACGCGATATGCCTTCATGTT TCCGGTGGGAATACTCGTTGCCACGTGCGCCCAAACGGCGGGCATTGGGG GAGCCGCTATTATGGGCCCGTTTTTTCTGCTGGGACTGCCGCTTATAGGA CCTTCTTATCCCCTGCACTCAGTAGCGGCATCCATCGCCACCGCGATTTT GTGCGAGGCATTCGGTTTCTCTTCAGGTGGGGTTGTTGTCCTGGTAAAGC TCCAACTGGCTTCTCATGCATCGATGACGTTT
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Coding sequence (CDS) from alignment at H-elongata_contig89648:2128..2409+

>mRNA_H-elongata_contig89648.16463.1 ID=mRNA_H-elongata_contig89648.16463.1|Name=mRNA_H-elongata_contig89648.16463.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig89648:2128..2409+ (Himanthalia elongata Himel1 dioecious)
TTGGCAGCGGTGGTGGCGGATCCTGAGTGGACGCGATATGCCTTCATGTT
TCCGGTGGGAATACTCGTTGCCACGTGCGCCCAAACGGCGGGCATTGGGG
GAGCCGCTATTATGGGCCCGTTTTTTCTGCTGGGACTGCCGCTTATAGGA
CCTTCTTATCCCCTGCACTCAGTAGCGGCATCCATCGCCACCGCGATTTT
GTGCGAGGCATTCGGTTTCTCTTCAGGTGGGGTTGTTGTCCTGGTAAAGC
TCCAACTGGCTTCTCATGCATCGATGACGTTTTTGGCAGCGGTGGTGGCG
GATCCTGAGTGGACGCGATATGCCTTCATGTTTCCGGTGGGAATACTCGT
TGCCACGTGCGCCCAAACGGCGGGCATTGGGGGAGCCGCTATTATGGGCC
CGTTTTTTCTGCTGGGACTGCCGCTTATAGGACCTTCTTATCCCCTGCAC
TCAGTAGCGGCATCCATCGCCACCGCGATTTTGTGCGAGGCATTCGGTTT
CTCTTCAGGTGGGGTTGTTGTCCTGGTAAAGCTCCAACTGGCTTCTCATG
CATCGATGACGTTT
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