prot_H-elongata_contig89430.16444.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig89430.16444.1
Unique Nameprot_H-elongata_contig89430.16444.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length72
Homology
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BLAST of mRNA_H-elongata_contig89430.16444.1 vs. uniprot
Match: D8LSF0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSF0_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 9.260e-28
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0 
Query:    1 GSGTCYLSYLVSMLIGELGVNHGVELSAKLLEHSARCIAAIDLKLGRKTDIQIIRGNGLHVVTDSGC 67
            GSGTCYLSYLVSML+GELGVNHGVEL+  LLEHSARCIA+ D +LGRKTDIQ++RGNGL V  + GC
Sbjct:   84 GSGTCYLSYLVSMLVGELGVNHGVELNEALLEHSARCIASTDDRLGRKTDIQVLRGNGLSVAVEPGC 150
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89430.16444.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSF0_ECTSI9.260e-2877.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.150coord: 1..67
e-value: 6.2E-7
score: 31.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89430contigH-elongata_contig89430:2191..2406 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89430.16444.1mRNA_H-elongata_contig89430.16444.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig89430 2191..2406 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig89430.16444.1 ID=prot_H-elongata_contig89430.16444.1|Name=mRNA_H-elongata_contig89430.16444.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
GSGTCYLSYLVSMLIGELGVNHGVELSAKLLEHSARCIAAIDLKLGRKTD
IQIIRGNGLHVVTDSGCVCWH*
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