mRNA_H-elongata_contig8962.16459.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8962.16459.1
Unique NamemRNA_H-elongata_contig8962.16459.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 9.940e-38
Identity = 65/137 (47.45%), Postives = 96/137 (70.07%), Query Frame = 1
Query:    1 NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGK-YRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQKLWRM 408
            +YV+VARVR+ G   KL  TWTGPWRVV    +HV  V++I  G+ ++VHV R+R YADS L V  ++++VFQ +  QGE EM  ++++G  PA  G  Y V++ W G E++E TW+P+S IY DAP++++Q+L +M
Sbjct:   19 DYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKM 153          
BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 3.320e-35
Identity = 65/137 (47.45%), Postives = 96/137 (70.07%), Query Frame = 1
Query:    1 NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGK-YRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQKLWRM 408
            +YV+VARVR+ G   KL  TWTGPWRVV    +HV  V++I  G+ ++VHV R+R YADS L V  ++++VFQ +  QGE EM  ++++G  PA  G  Y V++ W G E++E TW+P+S IY DAP++++Q+L +M
Sbjct:  274 DYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKM 408          
BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 4.580e-34
Identity = 65/137 (47.45%), Postives = 96/137 (70.07%), Query Frame = 1
Query:    1 NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGK-YRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQKLWRM 408
            +YV+VARVR+ G   KL  TWTGPWRVV    +HV  V++I  G+ ++VHV R+R YADS L V  ++++VFQ +  QGE EM  ++++G  PA  G  Y V++ W G E++E TW+P+S IY DAP++++Q+L +M
Sbjct: 1497 DYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKM 1631          
BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.240e-17
Identity = 47/128 (36.72%), Postives = 75/128 (58.59%), Query Frame = 1
Query:   25 RKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGKYRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQKLWRM 408
            R    V  L     G + +V     HV  V++I +GE ++VHV R+R YAD+ L +  E++EVFQ    QGEFEMA ++ +       G + V++ WVG + EE TWE +S ++  AP++++ +L R+
Sbjct: 1584 RASARVGSLPDFVVGDYVIVAAERLHVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAEDGPG-FDVEVEWVGFDKEENTWEELSKMWDAAPQFVKSELRRL 1710          
BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6G0RPX5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RPX5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.340e-14
Identity = 45/131 (34.35%), Postives = 74/131 (56.49%), Query Frame = 1
Query:    1 NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGKYRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQ 393
            ++VL +RV       KL+  W GP+RVV    +H  ++E + T +  EVH  R++ Y DS L V  E++E   + K      +  +++   +P    ++ VQ+AW+GLED E +WEP+  IYAD P  +++
Sbjct:  229 DFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIEHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKVQE 355          
BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6A4G1U2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4G1U2_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.160e-14
Identity = 44/131 (33.59%), Postives = 74/131 (56.49%), Query Frame = 1
Query:    1 NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGKYRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQ 393
            ++VL +RV       KL+  W GP+RVV    +H  +++ + T +  EVH  R++ Y DS L V  E++E   + K      +  +++   +P    ++ VQ+AW+GLED E +WEP+  IYAD P  +++
Sbjct:  852 DFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIDHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKVQE 978          
BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6A3KPV3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3KPV3_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.290e-14
Identity = 44/131 (33.59%), Postives = 74/131 (56.49%), Query Frame = 1
Query:    1 NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGKYRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQ 393
            ++VL +RV       KL+  W GP+RVV    +H  +++ + T +  EVH  R++ Y DS L V  E++E   + K      +  +++   +P    ++ VQ+AW+GLED E +WEP+  IYAD P  +++
Sbjct: 1268 DFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIDHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKVQE 1394          
BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A225VKM9_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VKM9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.580e-13
Identity = 46/131 (35.11%), Postives = 71/131 (54.20%), Query Frame = 1
Query:    1 NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGKYRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQ 393
            ++VL +RV       KL+  W GP+RVV    +H  +V+ + T +  EVH  R++ Y DS L V  E++E       QG      V+ V        ++ VQ+AW+GLED E +WEP+ +IY D P  +++
Sbjct: 1083 DFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIVQHLITKDKVEVHGSRLKFYCDSSLNVTAELKE---HVAKQGI-----VLGVRASITGSTQWEVQVAWIGLEDVENSWEPLRSIYVDVPTKVQE 1204          
BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6H5LBX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBX7_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.630e-11
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   58 TWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVI 261
            TWTGPWR+V     HV  V++I  GE ++VHV R+R YAD+ L +    ++VF+    Q EFEMA ++
Sbjct:    2 TWTGPWRIVAAVRPHVCGVQNIVWGEDRDVHVARLRFYADASLEITAGSKDVFKHAFTQEEFEMAAIV 69          
BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6H5L994_9PHAE (Chromo domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L994_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.090e-9
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 1
Query:  130 GETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGKYRVQIAWVGLEDEEPTWEPMSTI 363
            GE ++VHV R+R YAD+ L +  E+ + FQ    QG FEMA ++ V +     G + V++ WVG + +E  WE +S I
Sbjct:    4 GEVRDVHVKRLRFYADAALEITAELNDDFQHAFTQGAFEMAAIVDVSESEDGPG-FDVEVEWVGFDKDENIWEELSKI 80          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAI3_9PHAE9.940e-3847.45Chromo domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JVS6_9PHAE3.320e-3547.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE4.580e-3447.45Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE1.240e-1736.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6G0RPX5_9STRA1.340e-1434.35Uncharacterized protein n=4 Tax=Phytophthora fraga... [more]
A0A6A4G1U2_9STRA5.160e-1433.59Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A6A3KPV3_9STRA5.290e-1433.59Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]
A0A225VKM9_9STRA4.580e-1335.11RNA-directed DNA polymerase n=1 Tax=Phytophthora m... [more]
A0A6H5LBX7_9PHAE2.630e-1145.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L994_9PHAE1.090e-939.74Chromo domain-containing protein n=2 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8962contigH-elongata_contig8962:5392..5802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue2.6e-12
Seed eggNOG ortholog4792.ETI44068
EggNOG free text desc.Chromo (CHRromatin Organisation MOdifier) domain
EggNOG OGs2CVEU@1,2RRWF@2759,3QHXS@4776
COG Functional cat.B
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size411
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931296.6115983-CDS-H-elongata_contig8962:5391..58021622931296.6115983-CDS-H-elongata_contig8962:5391..5802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8962 5392..5802 +
1691679778.1927178-CDS-H-elongata_contig8962:5391..58021691679778.1927178-CDS-H-elongata_contig8962:5391..5802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8962 5392..5802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8962.16459.1prot_H-elongata_contig8962.16459.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8962 5392..5802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8962.16459.1

>prot_H-elongata_contig8962.16459.1 ID=prot_H-elongata_contig8962.16459.1|Name=mRNA_H-elongata_contig8962.16459.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVH
VVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGKYR
VQIAWVGLEDEEPTWEPMSTIYADAPKYIEQKLWRM*
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mRNA from alignment at H-elongata_contig8962:5392..5802+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8962.16459.1 ID=mRNA_H-elongata_contig8962.16459.1|Name=mRNA_H-elongata_contig8962.16459.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=411bp|location=Sequence derived from alignment at H-elongata_contig8962:5392..5802+ (Himanthalia elongata Himel1 dioecious)
AATTATGTCTTGGTGGCTCGGGTGCGGAAACCGGGACATGTGCGTAAGCT CGTACAGACGTGGACTGGACCGTGGCGTGTTGTGCCTGGAGGATCAGAGC ATGTTCGTGTAGTGGAGGACATTGCCACGGGGGAAACCCAGGAAGTGCAC GTGGTGCGGATGCGTCCGTATGCTGATTCATTTCTGGTTGTGGGGGTAGA GGTGCGCGAAGTGTTTCAAATGACCAAGCATCAGGGAGAGTTTGAGATGG CCGACGTGATCAGTGTTGGTAAGGATCCGGCGCGAGTAGGAAAATACAGG GTGCAGATCGCGTGGGTTGGTCTTGAGGATGAGGAGCCAACGTGGGAACC GATGTCAACTATCTACGCCGACGCTCCCAAGTATATAGAACAGAAGCTAT GGAGGATGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig8962:5392..5802+

>mRNA_H-elongata_contig8962.16459.1 ID=mRNA_H-elongata_contig8962.16459.1|Name=mRNA_H-elongata_contig8962.16459.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig8962:5392..5802+ (Himanthalia elongata Himel1 dioecious)
AATTATGTCTTGGTGGCTCGGGTGCGGAAACCGGGACATGTGCGTAAGCT
CGTACAGACGTGGACTGGACCGTGGCGTGTTGTGCCTGGAGGATCAGAGC
ATGTTCGTGTAGTGGAGGACATTGCCACGGGGGAAACCCAGGAAGTGCAC
GTGGTGCGGATGCGTCCGTATGCTGATTCATTTCTGGTTGTGGGGGTAGA
GGTGCGCGAAGTGTTTCAAATGACCAAGCATCAGGGAGAGTTTGAGATGG
CCGACGTGATCAGTGTTGGTAAGGATCCGGCGCGAGTAGGAAAATACAGG
GTGCAGATCGCGTGGGTTGGTCTTGAGGATGAGGAGCCAACGTGGGAACC
GATGTCAACTATCTACGCCGACGCTCCCAAGTATATAGAACAGAAGCTAT
GGAGGATGTGAAATTATGTCTTGGTGGCTCGGGTGCGGAAACCGGGACAT
GTGCGTAAGCTCGTACAGACGTGGACTGGACCGTGGCGTGTTGTGCCTGG
AGGATCAGAGCATGTTCGTGTAGTGGAGGACATTGCCACGGGGGAAACCC
AGGAAGTGCACGTGGTGCGGATGCGTCCGTATGCTGATTCATTTCTGGTT
GTGGGGGTAGAGGTGCGCGAAGTGTTTCAAATGACCAAGCATCAGGGAGA
GTTTGAGATGGCCGACGTGATCAGTGTTGGTAAGGATCCGGCGCGAGTAG
GAAAATACAGGGTGCAGATCGCGTGGGTTGGTCTTGAGGATGAGGAGCCA
ACGTGGGAACCGATGTCAACTATCTACGCCGACGCTCCCAAGTATATAGA
ACAGAAGCTATGGAGGATGTGA
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