mRNA_H-elongata_contig89448.16445.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89448.16445.1
Unique NamemRNA_H-elongata_contig89448.16445.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig89448.16445.1 vs. uniprot
Match: D7FMU9_ECTSI (Putative serine-threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMU9_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 2.050e-51
Identity = 80/109 (73.39%), Postives = 94/109 (86.24%), Query Frame = 1 
Query:    1 MTYDQCLKEVGLLKDLTNPNIVKLDTCFLDKNVLWVVMEWVDGGDLKGVISRTKRARERLPELTVWCYFTQICDALLYMHSRRIMHRDLKPANILVCMDGTVKLGDLGL 327
            MTY+ C+KEVGLLK+L +PNIVKL TCFLD N LWVVM+W+DGGDLKGV+ RTK+A +RL E+TVW YFTQICDALL+MH  RI+HRD+KPAN+ V  DG VKLGDLGL
Sbjct:  211 MTYETCVKEVGLLKNLASPNIVKLHTCFLDHNALWVVMDWMDGGDLKGVLRRTKQAGQRLDEITVWGYFTQICDALLHMHGERIIHRDVKPANVFVSRDGIVKLGDLGL 319
[Close]
BLAST of mRNA_H-elongata_contig89448.16445.1 vs. uniprot
Match: A0A6H5KNN9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNN9_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 3.180e-40
Identity = 78/155 (50.32%), Postives = 92/155 (59.35%), Query Frame = 1 
Query:    1 MTYDQCLKEVGLLKDLTNPNIVKLDTCFLDKNVLWVVMEWVDGGDLKG----------------------------------------------VISRTKRARERLPELTVWCYFTQICDALLYMHSRRIMHRDLKPANILVCMDGTVKLGDLGL 327
            MTY+ C+KEVGLLK+L +PNIVKL TCFL  N LWVVM+W+DGGDLKG                                              V+ RTK++  RL E+TVW YFTQICDALL+MH  RI+HRD+KPAN+ V  DG VKLGDLGL
Sbjct:  466 MTYETCVKEVGLLKNLASPNIVKLHTCFLGHNALWVVMDWMDGGDLKGTEVSVVLFEGVAGMGMSWRQVIAVELRQYTDPTSCSTPKTTTAASGVLRRTKQSGRRLDEITVWGYFTQICDALLHMHGERIIHRDIKPANVFVSRDGIVKLGDLGL 620
[Close]
BLAST of mRNA_H-elongata_contig89448.16445.1 vs. uniprot
Match: A0A2U3YMX2_LEPWE (serine/threonine-protein kinase Nek6-like n=1 Tax=Leptonychotes weddellii TaxID=9713 RepID=A0A2U3YMX2_LEPWE)

HSP 1 Score: 122 bits (307), Expect = 1.070e-33
Identity = 55/104 (52.88%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:   16 CLKEVGLLKDLTNPNIVKLDTCFLDKNVLWVVMEWVDGGDLKGVISRTKRARERLPELTVWCYFTQICDALLYMHSRRIMHRDLKPANILVCMDGTVKLGDLGL 327
            C+KE+GLLK L +PNI+K    F++ N L +V+E  D GDL  +I   K+ +  +PE TVW YF Q+C A+ +MHSRR+MHRD+KPAN+ +   G VKLGDLGL
Sbjct:   10 CVKEIGLLKQLNHPNIIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFAQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGL 113
[Close]
BLAST of mRNA_H-elongata_contig89448.16445.1 vs. uniprot
Match: A0A553RKY6_9TELE (Protein kinase domain-containing protein (Fragment) n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553RKY6_9TELE)

HSP 1 Score: 127 bits (319), Expect = 2.320e-33
Identity = 56/104 (53.85%), Postives = 76/104 (73.08%), Query Frame = 1 
Query:   16 CLKEVGLLKDLTNPNIVKLDTCFLDKNVLWVVMEWVDGGDLKGVISRTKRARERLPELTVWCYFTQICDALLYMHSRRIMHRDLKPANILVCMDGTVKLGDLGL 327
            C+KE+ LLK L +PN++K    F+++NVL +V+E  D GDL  +I+  K+ +  +PE TVW YF Q+C AL +MHSRRIMHRD+KPAN+ +   G VKLGDLGL
Sbjct:  166 CIKEIDLLKQLNHPNVIKYHASFIEENVLNIVLELADAGDLSQMITHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRIMHRDIKPANVFITATGVVKLGDLGL 269
[Close]
BLAST of mRNA_H-elongata_contig89448.16445.1 vs. uniprot
Match: A0A1B6EH06_9HEMI (Protein kinase domain-containing protein n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6EH06_9HEMI)

HSP 1 Score: 125 bits (314), Expect = 5.010e-33
Identity = 55/104 (52.88%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:   16 CLKEVGLLKDLTNPNIVKLDTCFLDKNVLWVVMEWVDGGDLKGVISRTKRARERLPELTVWCYFTQICDALLYMHSRRIMHRDLKPANILVCMDGTVKLGDLGL 327
            C+KEV +L++L +PNI+K    F+D N L +V+E  D GDL  +I   +R R  +PE T+W YF Q+C AL YMHS+R+MHRD+KP NI + + G VKLGDLGL
Sbjct:   70 CMKEVKILQELVHPNIIKYYASFIDNNELTIVLELADAGDLSRMIKHFRRQRRLIPEKTIWKYFVQVCSALDYMHSKRVMHRDIKPENIFITVQGNVKLGDLGL 173
[Close]
BLAST of mRNA_H-elongata_contig89448.16445.1 vs. uniprot
Match: A0A5N4E7T5_CAMDR (Serine/threonine-protein kinase Nek6 n=1 Tax=Camelus dromedarius TaxID=9838 RepID=A0A5N4E7T5_CAMDR)

HSP 1 Score: 122 bits (306), Expect = 7.950e-33
Identity = 55/104 (52.88%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:   16 CLKEVGLLKDLTNPNIVKLDTCFLDKNVLWVVMEWVDGGDLKGVISRTKRARERLPELTVWCYFTQICDALLYMHSRRIMHRDLKPANILVCMDGTVKLGDLGL 327
            C+KE+GLLK L +PNI+K    F++ N L +V+E  D GDL  +I   K+ +  +PE TVW YF Q+C A+ +MHSRR+MHRD+KPAN+ +   G VKLGDLGL
Sbjct:   68 CVKEIGLLKQLNHPNIIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGIVKLGDLGL 171
[Close]
BLAST of mRNA_H-elongata_contig89448.16445.1 vs. uniprot
Match: A0A8B6FJ58_MYTGA (NIMA (Never in mitosis gene a)-related kinase n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6FJ58_MYTGA)

HSP 1 Score: 122 bits (306), Expect = 1.450e-32
Identity = 54/104 (51.92%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:   16 CLKEVGLLKDLTNPNIVKLDTCFLDKNVLWVVMEWVDGGDLKGVISRTKRARERLPELTVWCYFTQICDALLYMHSRRIMHRDLKPANILVCMDGTVKLGDLGL 327
            C+KE+GLLK L +PN++K  + F++ N L +V+E  D GDL  +I   K+    +PE ++W YF QIC AL +MHS+RIMHRD+KPAN+ +   G VKLGDLGL
Sbjct:   76 CIKEIGLLKQLNHPNVIKYLSSFIENNELNIVLELADAGDLSRMIKHFKKQNRLIPEKSIWKYFIQICSALEHMHSKRIMHRDIKPANVFITGQGVVKLGDLGL 179
[Close]
BLAST of mRNA_H-elongata_contig89448.16445.1 vs. uniprot
Match: A0A7R9V423_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V423_9CHLO)

HSP 1 Score: 124 bits (312), Expect = 1.670e-32
Identity = 55/106 (51.89%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:   10 DQCLKEVGLLKDLTNPNIVKLDTCFLDKNVLWVVMEWVDGGDLKGVISRTKRARERLPELTVWCYFTQICDALLYMHSRRIMHRDLKPANILVCMDGTVKLGDLGL 327
            ++CL+EV LL  L++PNI+++   F+D N L ++ EW   GDLK +I +T  A++ L E ++W +F QI DALLYMH +RIMHRD+KPAN+LV  +G +K+GDLGL
Sbjct:   85 ERCLQEVKLLSKLSHPNIIQMLDAFIDDNQLIIIFEWAPAGDLKRLIKKTAEAKKTLDEPSIWMFFAQITDALLYMHQQRIMHRDIKPANVLVGANGALKIGDLGL 190
[Close]
BLAST of mRNA_H-elongata_contig89448.16445.1 vs. uniprot
Match: A0A8C4TC06_ERPCA (NIMA related kinase 6 n=4 Tax=Polypteridae TaxID=8289 RepID=A0A8C4TC06_ERPCA)

HSP 1 Score: 124 bits (310), Expect = 2.340e-32
Identity = 56/104 (53.85%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:   16 CLKEVGLLKDLTNPNIVKLDTCFLDKNVLWVVMEWVDGGDLKGVISRTKRARERLPELTVWCYFTQICDALLYMHSRRIMHRDLKPANILVCMDGTVKLGDLGL 327
            C+KE+ LLK L +PNI+K    F++ NVL +V+E  D GDL  +I   K+ R  +PE TVW YF Q+C A+ +MHSRR+MHRD+KPAN+ +   G VKLGDLGL
Sbjct:   82 CIKEIDLLKQLNHPNIIKYLDSFIEDNVLNIVLELADAGDLSQMIKYFKKQRRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGAVKLGDLGL 185
[Close]
BLAST of mRNA_H-elongata_contig89448.16445.1 vs. uniprot
Match: A0A212CWS0_CEREH (NEK6 n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0A212CWS0_CEREH)

HSP 1 Score: 122 bits (306), Expect = 2.440e-32
Identity = 55/104 (52.88%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:   16 CLKEVGLLKDLTNPNIVKLDTCFLDKNVLWVVMEWVDGGDLKGVISRTKRARERLPELTVWCYFTQICDALLYMHSRRIMHRDLKPANILVCMDGTVKLGDLGL 327
            C+KE+GLLK L +PNI+K    F++ N L +V+E  D GDL  +I   K+ +  +PE TVW YF Q+C A+ +MHSRR+MHRD+KPAN+ +   G VKLGDLGL
Sbjct:   83 CVKEIGLLKQLNHPNIIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGIVKLGDLGL 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89448.16445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMU9_ECTSI2.050e-5173.39Putative serine-threonine protein kinase n=1 Tax=E... [more]
A0A6H5KNN9_9PHAE3.180e-4050.32Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A2U3YMX2_LEPWE1.070e-3352.88serine/threonine-protein kinase Nek6-like n=1 Tax=... [more]
A0A553RKY6_9TELE2.320e-3353.85Protein kinase domain-containing protein (Fragment... [more]
A0A1B6EH06_9HEMI5.010e-3352.88Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A5N4E7T5_CAMDR7.950e-3352.88Serine/threonine-protein kinase Nek6 n=1 Tax=Camel... [more]
A0A8B6FJ58_MYTGA1.450e-3251.92NIMA (Never in mitosis gene a)-related kinase n=2 ... [more]
A0A7R9V423_9CHLO1.670e-3251.89Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A8C4TC06_ERPCA2.340e-3253.85NIMA related kinase 6 n=4 Tax=Polypteridae TaxID=8... [more]
A0A212CWS0_CEREH2.440e-3252.88NEK6 n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89448contigH-elongata_contig89448:536..2637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.9
Seed ortholog evalue2.5e-42
Seed eggNOG ortholog2880.D7FMU9
KEGG koko:K08857,ko:K20876
KEGG TC1.I.1.1.3
KEGG Pathwayko04621,map04621
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0591@1,KOG0591@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size327
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89448.16445.1prot_H-elongata_contig89448.16445.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89448 536..2637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931294.7655904-CDS-H-elongata_contig89448:535..5621622931294.7655904-CDS-H-elongata_contig89448:535..562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89448 536..562 +
1691679777.458478-CDS-H-elongata_contig89448:535..5621691679777.458478-CDS-H-elongata_contig89448:535..562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89448 536..562 +
1622931294.783737-CDS-H-elongata_contig89448:1315..14301622931294.783737-CDS-H-elongata_contig89448:1315..1430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89448 1316..1430 +
1691679777.4784007-CDS-H-elongata_contig89448:1315..14301691679777.4784007-CDS-H-elongata_contig89448:1315..1430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89448 1316..1430 +
1622931294.80389-CDS-H-elongata_contig89448:2452..26371622931294.80389-CDS-H-elongata_contig89448:2452..2637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89448 2453..2637 +
1691679777.5005667-CDS-H-elongata_contig89448:2452..26371691679777.5005667-CDS-H-elongata_contig89448:2452..2637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89448 2453..2637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89448.16445.1

>prot_H-elongata_contig89448.16445.1 ID=prot_H-elongata_contig89448.16445.1|Name=mRNA_H-elongata_contig89448.16445.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
MTYDQCLKEVGLLKDLTNPNIVKLDTCFLDKNVLWVVMEWVDGGDLKGVI
SRTKRARERLPELTVWCYFTQICDALLYMHSRRIMHRDLKPANILVCMDG
TVKLGDLGL
back to top

mRNA from alignment at H-elongata_contig89448:536..2637+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89448.16445.1 ID=mRNA_H-elongata_contig89448.16445.1|Name=mRNA_H-elongata_contig89448.16445.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2102bp|location=Sequence derived from alignment at H-elongata_contig89448:536..2637+ (Himanthalia elongata Himel1 dioecious)
ATGACGTATGACCAGTGCCTCAAAGAGGTGAGCATAATGATGTCATGATG
ATGTCGTTGGCTTATTACCAGGACCTGCGGCTGGCGATGATTGATGATTG
ATGATTGATGATTTTGTCTGGGGAAAGGGGGGTTGGGGATGGGAGAAGTG
GTATCTTCGTTGCGGTTCTGGGTGGTCTCGGTCGGCTTGGCTGCACAAGG
CAACGAACGGTGAACTGTGAACGATCGGTCGCGGTGGGGCGATGCTTGTA
TAGAAGTAGAGAGACAGGACCGCTCACCGCTGAACGATAAATAAAGATAA
GAGGTTGTACAGTACAGTATTCAGGTAATGGATTTATTTTTAAAAAACAT
AAAAACTCATCCCAACCCTTTGCACATCCACACCTTTTTAGCACCGTGAG
AGGTGCAGTATTTAGTAATAGAGGTAGTAGTATTAGTATCGTATTATAAT
GTTTTAGAGGTAGTAGTAGTAGTAGTAGTATCGTATTATAATGTTTTATT
ATAATGTTTTATCAAGGGTGCCCAAGTATGACGAATGTCCAAGTACGTTA
TAAAGTATATAAATGTGAAGCTTCGAGAGAAGGAAATGGATTGGATGAGA
TGAGATGAGATGGGATGGCCGCCTTAAAGTGGCGATAGGCTGGCTGGGAG
GGGGTTCACCCCAACTTTCGCTGTCATTTTTTTTCTTCTTCTTTTTTCGT
CTTGTAATGTAATATAATGTTGGACCTGTCTGTAACCGCGCCTCTGACCT
GTTTGTGAACCTTTTCATGGCGTGGCGCAGGTGGGGCTGCTGAAAGACCT
GACGAACCCGAACATCGTGAAACTGGACACCTGCTTTCTGGACAAGAACG
TGCTATGGGTCGTAATGGAGTGGGTCGACGGGGGTGACTTAAAGGGTGCG
TTTACGGCACACGGAGGAAGACACGCTACGGGATCATGGGCAGTGTAGAC
CTCACCCGGCAAGGGCAGCCGGTGGGACGATAGGTCGACACAGCAAAATG
ATGTCGTGTCTGCCTGATGTGCTGAAAGAGTGAATGTTGAATGTTGATAT
ATATGTTGATATATATGTTGATATATATATATGTTGATATATATATATGT
TGATATATATGTTGATATATATATATTCCATCTCACGATGTGAAAGATGG
GGTAGATGGGGCTGCTGAATGGAGGCGAGGACCCAAGAGATGCTGATAAA
TTATATGTAATAATTATCTTAAGAGGCCGCACGATTGGGTATATATGATG
TCGCACGGAACGGGTTGCCATCCGCAGAAACGCCTCAAATATATACTAAT
AATAGTACTTATTATTACTACTCCGTCAGGGATATTCCTAAGCAAATTTT
TGCCTGGGGGTATCATGCACATATATCGCTGTGTCTATGGGGTGTGCGAA
CGGCGCTTATGCCTTCGGTCGGAGCTCAAAAGCTCTTCGCGATATTCGGG
GTTAGGAGTCGGGGTTAGGTTCGCGCCCGCCGATTGAGTAACATTTGGCT
ACCCAATGTGTCCAGTTGTTGTTGTTGTTGTTGTCCAGTGTCGAATCAAC
CCGCGACGTGTCTGGTTCGGTCGTAGCAAACGCAAGGATGATTACCAGAA
GTTGGTACTTGTGCCTTCCTTGTGAGACGCAGCCTGGTCGCCGAAAACCC
AGGACATGATCAGCCCCGATATTTTTGAGATGTGATATGTTAACGTTTTG
ATACGACACGCGTTTAACGGAAGTATCCCCCCCCCCCCCCCCCCCTTTTT
TGGATTATGACGGTTTTAATGCCGAAGGGGCGAGGAGACGTAGGCCACCG
TGTCACTCTCGACGGCAGCCCCGCTTCTTTTCCTCCCAGTTCGATTATTA
AAATAAATTATCTTCCTCCCCGCCGTCTGTTCCATCCGTCCGTCTTACGG
GGGCGGCATTTTGGCAGGCGTTATTTCGAGGACGAAACGCGCGAGAGAGC
GGCTCCCGGAGCTCACGGTCTGGTGCTACTTCACACAGATCTGCGACGCG
CTGCTGTACATGCACAGCCGGCGGATCATGCACCGAGATCTCAAGCCGGC
CAACATCCTGGTATGCATGGACGGCACCGTCAAGCTCGGAGACCTTGGGC
TC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig89448:536..2637+

>mRNA_H-elongata_contig89448.16445.1 ID=mRNA_H-elongata_contig89448.16445.1|Name=mRNA_H-elongata_contig89448.16445.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig89448:536..2637+ (Himanthalia elongata Himel1 dioecious)
ATGACGTATGACCAGTGCCTCAAAGAGATGACGTATGACCAGTGCCTCAA
AGAGGTGGGGCTGCTGAAAGACCTGACGAACCCGAACATCGTGAAACTGG
ACACCTGCTTTCTGGACAAGAACGTGCTATGGGTCGTAATGGAGTGGGTC
GACGGGGGTGACTTAAAGGGTGGGGCTGCTGAAAGACCTGACGAACCCGA
ACATCGTGAAACTGGACACCTGCTTTCTGGACAAGAACGTGCTATGGGTC
GTAATGGAGTGGGTCGACGGGGGTGACTTAAAGGGCGTTATTTCGAGGAC
GAAACGCGCGAGAGAGCGGCTCCCGGAGCTCACGGTCTGGTGCTACTTCA
CACAGATCTGCGACGCGCTGCTGTACATGCACAGCCGGCGGATCATGCAC
CGAGATCTCAAGCCGGCCAACATCCTGGTATGCATGGACGGCACCGTCAA
GCTCGGAGACCTTGGGCTCGCGTTATTTCGAGGACGAAACGCGCGAGAGA
GCGGCTCCCGGAGCTCACGGTCTGGTGCTACTTCACACAGATCTGCGACG
CGCTGCTGTACATGCACAGCCGGCGGATCATGCACCGAGATCTCAAGCCG
GCCAACATCCTGGTATGCATGGACGGCACCGTCAAGCTCGGAGACCTTGG
GCTC
back to top