mRNA_H-elongata_contig89639.16461.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89639.16461.1
Unique NamemRNA_H-elongata_contig89639.16461.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig89639.16461.1 vs. uniprot
Match: D7G1J7_ECTSI (Ubiquinone Biosynthesis Monooxygenase COQ6 (C-terminal region) Ubiquinone Biosynthesis Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J7_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 4.240e-13
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    4 IQVWDDRGPGFLHFDGETPG---EALGYVAEHGLLHSTLFQRVKDLEEAEGKDAVELTSPAQV 183
            +QVWDDRG G L FDGE  G    ALG+++EHG++HS+LF+RV++LE A+G    ELT PAQV
Sbjct:  162 MQVWDDRGAGHLRFDGEGKGGKTTALGFISEHGVIHSSLFERVRELE-ADG--LAELTCPAQV 221
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BLAST of mRNA_H-elongata_contig89639.16461.1 vs. uniprot
Match: A0A6H5KUH3_9PHAE (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH3_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.960e-9
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 NIQVWDDRGPGFLHFDGETPG---EALGYVAEHGLLHSTLFQRVKDLE 135
            N +VWDDRG G L FDGE  G    ALG+++EH ++HS+LF+RV++ E
Sbjct:   40 NGKVWDDRGAGHLRFDGEGKGGRTAALGFISEHSVIHSSLFERVREFE 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89639.16461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1J7_ECTSI4.240e-1358.73Ubiquinone Biosynthesis Monooxygenase COQ6 (C-term... [more]
A0A6H5KUH3_9PHAE4.960e-954.17FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89639contigH-elongata_contig89639:531..716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue8.4e-11
Seed eggNOG ortholog2880.D7G1J7
Preferred nameCOQ6
KEGG rclassRC02670
KEGG koko:K06126,ko:K21437
KEGG ReactionR04982,R08773
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00128
EggNOG free text desc.FAD binding
EggNOG OGsCOG0654@1,KOG3855@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931296.7041495-CDS-H-elongata_contig89639:530..7161622931296.7041495-CDS-H-elongata_contig89639:530..716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89639 531..716 -
1691679778.2202332-CDS-H-elongata_contig89639:530..7161691679778.2202332-CDS-H-elongata_contig89639:530..716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89639 531..716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89639.16461.1prot_H-elongata_contig89639.16461.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89639 531..716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89639.16461.1

>prot_H-elongata_contig89639.16461.1 ID=prot_H-elongata_contig89639.16461.1|Name=mRNA_H-elongata_contig89639.16461.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
NIQVWDDRGPGFLHFDGETPGEALGYVAEHGLLHSTLFQRVKDLEEAEGK
DAVELTSPAQV*
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mRNA from alignment at H-elongata_contig89639:531..716-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89639.16461.1 ID=mRNA_H-elongata_contig89639.16461.1|Name=mRNA_H-elongata_contig89639.16461.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig89639:531..716- (Himanthalia elongata Himel1 dioecious)
AACATCCAGGTGTGGGACGACCGAGGGCCTGGGTTTCTGCACTTTGACGG
GGAGACACCTGGCGAGGCCCTTGGCTACGTAGCGGAGCACGGTCTCCTCC
ATTCGACGTTATTTCAGCGGGTGAAAGATTTGGAAGAGGCGGAGGGGAAA
GATGCGGTGGAGCTTACGTCCCCGGCTCAGGTATAG
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Coding sequence (CDS) from alignment at H-elongata_contig89639:531..716-

>mRNA_H-elongata_contig89639.16461.1 ID=mRNA_H-elongata_contig89639.16461.1|Name=mRNA_H-elongata_contig89639.16461.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig89639:531..716- (Himanthalia elongata Himel1 dioecious)
AACATCCAGGTGTGGGACGACCGAGGGCCTGGGTTTCTGCACTTTGACGG
GGAGACACCTGGCGAGGCCCTTGGCTACGTAGCGGAGCACGGTCTCCTCC
ATTCGACGTTATTTCAGCGGGTGAAAGATTTGGAAGAGGCGGAGGGGAAA
GATGCGGTGGAGCTTACGTCCCCGGCTCAGGTATAGAACATCCAGGTGTG
GGACGACCGAGGGCCTGGGTTTCTGCACTTTGACGGGGAGACACCTGGCG
AGGCCCTTGGCTACGTAGCGGAGCACGGTCTCCTCCATTCGACGTTATTT
CAGCGGGTGAAAGATTTGGAAGAGGCGGAGGGGAAAGATGCGGTGGAGCT
TACGTCCCCGGCTCAGGTATAG
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