mRNA_H-elongata_contig121462.1645.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig121462.1645.1
Unique Name	mRNA_H-elongata_contig121462.1645.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig121462.1645.1 vs. uniprot
Match: M4BPP6_HYAAE (Letm1 RBD domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BPP6_HYAAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.270e-9
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 1

Query:    1 QVPRDVMKALPLVMVFAVPFAGYIGPAIGFFYPKNRLPAQFWTPCRRLE 147
            Q PRD++K+LPL++ F VP  GY  P +G+ +PK  LP QFW P ++ +
Sbjct:   58 QAPRDLLKSLPLLVFFGVPLVGYAAPLLGYQFPKQLLPWQFWRPDQKSQ 106

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BLAST of mRNA_H-elongata_contig121462.1645.1 vs. uniprot
Match: A7RXP3_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RXP3_NEMVE)

HSP 1 Score: 60.5 bits (145), Expect = 1.990e-9
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 1

Query:    1 QVPRDVMKALPLVMVFAVPFAGYIGPAIGFFYPKNRLPAQFWTPCRRLE 147
            QV +D++K LP V+VF +PF GY  P I F YPK+ L   +W PC+  +
Sbjct:  122 QVRQDLIKTLPAVLVFCIPFLGYAAPLIAFMYPKHLLSHHYWLPCQEQQ 170

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BLAST of mRNA_H-elongata_contig121462.1645.1 vs. uniprot
Match: A0A1V9ZZ01_9STRA (Letm1 RBD domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZ01_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.870e-9
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 1

Query:    1 QVPRDVMKALPLVMVFAVPFAGYIGPAIGFFYPKNRLPAQFWTPCRRLE 147
            Q PRD++K++PL+++F VP  G I P IG+ +PK  LP QFWT  ++ E
Sbjct:   93 QAPRDLLKSIPLLLMFGVPMLGNIAPIIGYKFPKLTLPWQFWTAEQKAE 141

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BLAST of mRNA_H-elongata_contig121462.1645.1 vs. uniprot
Match: A0A225VLH1_9STRA (Letm1 RBD domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VLH1_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.220e-8
Identity = 22/49 (44.90%), Postives = 32/49 (65.31%), Query Frame = 1

Query:    1 QVPRDVMKALPLVMVFAVPFAGYIGPAIGFFYPKNRLPAQFWTPCRRLE 147
            Q  RD++K+LPL+  F VP  GY  P +G+ +PK  LP QFW P ++ +
Sbjct:   74 QAHRDLLKSLPLLAFFCVPLVGYAAPLLGYQFPKQLLPWQFWRPDQKTQ 122

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BLAST of mRNA_H-elongata_contig121462.1645.1 vs. uniprot
Match: A0A662XRW7_9STRA (Letm1 RBD domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XRW7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.370e-8
Identity = 22/49 (44.90%), Postives = 32/49 (65.31%), Query Frame = 1

Query:    1 QVPRDVMKALPLVMVFAVPFAGYIGPAIGFFYPKNRLPAQFWTPCRRLE 147
            Q  RD++K+LPL+  F VP  GY  P +G+ +PK  LP QFW P ++ +
Sbjct:  104 QAHRDLLKSLPLLAFFCVPMVGYAAPLLGYQFPKQLLPWQFWRPDQKTQ 152

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BLAST of mRNA_H-elongata_contig121462.1645.1 vs. uniprot
Match: A0A6A4D6B5_9STRA (Letm1 RBD domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4D6B5_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.380e-8
Identity = 21/49 (42.86%), Postives = 33/49 (67.35%), Query Frame = 1

Query:    1 QVPRDVMKALPLVMVFAVPFAGYIGPAIGFFYPKNRLPAQFWTPCRRLE 147
            Q  RD++K+LP++ +F VP  GY  P +G+ +PK  LP QFW P ++ +
Sbjct:   96 QAHRDLLKSLPILAIFCVPVLGYAAPLLGYQFPKQLLPWQFWRPDQKTQ 144

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BLAST of mRNA_H-elongata_contig121462.1645.1 vs. uniprot
Match: A0A833TDI3_PHYIN (LETM1-like protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TDI3_PHYIN)

HSP 1 Score: 56.6 bits (135), Expect = 4.550e-8
Identity = 22/49 (44.90%), Postives = 32/49 (65.31%), Query Frame = 1

Query:    1 QVPRDVMKALPLVMVFAVPFAGYIGPAIGFFYPKNRLPAQFWTPCRRLE 147
            Q  RD++K+LPL+  F VP  GY  P +G+ +PK  LP QFW P ++ +
Sbjct:   91 QAHRDLLKSLPLLAFFCVPLLGYAAPLLGYQFPKQLLPWQFWRPDQKTQ 139

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BLAST of mRNA_H-elongata_contig121462.1645.1 vs. uniprot
Match: A0A2P4YM82_9STRA (Letm1 RBD domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YM82_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.810e-8
Identity = 22/49 (44.90%), Postives = 32/49 (65.31%), Query Frame = 1

Query:    1 QVPRDVMKALPLVMVFAVPFAGYIGPAIGFFYPKNRLPAQFWTPCRRLE 147
            Q  RD++K+LPL+  F VP  GY  P +G+ +PK  LP QFW P ++ +
Sbjct:   57 QAHRDLLKSLPLLAFFCVPILGYAAPLLGYQFPKQLLPWQFWRPEQKTQ 105

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BLAST of mRNA_H-elongata_contig121462.1645.1 vs. uniprot
Match: A0A024GDF9_9STRA (Letm1 RBD domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GDF9_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.060e-8
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1

Query:    1 QVPRDVMKALPLVMVFAVPFAGYIGPAIGFFYPKNRLPAQFWT 129
            Q  RD+ K+LPL+++FAVP  GY  P +G+ +PK  LP QFW+
Sbjct:   74 QAHRDLFKSLPLMVLFAVPLVGYAAPILGYKFPKQLLPWQFWS 116

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BLAST of mRNA_H-elongata_contig121462.1645.1 vs. uniprot
Match: F0WW41_9STRA (PREDICTED: similar to predicted protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WW41_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.330e-8
Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 1

Query:    1 QVPRDVMKALPLVMVFAVPFAGYIGPAIGFFYPKNRLPAQFWTPCRRLE 147
            Q  RD+ K+LPL+++F VP  GY  P +GF +PK  LP QFW+  ++ +
Sbjct:  106 QAHRDLFKSLPLLVLFTVPLIGYAAPILGFKFPKQLLPWQFWSDGQKTQ 154

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig121462.1645.1 vs. uniprot

BLAST of mRNA_H-elongata_contig121462.1645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
M4BPP6_HYAAE	1.270e-9	46.94	Letm1 RBD domain-containing protein n=1 Tax=Hyalop...	[more]
A7RXP3_NEMVE	1.990e-9	46.94	Predicted protein n=1 Tax=Nematostella vectensis T...	[more]
A0A1V9ZZ01_9STRA	3.870e-9	48.98	Letm1 RBD domain-containing protein n=1 Tax=Thraus...	[more]
A0A225VLH1_9STRA	3.220e-8	44.90	Letm1 RBD domain-containing protein n=1 Tax=Phytop...	[more]
A0A662XRW7_9STRA	3.370e-8	44.90	Letm1 RBD domain-containing protein n=2 Tax=Nothop...	[more]
A0A6A4D6B5_9STRA	3.380e-8	42.86	Letm1 RBD domain-containing protein n=4 Tax=Phytop...	[more]
A0A833TDI3_PHYIN	4.550e-8	44.90	LETM1-like protein n=1 Tax=Phytophthora infestans ...	[more]
A0A2P4YM82_9STRA	5.810e-8	44.90	Letm1 RBD domain-containing protein n=1 Tax=Phytop...	[more]
A0A024GDF9_9STRA	6.060e-8	51.16	Letm1 RBD domain-containing protein n=1 Tax=Albugo...	[more]
F0WW41_9STRA	6.330e-8	44.90	PREDICTED: similar to predicted protein putative n...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig121462	contig	H-elongata_contig121462:1838..1984 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	signal peptide
Exons	1
Model size	147
Cds size	129
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929714.6603084-UTR-H-elongata_contig121462:1837..1855	1622929714.6603084-UTR-H-elongata_contig121462:1837..1855	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig121462 1838..1855 +
1691679129.4913237-UTR-H-elongata_contig121462:1837..1855	1691679129.4913237-UTR-H-elongata_contig121462:1837..1855	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig121462 1838..1855 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929714.6757898-CDS-H-elongata_contig121462:1855..1984	1622929714.6757898-CDS-H-elongata_contig121462:1855..1984	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig121462 1856..1984 +
1691679129.5040624-CDS-H-elongata_contig121462:1855..1984	1691679129.5040624-CDS-H-elongata_contig121462:1855..1984	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig121462 1856..1984 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig121462.1645.1	prot_H-elongata_contig121462.1645.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig121462 1856..1984 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig121462:1838..1984+
coding sequence from alignment at H-elongata_contig121462:1838..1984+

protein sequence of mRNA_H-elongata_contig121462.1645.1

>prot_H-elongata_contig121462.1645.1 ID=prot_H-elongata_contig121462.1645.1|Name=mRNA_H-elongata_contig121462.1645.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
MKALPLVMVFAVPFAGYIGPAIGFFYPKNRLPAQFWTPCRRLE

mRNA from alignment at H-elongata_contig121462:1838..1984+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig121462.1645.1 ID=mRNA_H-elongata_contig121462.1645.1|Name=mRNA_H-elongata_contig121462.1645.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig121462:1838..1984+ (Himanthalia elongata Himel1 dioecious)
CAGGTTCCGCGTGACGTCATGAAGGCATTACCTCTGGTGATGGTGTTCGC
GGTGCCTTTCGCTGGTTACATAGGGCCGGCTATAGGGTTTTTCTACCCCA
AGAATCGTCTCCCAGCACAATTTTGGACTCCGTGTCGACGGCTGGAA

Coding sequence (CDS) from alignment at H-elongata_contig121462:1838..1984+

>mRNA_H-elongata_contig121462.1645.1 ID=mRNA_H-elongata_contig121462.1645.1|Name=mRNA_H-elongata_contig121462.1645.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig121462:1838..1984+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGCATTACCTCTGGTGATGGTGTTCGCGGTGCCTTTCGCTGGTTA
CATAGGGCCGGCTATAGGGTTTTTCTACCCCAAGAATCGTCTCCCAGCAC
AATTTTGGACTCCGTGTCGACGGCTGGAAATGAAGGCATTACCTCTGGTG
ATGGTGTTCGCGGTGCCTTTCGCTGGTTACATAGGGCCGGCTATAGGGTT
TTTCTACCCCAAGAATCGTCTCCCAGCACAATTTTGGACTCCGTGTCGAC
GGCTGGAA