mRNA_H-elongata_contig8958.16457.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8958.16457.1
Unique NamemRNA_H-elongata_contig8958.16457.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig8958.16457.1 vs. uniprot
Match: D7FNP7_ECTSI (Caffeate O-Methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNP7_ECTSI)

HSP 1 Score: 385 bits (988), Expect = 2.450e-131
Identity = 179/237 (75.53%), Postives = 206/237 (86.92%), Query Frame = 1 
Query:    1 WYERAYDYWEDGENCALDEDGVLGGYGHISPIDINGSAAFLDELQSMRPLLGNDKAAGWIWSIFICFVRLVLGACCCTDCGAGIGRVTKHLLLERFDTVDIVEQSPRLLRAAPKYIGRDRDRTACLCVGLQDFFPAENSYDLVWIQWVVGHFTDVDFVKLISRCRAALRRGGLVVVKDNVVGEGQGAFKVDSDDSSMTRSLGYFRSLFNHGEIKVVHQRQQEGFPGEIFPVYMFALE 711
            WYERAYDYWEDG+NC +D+DGVLGGYGHISP DI GSAAFLDEL+ MRPLLG++ AA                     DCGAGIGRVTKHLLL+RFDTVDIVEQSPRL++AAPKY+GRDRDRT C+CVGLQDFFP E+SYDLVWIQWVVGHFTDVD +KL++RCR+ALR+GGL+VVKDNV+G+G+GAFKVDS+DSSMTRSLGYFRSLFNHG ++VVHQ +Q+GFPGE+FPVYMFALE
Sbjct:  102 WYERAYDYWEDGDNCPVDDDGVLGGYGHISPTDIAGSAAFLDELKRMRPLLGDETAA---------------------DCGAGIGRVTKHLLLDRFDTVDIVEQSPRLIQAAPKYVGRDRDRTTCVCVGLQDFFPPEDSYDLVWIQWVVGHFTDVDLLKLLARCRSALRKGGLIVVKDNVIGQGEGAFKVDSEDSSMTRSLGYFRSLFNHGGVRVVHQTRQDGFPGELFPVYMFALE 317
[Close]
BLAST of mRNA_H-elongata_contig8958.16457.1 vs. uniprot
Match: A0A067BRJ5_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BRJ5_SAPPC)

HSP 1 Score: 246 bits (628), Expect = 1.830e-77
Identity = 116/237 (48.95%), Postives = 158/237 (66.67%), Query Frame = 1 
Query:    1 WYERAYDYWEDGENCALDEDGVLGGYGHISPIDINGSAAFLDELQSMRPLLGNDKAAGWIWSIFICFVRLVLGACCCTDCGAGIGRVTKHLLLERFDTVDIVEQSPRLLRAAPKYIGRDRDRT-ACLCVGLQDFFPAENSYDLVWIQWVVGHFTDVDFVKLISRCRAALRRGGLVVVKDNVVGEGQGAFKVDSDDSSMTRSLGYFRSLFNHGEIKVVHQRQQEGFPGEIFPVYMFAL 708
            WY +  DYWED ENC  D  GVLGGYG+ISPIDI GS AFL  +Q++RP    D+A                      DCG GIGRV KHLLL  F +VD++EQSPRLL+AAP+YIG ++ R    LC+G+QDF P+ NSYDL+W QWV  H  D+DF+K + RC+ ALR GG++ +K+N++ +G   +++D DDSS+TRS  Y++S+F    + ++   +QEGFP E++PV  +AL
Sbjct:   54 WYTQGADYWEDEENCPPDVGGVLGGYGYISPIDIEGSTAFLARVQALRPAFKRDRAI---------------------DCGGGIGRVVKHLLLPLFASVDLLEQSPRLLKAAPRYIGAEKHRVETLLCMGMQDFDPSPNSYDLIWCQWVCPHLMDLDFIKFLQRCQQALRPGGVICIKENIIVDGS-PYELDEDDSSVTRSAAYYKSIFRQANLTLLADERQEGFPEELYPVMTYAL 268
[Close]
BLAST of mRNA_H-elongata_contig8958.16457.1 vs. uniprot
Match: A0A1V9YYT0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YYT0_9STRA)

HSP 1 Score: 244 bits (622), Expect = 1.480e-76
Identity = 115/237 (48.52%), Postives = 156/237 (65.82%), Query Frame = 1 
Query:    1 WYERAYDYWEDGENCALDEDGVLGGYGHISPIDINGSAAFLDELQSMRPLLGNDKAAGWIWSIFICFVRLVLGACCCTDCGAGIGRVTKHLLLERFDTVDIVEQSPRLLRAAPKYIGRDRDRTA-CLCVGLQDFFPAENSYDLVWIQWVVGHFTDVDFVKLISRCRAALRRGGLVVVKDNVVGEGQGAFKVDSDDSSMTRSLGYFRSLFNHGEIKVVHQRQQEGFPGEIFPVYMFAL 708
            WY +  DYWED  NC  D  GVLGGYG+ISP+DI GS +FLD +Q++RP      A                      DCG GIGRV KHLLL  F TVD++EQSPRLL+AAP+YIG+D+ R    LC+G+QDF PA  SYDL+W QWV  H  DVDF+  + RC+ ALR GG++ +K+N++ +G   ++VD +DSS+TRS  Y++S+F    +K++ + +Q GFP E++PV  +AL
Sbjct:   54 WYTQGADYWEDEVNCPPDVGGVLGGYGYISPVDIEGSLSFLDRVQALRPEFTRSHAI---------------------DCGGGIGRVVKHLLLPHFQTVDLLEQSPRLLKAAPRYIGKDKSRVRQLLCMGMQDFDPAPMSYDLIWCQWVCPHLMDVDFITFLQRCQRALRPGGVICIKENIIVDGS-PYEVDEEDSSLTRSTAYYKSIFRQAGLKILTEERQTGFPEELYPVMSYAL 268
[Close]
BLAST of mRNA_H-elongata_contig8958.16457.1 vs. uniprot
Match: A0A836CCK3_9STRA (AdoMet dependent proline di-methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCK3_9STRA)

HSP 1 Score: 235 bits (599), Expect = 2.990e-73
Identity = 127/259 (49.03%), Postives = 163/259 (62.93%), Query Frame = 1 
Query:    4 YERAYDYWEDGENCALDEDGVLGGYGHISPIDINGSAAFLDELQSMRPLLGNDKAAGWIWSIFICFVRLVLGACCCTDCGAGIGRVTKHLLLERFDTVDIVEQSPRLLRAAPKYIGRDRDRTACLCVGLQDFFPAENSYDLVWIQWVVGHFTDVDFVKLISRCRAALRRGGLVVVKDNVVG---------------EGQG-------AFKVDSDDSSMTRSLGYFRSLFNHGEIKVVHQRQQEG-FPGEIFPVYMFALE 711
            + +AYDYWE   +     +GVLGGYG +SPIDI GS  FL EL+S+RP LG ++AA                     DCGAGIGR+T+  LL+ FD VD+VEQSP+LL AAP+++G  RD    +C+GLQDF P  ++YD++W+QWVVGH TDVDFVK + RCR ALR  G++V+KDN                  E  G       AF +DSDDSS+ RS+ YFRSLF H ++ VV QR++   FP EIFPV+ FALE
Sbjct:   23 FPKAYDYWEASPSTI---EGVLGGYGELSPIDIAGSTKFLAELKSLRPGLGCERAA---------------------DCGAGIGRITRDFLLQHFDAVDMVEQSPKLLEAAPRFLGPLRDCVEYICMGLQDFCPPADTYDVIWVQWVVGHLTDVDFVKFLRRCRQALRPHGVLVLKDNCCSCDGSADAPDGTDNSCEDSGGNAGASSAFVLDSDDSSVARSVAYFRSLFKHADMDVVLQRREASIFPEEIFPVFYFALE 257
[Close]
BLAST of mRNA_H-elongata_contig8958.16457.1 vs. uniprot
Match: A0A485KWK6_9STRA (Aste57867_12822 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KWK6_9STRA)

HSP 1 Score: 231 bits (589), Expect = 2.890e-71
Identity = 115/237 (48.52%), Postives = 149/237 (62.87%), Query Frame = 1 
Query:    1 WYERAYDYWEDGENCALDEDGVLGGYGHISPIDINGSAAFLDELQSMRPLLGNDKAAGWIWSIFICFVRLVLGACCCTDCGAGIGRVTKHLLLERFDTVDIVEQSPRLLRAAPKYIGRDRDRTACL-CVGLQDFFPAENSYDLVWIQWVVGHFTDVDFVKLISRCRAALRRGGLVVVKDNVVGEGQGAFKVDSDDSSMTRSLGYFRSLFNHGEIKVVHQRQQEGFPGEIFPVYMFAL 708
            WY    DYWE  ENC   + GVLGGYGHISPID+ GSAAFLD LQ  RP +  + A                      DCG G+GRV K+LLL R+  VD +EQS RLL AAP YIG ++ R   L C+G+QDF P   SYDL+W QWV+GH TDVDFV  + RC+AAL  GG++ +K+N + EG   + VD DDSS+ RS  Y++S+F    + ++ + +Q GFP E++PV  +AL
Sbjct:   77 WYTSGADYWEAEENCPPTDMGVLGGYGHISPIDVEGSAAFLDRLQKSRPTMQQNLAI---------------------DCGCGVGRVVKNLLLPRYTAVDCLEQSQRLLAAAPSYIGAEKARVRNLYCMGMQDFEPVARSYDLIWCQWVLGHLTDVDFVAFLKRCQAALAPGGVICIKENAINEGV-PYYVDKDDSSLGRSSAYYKSIFRQAGLTLLAEERQCGFPEELYPVITYAL 291
[Close]
BLAST of mRNA_H-elongata_contig8958.16457.1 vs. uniprot
Match: A0A6G0WSU0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSU0_9STRA)

HSP 1 Score: 228 bits (581), Expect = 2.340e-70
Identity = 108/237 (45.57%), Postives = 152/237 (64.14%), Query Frame = 1 
Query:    1 WYERAYDYWEDGENCALDEDGVLGGYGHISPIDINGSAAFLDELQSMRPLLGNDKAAGWIWSIFICFVRLVLGACCCTDCGAGIGRVTKHLLLERFDTVDIVEQSPRLLRAAPKYIGRDRDRTACL-CVGLQDFFPAENSYDLVWIQWVVGHFTDVDFVKLISRCRAALRRGGLVVVKDNVVGEGQGAFKVDSDDSSMTRSLGYFRSLFNHGEIKVVHQRQQEGFPGEIFPVYMFAL 708
            WY    +YWE+ ENC  ++ GVLGGYGHISP+D+ GS+AFLD +Q++RP +  + A                      DCG G+GRV  +LLL R+  VD +EQS RLL+  P Y+G ++ R   L C+G+QDF P   SYDL+W QWV+GH TDVDFV  + RC+AAL  GG++ +K+N + EG   + VD DDSS+ RS  Y++S+F    + ++ + +QEGFP E++PV  +AL
Sbjct:   55 WYTSGAEYWENEENCPPNDQGVLGGYGHISPVDVEGSSAFLDHIQTLRPAMQRNLAI---------------------DCGCGVGRVVNNLLLPRYTAVDCLEQSQRLLQTIPSYVGPEKARIRNLYCMGMQDFDPKPGSYDLIWCQWVLGHLTDVDFVAFLKRCQAALAPGGVICIKENAINEGV-PYYVDKDDSSLGRSSVYYKSIFRQAGLTLLAETKQEGFPDELYPVITYAL 269
[Close]
BLAST of mRNA_H-elongata_contig8958.16457.1 vs. uniprot
Match: K3X303_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X303_GLOUD)

HSP 1 Score: 228 bits (582), Expect = 4.460e-70
Identity = 113/240 (47.08%), Postives = 153/240 (63.75%), Query Frame = 1 
Query:    1 WYERAYDYWEDGENCALDEDGVLGGYGHISPIDINGSAAFLDELQSMRPLLGNDKAAGWIWSIFICFVRLVLGACCCTDCGAGIGRVTKHLLLERFDTVDIVEQSPRLLRAAPKYIGRDRDRTACL----CVGLQDFFPAENSYDLVWIQWVVGHFTDVDFVKLISRCRAALRRGGLVVVKDNVVGEGQGAFKVDSDDSSMTRSLGYFRSLFNHGEIKVVHQRQQEGFPGEIFPVYMFAL 708
            WY  A+D+WED +NC + ++GVLGG+ H+SP+DI GS  FL  +Q +RP        GW   + +             DCGAGIGRV+K LLL  F  VD+VEQSPRLL++ P+Y+GR    T  +    C+GLQDF+P E  YDL+WIQWV  H TDVDFV  + RC+ AL   G + VK+NVV  G   F++D +DSS+TRS  Y++SLF    + ++ +  Q+ FP E++PV MFAL
Sbjct:   84 WYSSAHDFWEDEKNCPVTDNGVLGGFAHVSPVDIKGSERFLARVQKLRP--------GWERQLAV-------------DCGAGIGRVSKFLLLPTFKQVDLVEQSPRLLQSVPQYVGRTSSDTKRIRNLYCMGLQDFYPEEQKYDLIWIQWVSSHLTDVDFVHFLKRCKQALAPNGWIGVKENVVLSGT-PFELDREDSSITRSAAYYKSLFKQAGLTIIVEELQQHFPRELYPVKMFAL 301
[Close]
BLAST of mRNA_H-elongata_contig8958.16457.1 vs. uniprot
Match: A0A024TWI1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TWI1_9STRA)

HSP 1 Score: 226 bits (576), Expect = 2.190e-69
Identity = 110/239 (46.03%), Postives = 148/239 (61.92%), Query Frame = 1 
Query:    1 WYERAYDYWEDGENCALDEDGVLGGYGHISPIDINGSAAFLDELQSMRPLLGNDKAAGWIWSIFICFVRLVLGACCCTDCGAGIGRVTKHLLLERFDTVDIVEQSPRLLRAAPKYIGRDRDRTAC---LCVGLQDFFPAENSYDLVWIQWVVGHFTDVDFVKLISRCRAALRRGGLVVVKDNVVGEGQGAFKVDSDDSSMTRSLGYFRSLFNHGEIKVVHQRQQEGFPGEIFPVYMFAL 708
            WY     YWED  NC  ++ GVLGGYGHISP+D+ GS+ FLD +Q +RP +G   A G  +S    F+   +      DCG G+GRV K+LLL RFD VD +EQ  RLL   P YIG   D        C+G+QDF P   +YDL+W QWV+GH TD DFV+ + RC+AAL   G++ +K+N + EG   + VD DDSS+ RS  Y++SLF    + +V + +Q  FP E++PV  +AL
Sbjct:   54 WYTSGAKYWEDENNCPPNDQGVLGGYGHISPVDVEGSSRFLDRVQELRPGMGRQLAIGVSFSESHGFIAFKV------DCGCGVGRVVKNLLLPRFDAVDCLEQCQRLLNTVPSYIGNASDTARIRNLYCMGMQDFQPEAGTYDLIWCQWVLGHLTDSDFVEFMKRCQAALAPNGVICIKENAINEGA-PYYVDKDDSSLGRSPVYYKSLFRQAGLTLVAEAEQSDFPDELYPVVSYAL 285
[Close]
BLAST of mRNA_H-elongata_contig8958.16457.1 vs. uniprot
Match: A0A8K1CPE5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPE5_PYTOL)

HSP 1 Score: 222 bits (565), Expect = 1.610e-67
Identity = 116/242 (47.93%), Postives = 148/242 (61.16%), Query Frame = 1 
Query:    1 WYERAYDYWEDGENCALDEDGVLGGYGHISPIDINGSAAFLDELQSMRPLLGNDKAAGWIWSIFICFVRLVLGACCCTDCGAGIGRVTKHLLLERFDTVDIVEQSPRLLRAAPKYIGRDRDRTAC------LCVGLQDFFPAENSYDLVWIQWVVGHFTDVDFVKLISRCRAALRRGGLVVVKDNVVGEGQGAFKVDSDDSSMTRSLGYFRSLFNHGEIKVVHQRQQEGFPGEIFPVYMFAL 708
            WY  A DYW+D E C+LD++GVLGG+ HISP D++ S  F+ +L   RP    D                        DCGAGIGRVTK+LLL  F  VD++EQS RLLR  P+YIGRD D  A        C+GLQDF PA  SYDLVWIQWV  H TDVDFV  + RC+A L   G + VK+NV+  G   +++D  DSSMTRS  YF+S+F    ++V+ +  Q+ FP E++PV M+AL
Sbjct:   83 WYSSANDYWQDEEKCSLDDNGVLGGFAHISPADVHDSKEFIYKLALKRPQWKRDVVV---------------------DCGAGIGRVTKNLLLPLFQRVDLIEQSERLLRGVPQYIGRD-DAAALSRVRNLYCMGLQDFTPASRSYDLVWIQWVSSHLTDVDFVDFLKRCKAGLAPHGWIAVKENVLLAGS-PYEIDRQDSSMTRSDVYFKSIFRQAGLEVIAEETQKNFPEELYPVKMYAL 301
[Close]
BLAST of mRNA_H-elongata_contig8958.16457.1 vs. uniprot
Match: W4G1H4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G1H4_9STRA)

HSP 1 Score: 220 bits (561), Expect = 2.660e-67
Identity = 106/239 (44.35%), Postives = 145/239 (60.67%), Query Frame = 1 
Query:    1 WYERAYDYWEDGENCALDEDGVLGGYGHISPIDINGSAAFLDELQSMRPLLGNDKAAGWIWSIFICFVRLVLGACCCTDCGAGIGRVTKHLLLERFDTVDIVEQSPRLLRAAPKYIGRDRDRTAC---LCVGLQDFFPAENSYDLVWIQWVVGHFTDVDFVKLISRCRAALRRGGLVVVKDNVVGEGQGAFKVDSDDSSMTRSLGYFRSLFNHGEIKVVHQRQQEGFPGEIFPVYMFAL 708
            WY     YWED  NC   +DGVLGGYG ISP D+ GSA+FLD +Q++RP +  + A                      DCG G+GRV KHLLL R+D+VD +EQS RLL   P YIGR  D +      C+G+QDF P  ++YDL+W QWV+GH TD DFV  + RC+ AL   G++ +K+N + EG   + VD DDSS+ RS  Y++S+F    + ++ + +Q  FP E++PV  +AL
Sbjct:   56 WYTSGAKYWEDESNCPPTDDGVLGGYGRISPADVEGSASFLDRIQTLRPTMKRNLAI---------------------DCGCGVGRVVKHLLLPRYDSVDCLEQSQRLLNTVPSYIGRSSDTSRIRNLYCMGMQDFQPEPHAYDLIWCQWVLGHLTDSDFVAFLKRCQKALAPDGVICIKENAINEGV-PYYVDKDDSSLGRSSVYYKSIFRQAGLTLLAETEQSDFPDELYPVITYAL 272
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8958.16457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNP7_ECTSI2.450e-13175.53Caffeate O-Methyltransferase n=2 Tax=Ectocarpus Ta... [more]
A0A067BRJ5_SAPPC1.830e-7748.95Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A1V9YYT0_9STRA1.480e-7648.52Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A836CCK3_9STRA2.990e-7349.03AdoMet dependent proline di-methyltransferase-doma... [more]
A0A485KWK6_9STRA2.890e-7148.52Aste57867_12822 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0WSU0_9STRA2.340e-7045.57Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
K3X303_GLOUD4.460e-7047.08Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A024TWI1_9STRA2.190e-6946.03Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A8K1CPE5_PYTOL1.610e-6747.93Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W4G1H4_9STRA2.660e-6744.35Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8958contigH-elongata_contig8958:2737..4043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score304.7
Seed ortholog evalue3.1e-80
Seed eggNOG ortholog2880.D7FNP7
Preferred nameNTMT1
KEGG koko:K14317,ko:K16219,ko:K19579
KEGG TC1.I.1
KEGG Pathwayko03013,ko05169,map03013,map05169
KEGG ModuleM00427
GOsGO:0000226,GO:0002181,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006325,GO:0006412,GO:0006464,GO:0006479,GO:0006480,GO:0006518,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007059,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008276,GO:0008757,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018011,GO:0018012,GO:0018013,GO:0018016,GO:0018193,GO:0018194,GO:0018201,GO:0018208,GO:0018209,GO:0019538,GO:0022402,GO:0031365,GO:0031974,GO:0031981,GO:0032259,GO:0034641,GO:0034645,GO:0035568,GO:0035570,GO:0035572,GO:0035573,GO:0036211,GO:0042054,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0051276,GO:0070013,GO:0071704,GO:0071840,GO:0071885,GO:0071891,GO:0140096,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.O-methyltransferase activity
EggNOG OGsKOG3178@1,KOG3178@2759
EC2.1.1.244,2.1.1.299
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Hectar predicted targeting categorysignal peptide
Exons3
Model size928
Cds size576
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8958.16457.1prot_H-elongata_contig8958.16457.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8958 2951..3905 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931296.4248772-UTR-H-elongata_contig8958:2736..29501622931296.4248772-UTR-H-elongata_contig8958:2736..2950Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8958 2737..2950 -
1691679778.1010895-UTR-H-elongata_contig8958:2736..29501691679778.1010895-UTR-H-elongata_contig8958:2736..2950Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8958 2737..2950 -
1622931296.4815478-UTR-H-elongata_contig8958:3905..40431622931296.4815478-UTR-H-elongata_contig8958:3905..4043Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8958 3906..4043 -
1691679778.1524117-UTR-H-elongata_contig8958:3905..40431691679778.1524117-UTR-H-elongata_contig8958:3905..4043Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8958 3906..4043 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931296.4391572-CDS-H-elongata_contig8958:2950..32711622931296.4391572-CDS-H-elongata_contig8958:2950..3271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8958 2951..3271 -
1691679778.1223865-CDS-H-elongata_contig8958:2950..32711691679778.1223865-CDS-H-elongata_contig8958:2950..3271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8958 2951..3271 -
1622931296.4566684-CDS-H-elongata_contig8958:3399..36051622931296.4566684-CDS-H-elongata_contig8958:3399..3605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8958 3400..3605 -
1691679778.1344512-CDS-H-elongata_contig8958:3399..36051691679778.1344512-CDS-H-elongata_contig8958:3399..3605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8958 3400..3605 -
1622931296.4695494-CDS-H-elongata_contig8958:3856..39051622931296.4695494-CDS-H-elongata_contig8958:3856..3905Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8958 3857..3905 -
1691679778.144258-CDS-H-elongata_contig8958:3856..39051691679778.144258-CDS-H-elongata_contig8958:3856..3905Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8958 3857..3905 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8958.16457.1

>prot_H-elongata_contig8958.16457.1 ID=prot_H-elongata_contig8958.16457.1|Name=mRNA_H-elongata_contig8958.16457.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=192bp
MRPLLGNDKAAGWIWSIFICFVRLVLGACCCTDCGAGIGRVTKHLLLERF
DTVDIVEQSPRLLRAAPKYIGRDRDRTACLCVGLQDFFPAENSYDLVWIQ
WVVGHFTDVDFVKLISRCRAALRRGGLVVVKDNVVGEGQGAFKVDSDDSS
MTRSLGYFRSLFNHGEIKVVHQRQQEGFPGEIFPVYMFALE*
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mRNA from alignment at H-elongata_contig8958:2737..4043-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8958.16457.1 ID=mRNA_H-elongata_contig8958.16457.1|Name=mRNA_H-elongata_contig8958.16457.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1307bp|location=Sequence derived from alignment at H-elongata_contig8958:2737..4043- (Himanthalia elongata Himel1 dioecious)
TGGTACGAACGTGCTTACGACTACTGGGAAGACGGGGAGAACTGTGCTCT
CGACGAGGACGGCGTTCTAGGCGGCTATGGCCACATATCTCCTATCGACA
TCAACGGTTCCGCCGCCTTCCTCGATGAGCTCCAGTCGATGCGTCCACTC
CTAGGCAACGACAAAGCTGCAGGTTGGATCTGGAGCAGTATTTAACCGTT
TGTTCACCACATATGATTTTTCACCGTGATGCGGGAATGTGTCTTGTCTT
CTGTATCATAGATTGCAAAGTTTATGGCAGCGAGTAAACGAATATCAGAA
ACCCTCAACGATACGTCAGCGTTTCTTCTGTAGCACTGACAACGGATTCA
CTAGCGGTGCGGTGGAATCCTACCTCATGACGTCATCGGCTCGTTCCAGT
GAATCGCATAACAATAACGGGGGGGGGCGGGGTATTAGTTTTCATATGTT
TTGTGCGACTTGTGCTGGGCGCCTGCTGCTGTACAGATTGCGGAGCGGGG
ATTGGCAGAGTAACGAAGCACCTTCTTTTAGAACGCTTCGACACCGTGGA
TATTGTGGAGCAGAGTCCACGGCTTCTTCGAGCGGCTCCCAAGTACATTG
GGCGAGATCGAGATCGCACAGCATGTCTATGCGTGGGGCTACAGGTGAGG
ACGATCGATGCACGTGGATTTTTTTCGTGTGTCTTTTGAAAAATAATCAT
ATAACATGAGCAACAGGCTTGATATTCCGGACGGTTCAACAAACAATCGG
ATTGACCACTTGATTTGCGCAGGACTTTTTCCCAGCGGAGAATAGCTACG
ACCTTGTCTGGATCCAGTGGGTGGTCGGGCATTTTACGGACGTTGATTTC
GTGAAGCTGATCAGCCGGTGCCGCGCAGCGCTCAGGAGAGGAGGCCTTGT
CGTGGTCAAGGACAACGTCGTGGGAGAAGGACAGGGTGCGTTTAAGGTCG
ATAGCGATGACAGCAGCATGACCCGATCGCTCGGGTACTTCCGAAGCCTC
TTCAACCACGGAGAAATTAAGGTGGTACATCAACGACAGCAGGAGGGGTT
CCCTGGAGAGATATTCCCCGTGTACATGTTCGCGCTGGAATGACCAAAGC
TCGGCGGTGTTCGTTGAATGCGTGGCGTACTCAAGTCTCAGAAATATCAC
ACGTAATTTGTTTTCCTTTGTACTCCGTTGTTAAGCCTCAGCTATAAAAA
AATCGTCGTGTTAGTAGCGTGATGTTGAATGATCATACGAATTATAGAAA
CCCCTGTTGTGATCGTTTTGTCTCAAGAGACTATCATAAAATATTGAACC
CTTGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig8958:2737..4043-

>mRNA_H-elongata_contig8958.16457.1 ID=mRNA_H-elongata_contig8958.16457.1|Name=mRNA_H-elongata_contig8958.16457.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1152bp|location=Sequence derived from alignment at H-elongata_contig8958:2737..4043- (Himanthalia elongata Himel1 dioecious)
ATGCGTCCACTCCTAGGCAACGACAAAGCTGCAGGTTGGATCTGGAGCAA
TGCGTCCACTCCTAGGCAACGACAAAGCTGCAGGTTGGATCTGGAGCATT
TTCATATGTTTTGTGCGACTTGTGCTGGGCGCCTGCTGCTGTACAGATTG
CGGAGCGGGGATTGGCAGAGTAACGAAGCACCTTCTTTTAGAACGCTTCG
ACACCGTGGATATTGTGGAGCAGAGTCCACGGCTTCTTCGAGCGGCTCCC
AAGTACATTGGGCGAGATCGAGATCGCACAGCATGTCTATGCGTGGGGCT
ACAGTTTTCATATGTTTTGTGCGACTTGTGCTGGGCGCCTGCTGCTGTAC
AGATTGCGGAGCGGGGATTGGCAGAGTAACGAAGCACCTTCTTTTAGAAC
GCTTCGACACCGTGGATATTGTGGAGCAGAGTCCACGGCTTCTTCGAGCG
GCTCCCAAGTACATTGGGCGAGATCGAGATCGCACAGCATGTCTATGCGT
GGGGCTACAGGACTTTTTCCCAGCGGAGAATAGCTACGACCTTGTCTGGA
TCCAGTGGGTGGTCGGGCATTTTACGGACGTTGATTTCGTGAAGCTGATC
AGCCGGTGCCGCGCAGCGCTCAGGAGAGGAGGCCTTGTCGTGGTCAAGGA
CAACGTCGTGGGAGAAGGACAGGGTGCGTTTAAGGTCGATAGCGATGACA
GCAGCATGACCCGATCGCTCGGGTACTTCCGAAGCCTCTTCAACCACGGA
GAAATTAAGGTGGTACATCAACGACAGCAGGAGGGGTTCCCTGGAGAGAT
ATTCCCCGTGTACATGTTCGCGCTGGAATGAGACTTTTTCCCAGCGGAGA
ATAGCTACGACCTTGTCTGGATCCAGTGGGTGGTCGGGCATTTTACGGAC
GTTGATTTCGTGAAGCTGATCAGCCGGTGCCGCGCAGCGCTCAGGAGAGG
AGGCCTTGTCGTGGTCAAGGACAACGTCGTGGGAGAAGGACAGGGTGCGT
TTAAGGTCGATAGCGATGACAGCAGCATGACCCGATCGCTCGGGTACTTC
CGAAGCCTCTTCAACCACGGAGAAATTAAGGTGGTACATCAACGACAGCA
GGAGGGGTTCCCTGGAGAGATATTCCCCGTGTACATGTTCGCGCTGGAAT
GA
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