mRNA_H-elongata_contig89505.16449.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89505.16449.1
Unique NamemRNA_H-elongata_contig89505.16449.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig89505.16449.1 vs. uniprot
Match: D8LLJ7_ECTSI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ7_ECTSI)

HSP 1 Score: 347 bits (889), Expect = 1.540e-120
Identity = 163/176 (92.61%), Postives = 169/176 (96.02%), Query Frame = 1 
Query:    1 QAVARGNPVVFFDVSIGGAPAGRIKMELFKDTCPKTAENFRQFCTGEHRREGIPAGYKGSAFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFDLRHTGPGLLSMANSGPNTNGCQFFVTTAKADWLDGAHVVFGKVLDPSSMLTVRKIENVSTGANNKPRLTVVIHECGEL 528
            +AVARGNPVVFFDV+IGGAPAGRIKMELFKDTCPKTAENFR+FCTGEHR +GIP GYKG+ FHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFDLRHTGPGLLSMANSGPNTNGCQFFVTTAKA WLDG HVVFGKVLDP+SMLTVRKIENVSTG NNKPRLTVVI ECGEL
Sbjct:   10 EAVARGNPVVFFDVTIGGAPAGRIKMELFKDTCPKTAENFRRFCTGEHRHQGIPTGYKGAPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFDLRHTGPGLLSMANSGPNTNGCQFFVTTAKAAWLDGLHVVFGKVLDPASMLTVRKIENVSTGVNNKPRLTVVIQECGEL 185
[Close]
BLAST of mRNA_H-elongata_contig89505.16449.1 vs. uniprot
Match: A0A835Z972_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z972_9STRA)

HSP 1 Score: 294 bits (753), Expect = 8.260e-100
Identity = 133/176 (75.57%), Postives = 152/176 (86.36%), Query Frame = 1 
Query:    1 QAVARGNPVVFFDVSIGGAPAGRIKMELFKDTCPKTAENFRQFCTGEHRREGIPAGYKGSAFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFDLRHTGPGLLSMANSGPNTNGCQFFVTTAKADWLDGAHVVFGKVLDPSSMLTVRKIENVSTGANNKPRLTVVIHECGEL 528
            +AV RG+PVVF D++IGG   GRIK+ELF D CPKTAENFRQFCTGE +R+ +P GYKG+ FHRVIK FM+QGGDFVKGDGTGRMSIYGEKF DENFDLRHTGPGLLS ANSGPNTNGCQFF T AKA+WLDG H VFGKVLDP+SM  +RK+ENV+ G +N+PRL VV+ +CGEL
Sbjct:   10 EAVDRGSPVVFMDIAIGGTEMGRIKIELFADVCPKTAENFRQFCTGEFKRQNLPVGYKGAPFHRVIKGFMIQGGDFVKGDGTGRMSIYGEKFDDENFDLRHTGPGLLSSANSGPNTNGCQFFFTLAKAEWLDGKHTVFGKVLDPASMNVLRKVENVTVGTHNRPRLPVVVSQCGEL 185
[Close]
BLAST of mRNA_H-elongata_contig89505.16449.1 vs. uniprot
Match: A0A485LRW0_9STRA (Peptidyl-prolyl cis-trans isomerase n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A485LRW0_9STRA)

HSP 1 Score: 287 bits (735), Expect = 4.120e-97
Identity = 132/176 (75.00%), Postives = 150/176 (85.23%), Query Frame = 1 
Query:    1 QAVARGNPVVFFDVSIGGAPAGRIKMELFKDTCPKTAENFRQFCTGEHRREGIPAGYKGSAFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFDLRHTGPGLLSMANSGPNTNGCQFFVTTAKADWLDGAHVVFGKVLDPSSMLTVRKIENVSTGANNKPRLTVVIHECGEL 528
            +A+ +GN VVFFDV++GGAP GRI+MELFK+ CPKT ENFRQFCTGE+RR  +P GYK S FHRVIKDFM+QGGDF+KGDGTGRMSIYG+KFADEN  LRHT  GLLSMANSGP TNGCQFF+T    DWLDG HVVFGK+LD +S+L +RKIE+V TGANNKPR  VVI ECGEL
Sbjct:    7 EALRKGNVVVFFDVALGGAPLGRIRMELFKNECPKTVENFRQFCTGEYRRNELPVGYKASTFHRVIKDFMVQGGDFLKGDGTGRMSIYGDKFADENLTLRHTEAGLLSMANSGPGTNGCQFFITCGPCDWLDGKHVVFGKLLDSASLLVMRKIESVPTGANNKPRTPVVITECGEL 182
[Close]
BLAST of mRNA_H-elongata_contig89505.16449.1 vs. uniprot
Match: A0A067CUM4_SAPPC (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CUM4_SAPPC)

HSP 1 Score: 286 bits (731), Expect = 1.680e-96
Identity = 132/176 (75.00%), Postives = 150/176 (85.23%), Query Frame = 1 
Query:    1 QAVARGNPVVFFDVSIGGAPAGRIKMELFKDTCPKTAENFRQFCTGEHRREGIPAGYKGSAFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFDLRHTGPGLLSMANSGPNTNGCQFFVTTAKADWLDGAHVVFGKVLDPSSMLTVRKIENVSTGANNKPRLTVVIHECGEL 528
            +AV RGNPVVFFDV++G AP GRIKMELFK  CPKT ENFRQFCTGE+RR  +P GYKGS FHRVI DFM+QGGDF+KGDGTGRMSIYG+KFADE+F  +HT PGLLSMANSG +TNGCQFF+T A  DWLDG HVVFGK+LDP+S+L +RKIE+V TGA NKP+  V I ECGEL
Sbjct:    7 EAVRRGNPVVFFDVALGNAPLGRIKMELFKRECPKTVENFRQFCTGEYRRGDMPTGYKGSHFHRVIPDFMIQGGDFLKGDGTGRMSIYGDKFADESFAYKHTEPGLLSMANSGVDTNGCQFFITCAPCDWLDGKHVVFGKLLDPASLLVMRKIESVQTGAANKPKTPVTITECGEL 182
[Close]
BLAST of mRNA_H-elongata_contig89505.16449.1 vs. uniprot
Match: A0A7S3RA41_DUNTE (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3RA41_DUNTE)

HSP 1 Score: 285 bits (730), Expect = 2.380e-96
Identity = 129/169 (76.33%), Postives = 146/169 (86.39%), Query Frame = 1 
Query:   19 NPVVFFDVSIGGAPAGRIKMELFKDTCPKTAENFRQFCTGEHRREGIPAGYKGSAFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFDLRHTGPGLLSMANSGPNTNGCQFFVTTAKADWLDGAHVVFGKVLDPSSMLTVRKIENVSTGANNKPRLTVVIHECGE 525
            NPVVFFDV+IGG PAGRIKMELF D CPKT ENFRQFCTGEHRR+G+P GYKGS+FHRVIK+FM+QGGDF+KGDGTG  SIYG +FADENF  +HTGPGLLSMANSGPN+NGCQFF+T AK DW+D  HVVFG+V++   ML VRKIENV+TG NNKP L  +I ECGE
Sbjct:   14 NPVVFFDVTIGGMPAGRIKMELFADVCPKTCENFRQFCTGEHRRQGLPVGYKGSSFHRVIKEFMIQGGDFLKGDGTGSTSIYGSRFADENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKTDWIDNKHVVFGRVIE-DGMLVVRKIENVATGKNNKPNLPCIITECGE 181
[Close]
BLAST of mRNA_H-elongata_contig89505.16449.1 vs. uniprot
Match: K8YRK9_NANGC (Peptidyl-prolyl cis-trans isomerase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRK9_NANGC)

HSP 1 Score: 284 bits (726), Expect = 8.440e-96
Identity = 134/176 (76.14%), Postives = 146/176 (82.95%), Query Frame = 1 
Query:    1 QAVARGNPVVFFDVSIGGAPAGRIKMELFKDTCPKTAENFRQFCTGEHRREGIPAGYKGSAFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFDLRHTGPGLLSMANSGPNTNGCQFFVTTAKADWLDGAHVVFGKVLDPSSMLTVRKIENVSTGANNKPRLTVVIHECGEL 528
            +AV RGNPVVF DVSI   PAGRIKMELFKD  PKT ENFRQFCTGE+R  G+P GYKGS FHRVIKDFM+QGGDF+KGDG+G  SIYG+KFADENFDLRHTGPGLLSMANSGPNTNGCQFF+T  K +WLDG HVVFGKVLDP+SMLTVRK+EN         RL V + ECGEL
Sbjct:    8 EAVNRGNPVVFLDVSIANRPAGRIKMELFKDVVPKTVENFRQFCTGEYRESGLPLGYKGSPFHRVIKDFMIQGGDFMKGDGSGLKSIYGDKFADENFDLRHTGPGLLSMANSGPNTNGCQFFITCDKCEWLDGKHVVFGKVLDPASMLTVRKVENTDV-----KRLKVEVTECGEL 178
[Close]
BLAST of mRNA_H-elongata_contig89505.16449.1 vs. uniprot
Match: A0A482RTU9_9ARCH (Peptidylprolyl isomerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTU9_9ARCH)

HSP 1 Score: 281 bits (720), Expect = 7.940e-95
Identity = 129/175 (73.71%), Postives = 145/175 (82.86%), Query Frame = 1 
Query:    4 AVARGNPVVFFDVSIGGAPAGRIKMELFKDTCPKTAENFRQFCTGEHRREGIPAGYKGSAFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFDLRHTGPGLLSMANSGPNTNGCQFFVTTAKADWLDGAHVVFGKVLDPSSMLTVRKIENVSTGANNKPRLTVVIHECGEL 528
            A+ RGNPVVFFDVSIGG  AGRI++ELF D CPKTAENFRQFC GE+RR  +P GYK   FHRVIK FM+QGGDF +GDGTG++SIYG  F DENF LRHTG GLLSMANSGPNTNGCQFF+T  K DWLDG HVVFGKVLD +S+L VRKIENV +G N+KP+L V I +CGEL
Sbjct:    8 AIERGNPVVFFDVSIGGVAAGRIRIELFADVCPKTAENFRQFCCGEYRRNTLPVGYKACPFHRVIKGFMIQGGDFERGDGTGKLSIYGSSFPDENFVLRHTGAGLLSMANSGPNTNGCQFFITCGKCDWLDGKHVVFGKVLDDASLLVVRKIENVPSGPNDKPKLPVTIEQCGEL 182
[Close]
BLAST of mRNA_H-elongata_contig89505.16449.1 vs. uniprot
Match: A0A7S2BCB3_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BCB3_9STRA)

HSP 1 Score: 281 bits (719), Expect = 2.090e-94
Identity = 128/177 (72.32%), Postives = 151/177 (85.31%), Query Frame = 1 
Query:    1 QAVARGNPVVFFDVSIGGAPAGRIKMELFKDTCPKTAENFRQFCTGEHRREGIPAGYKGSAFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFDLRHTGPGLLSMANSGPNTNGCQFFVTTAKADWLDGAHVVFGKVLDPSSMLTVRKIENVSTGA-NNKPRLTVVIHECGEL 528
            +AV RGNPVVFFD++IGG PAGRIKMELF D CP+TAENFR+FCTGE RR   P GYK S FHR+IK+FM+QGGDF+K DGTGRMSIYGE+F DENF+LRH+ PGLLSMANSGPNTNGCQFF+T AK +WLDG HVVFGKVLDP+S++ +RK ENV     +NKP+L V++ +CGEL
Sbjct:   24 EAVERGNPVVFFDMTIGGVPAGRIKMELFADECPRTAENFRKFCTGEFRRSNHPVGYKDSPFHRIIKEFMIQGGDFLKQDGTGRMSIYGERFDDENFNLRHSAPGLLSMANSGPNTNGCQFFLTCAKCEWLDGKHVVFGKVLDPASLMVLRKCENVQVEPKSNKPKLPVIVAQCGEL 200
[Close]
BLAST of mRNA_H-elongata_contig89505.16449.1 vs. uniprot
Match: A0A1Y1XRS4_9FUNG (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XRS4_9FUNG)

HSP 1 Score: 279 bits (714), Expect = 4.790e-94
Identity = 128/170 (75.29%), Postives = 147/170 (86.47%), Query Frame = 1 
Query:   19 NPVVFFDVSIGGAPAGRIKMELFKDTCPKTAENFRQFCTGEHRREGIPAGYKGSAFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFDLRHTGPGLLSMANSGPNTNGCQFFVTTAKADWLDGAHVVFGKVLDPSSMLTVRKIENVSTGANNKPRLTVVIHECGEL 528
            NPVVFFD+SIGG PAGR+KMELFKD  PKTAENFRQ CTGE+R+ G+P GYK   FHRVIKDFM+QGGDFVKGDGTG +SIYGE F DE+F L+H+GPGLLSMANSGPNTNGCQFF+T AK D+LDG HVVFGK++D   +LT+RKIENV TG NN+P+L VVI ECGE+
Sbjct:    6 NPVVFFDISIGGQPAGRMKMELFKDAVPKTAENFRQLCTGEYRKNGVPQGYKNCTFHRVIKDFMVQGGDFVKGDGTGMLSIYGESFEDESFTLKHSGPGLLSMANSGPNTNGCQFFITCAKCDFLDGKHVVFGKLVD--GLLTLRKIENVMTGPNNRPKLPVVITECGEM 173
[Close]
BLAST of mRNA_H-elongata_contig89505.16449.1 vs. uniprot
Match: A0A7S2DPX7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DPX7_9STRA)

HSP 1 Score: 278 bits (712), Expect = 1.610e-93
Identity = 128/177 (72.32%), Postives = 149/177 (84.18%), Query Frame = 1 
Query:    1 QAVARGNPVVFFDVSIGGAPAGRIKMELFKDTCPKTAENFRQFCTGEHRREGIPAGYKGSAFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFDLRHTGPGLLSMANSGPNTNGCQFFVTTAKADWLDGAHVVFGKVLDPSSMLTVRKIENVSTGAN-NKPRLTVVIHECGEL 528
            +AV RGNPVVFFD++IGG PAGRIKMELF D CPKTAENFRQFCTGE RR   P GYKGS FHR+I++FM+Q GDF+K DGTGR+SIYGEKF DE+F LRH  PGLLSMANSGPNTNGCQFF+T A+ +WLDG HVVFGKVLDP+S++ +RKIENV      +KP+L V+I +CGEL
Sbjct:   12 EAVERGNPVVFFDITIGGVPAGRIKMELFADECPKTAENFRQFCTGEFRRANHPVGYKGSPFHRIIREFMIQAGDFLKQDGTGRISIYGEKFEDESFSLRHNEPGLLSMANSGPNTNGCQFFLTCARCEWLDGKHVVFGKVLDPASLMVLRKIENVQVDPKTSKPKLPVLIAQCGEL 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89505.16449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLJ7_ECTSI1.540e-12092.61Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca... [more]
A0A835Z972_9STRA8.260e-10075.57Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
A0A485LRW0_9STRA4.120e-9775.00Peptidyl-prolyl cis-trans isomerase n=5 Tax=Aphano... [more]
A0A067CUM4_SAPPC1.680e-9675.00Peptidyl-prolyl cis-trans isomerase n=2 Tax=Saprol... [more]
A0A7S3RA41_DUNTE2.380e-9676.33Peptidyl-prolyl cis-trans isomerase n=1 Tax=Dunali... [more]
K8YRK9_NANGC8.440e-9676.14Peptidyl-prolyl cis-trans isomerase n=3 Tax=Monodo... [more]
A0A482RTU9_9ARCH7.940e-9573.71Peptidylprolyl isomerase n=1 Tax=archaeon TaxID=19... [more]
A0A7S2BCB3_9STRA2.090e-9472.32Peptidyl-prolyl cis-trans isomerase n=1 Tax=Floren... [more]
A0A1Y1XRS4_9FUNG4.790e-9475.29Peptidyl-prolyl cis-trans isomerase n=1 Tax=Basidi... [more]
A0A7S2DPX7_9STRA1.610e-9372.32Peptidyl-prolyl cis-trans isomerase n=1 Tax=Dictyo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89505contigH-elongata_contig89505:383..2371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score345.5
Seed ortholog evalue1.5e-92
Seed eggNOG ortholog2880.D8LLJ7
Preferred namePPIH
KEGG koko:K09567
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006457,GO:0006464,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016018,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0022607,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0033218,GO:0034641,GO:0036211,GO:0042277,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045069,GO:0045070,GO:0045292,GO:0046483,GO:0046540,GO:0048518,GO:0048524,GO:0050789,GO:0050792,GO:0065003,GO:0065007,GO:0070013,GO:0071001,GO:0071704,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:0140096,GO:1901360,GO:1901564,GO:1903900,GO:1903902,GO:1990904
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0879@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCyclophilin-type peptidyl-prolyl cis-trans isomerase
Ec32 orthologEc-04_005600.1
Exons4
Model size531
Cds size531
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89505.16449.1prot_H-elongata_contig89505.16449.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89505 383..2371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931295.1651819-CDS-H-elongata_contig89505:382..5351622931295.1651819-CDS-H-elongata_contig89505:382..535Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89505 383..535 +
1691679777.6484005-CDS-H-elongata_contig89505:382..5351691679777.6484005-CDS-H-elongata_contig89505:382..535Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89505 383..535 +
1622931295.1878684-CDS-H-elongata_contig89505:1252..14061622931295.1878684-CDS-H-elongata_contig89505:1252..1406Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89505 1253..1406 +
1691679777.6661663-CDS-H-elongata_contig89505:1252..14061691679777.6661663-CDS-H-elongata_contig89505:1252..1406Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89505 1253..1406 +
1622931295.2036912-CDS-H-elongata_contig89505:1626..17391622931295.2036912-CDS-H-elongata_contig89505:1626..1739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89505 1627..1739 +
1691679777.6772277-CDS-H-elongata_contig89505:1626..17391691679777.6772277-CDS-H-elongata_contig89505:1626..1739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89505 1627..1739 +
1622931295.226319-CDS-H-elongata_contig89505:2260..23711622931295.226319-CDS-H-elongata_contig89505:2260..2371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89505 2261..2371 +
1691679777.6879172-CDS-H-elongata_contig89505:2260..23711691679777.6879172-CDS-H-elongata_contig89505:2260..2371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89505 2261..2371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89505.16449.1

>prot_H-elongata_contig89505.16449.1 ID=prot_H-elongata_contig89505.16449.1|Name=mRNA_H-elongata_contig89505.16449.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp
QAVARGNPVVFFDVSIGGAPAGRIKMELFKDTCPKTAENFRQFCTGEHRR
EGIPAGYKGSAFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFDLR
HTGPGLLSMANSGPNTNGCQFFVTTAKADWLDGAHVVFGKVLDPSSMLTV
RKIENVSTGANNKPRLTVVIHECGEL*
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mRNA from alignment at H-elongata_contig89505:383..2371+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89505.16449.1 ID=mRNA_H-elongata_contig89505.16449.1|Name=mRNA_H-elongata_contig89505.16449.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1989bp|location=Sequence derived from alignment at H-elongata_contig89505:383..2371+ (Himanthalia elongata Himel1 dioecious)
CAGGCCGTTGCTCGAGGAAATCCCGTGGTGTTCTTCGACGTCTCCATCGG
GGGCGCCCCGGCAGGCCGCATCAAGATGGAGCTCTTTAAGGACACCTGTC
CCAAGACAGCCGAAAACTTCAGGCAATTCTGCACGGGGGAGCACCGCCGC
GAGGTGCACGGGGACGTGCCACAATTAGTTGTTCGTAAGGATAAATTCAT
AAATGAACAAAAAAACGATCTTTGCACGAAAAACTCGGTGTAGAGGTTGT
GTACCTGCAGCGCCTGGGATGGTCAGTATCCATACGAGTGGAAGTTGTCC
ACGCACCACGTAGGCCATATCAATATCGATTAATAGTTGCCAGCAGCCGG
CTCGCTGGATAAGGAATCATAATTGAGGGGGGGGGGGGGCGGACTCCGCG
CCTCCACCGCGTGAAGGATGCGACGGTCTGATGTAACTTGACAGTTGAAC
CCCAAAGGTCGCAGCAAGTAGTTCGTGCTGCAGGCGTTCTTCCTTGGGAC
AGTCCTTGACGCCTCTAAAGATAGCGTGTCGAGTCCTCGCGATCCGCAGT
TGTGCCCTACCCCCCCCCCCCCACCCTTCGACCTTTTGTGTGGGTATATT
GCTTCGGCTGTCACGCCTGTCAAACCAGTCCTTGCCGACCGAGTGCAGCG
GCCGACCACGATTGTAGTGAAAAAGCCCTAGGTATTACGCGTTGTGGTCG
TCGAAAGAATCGAGAACCGTGTCGCGTAGTTTGAAGCGGAACTCTGCCCA
GACGCGAGTAAGGCTCCAAGCACGCACGCACATACCTTGATGATTCAGAG
AATAGTTCAAAATTTTGGAAGTGATCGAGTGGGGGAGGGTGCTGACCGCC
GCGTTTAAACGCTGCGACAGGGCATACCGGCGGGGTACAAGGGGTCAGCG
TTTCATCGAGTAATCAAGGATTTCATGCTGCAGGGGGGAGACTTTGTGAA
GGGGGACGGGACGGGAAGGATGAGCATCTACGGGGAAAAATTCGCAGACG
AGAACTTCGACCTGCGTCACACAGGTGACCAAACGGCGACAACCTCATAT
AAGGCTCTATATCTTATCTAAGTCTGTGTATTTTTTCTCCCTCTTGACCT
CTCGATGGATGGATGCAAATCCTCGGAATGCATGGGATGCTCGGCGTGAA
AATTCTCCAGCCGCTTCCTTGAGATCACTGTGCTCGCCTTACAAAAGAAA
GAGCGCCTGATTACGGTGTCGAGCGTTTTCGCGCCATTTCACAGGGCCTG
GTCTTCTGTCGATGGCAAATAGCGGACCTAACACGAACGGGTGCCAGTTT
TTCGTTACGACGGCGAAGGCGGACTGGCTCGACGGCGCCCACGTCGTTTT
TGGGAAGGTAATATTAACTAGCCTAAAAAAAAAAGACTGCGTGAACCGTT
AGCAGACGGGCCGTCAGAGCAAGGCCCGAATCGATATAGCAGGTTCGTGG
CCGAGTGGGCCGGATGGCTTGCCGGTTGGAAAAAAGTGATCCGTCGGTGT
TTAGAGAGGGACAAGCATAATAGAGAGCTCAACCTGCTTTCACCCCTATG
GGACTCGACCTGATTTTTTACATTCTAATTTCAATATAAAACTTGAAATC
CAGTTCTAGGAGAGTTAAGGCGCCCAGTAGAACGATAACATACCGTGCGT
CACATTTAACACTGCGCGCACGGTTTGGAATATATCGAACGTCGGAAGCG
TTTTCGACCCCCAGCTTTCTTCGAGAATCGCCTGATATAGCACCTCCTCG
CATCCCCAAGCCCCCCTCTCCCGACACAATTGATGGCCTTGAAGCGTGTT
CGTCCTCGCGCATACACCGGGGGGTATATCCAACGCATTCCTCCCGTCGC
TTGTGTGTTTCTTGTCCTGTGCCAGCAGGTATTGGACCCCTCTTCCATGC
TGACGGTACGAAAGATAGAAAACGTCTCGACAGGGGCGAACAACAAGCCC
CGACTCACCGTTGTCATCCATGAGTGTGGAGAGCTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig89505:383..2371+

>mRNA_H-elongata_contig89505.16449.1 ID=mRNA_H-elongata_contig89505.16449.1|Name=mRNA_H-elongata_contig89505.16449.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1062bp|location=Sequence derived from alignment at H-elongata_contig89505:383..2371+ (Himanthalia elongata Himel1 dioecious)
CAGGCCGTTGCTCGAGGAAATCCCGTGGTGTTCTTCGACGTCTCCATCGG
GGGCGCCCCGGCAGGCCGCATCAAGATGGAGCTCTTTAAGGACACCTGTC
CCAAGACAGCCGAAAACTTCAGGCAATTCTGCACGGGGGAGCACCGCCGC
GAGCAGGCCGTTGCTCGAGGAAATCCCGTGGTGTTCTTCGACGTCTCCAT
CGGGGGCGCCCCGGCAGGCCGCATCAAGATGGAGCTCTTTAAGGACACCT
GTCCCAAGACAGCCGAAAACTTCAGGCAATTCTGCACGGGGGAGCACCGC
CGCGAGGGCATACCGGCGGGGTACAAGGGGTCAGCGTTTCATCGAGTAAT
CAAGGATTTCATGCTGCAGGGGGGAGACTTTGTGAAGGGGGACGGGACGG
GAAGGATGAGCATCTACGGGGAAAAATTCGCAGACGAGAACTTCGACCTG
CGTCACACAGGGCATACCGGCGGGGTACAAGGGGTCAGCGTTTCATCGAG
TAATCAAGGATTTCATGCTGCAGGGGGGAGACTTTGTGAAGGGGGACGGG
ACGGGAAGGATGAGCATCTACGGGGAAAAATTCGCAGACGAGAACTTCGA
CCTGCGTCACACAGGGCCTGGTCTTCTGTCGATGGCAAATAGCGGACCTA
ACACGAACGGGTGCCAGTTTTTCGTTACGACGGCGAAGGCGGACTGGCTC
GACGGCGCCCACGTCGTTTTTGGGAAGGGCCTGGTCTTCTGTCGATGGCA
AATAGCGGACCTAACACGAACGGGTGCCAGTTTTTCGTTACGACGGCGAA
GGCGGACTGGCTCGACGGCGCCCACGTCGTTTTTGGGAAGGTATTGGACC
CCTCTTCCATGCTGACGGTACGAAAGATAGAAAACGTCTCGACAGGGGCG
AACAACAAGCCCCGACTCACCGTTGTCATCCATGAGTGTGGAGAGCTGTA
AGTATTGGACCCCTCTTCCATGCTGACGGTACGAAAGATAGAAAACGTCT
CGACAGGGGCGAACAACAAGCCCCGACTCACCGTTGTCATCCATGAGTGT
GGAGAGCTGTAA
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