mRNA_H-elongata_contig89430.16444.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89430.16444.1
Unique NamemRNA_H-elongata_contig89430.16444.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig89430.16444.1 vs. uniprot
Match: D8LSF0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSF0_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 9.260e-28
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 GSGTCYLSYLVSMLIGELGVNHGVELSAKLLEHSARCIAAIDLKLGRKTDIQIIRGNGLHVVTDSGC 201
            GSGTCYLSYLVSML+GELGVNHGVEL+  LLEHSARCIA+ D +LGRKTDIQ++RGNGL V  + GC
Sbjct:   84 GSGTCYLSYLVSMLVGELGVNHGVELNEALLEHSARCIASTDDRLGRKTDIQVLRGNGLSVAVEPGC 150
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89430.16444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSF0_ECTSI9.260e-2877.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89430contigH-elongata_contig89430:2191..2406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue3.8e-23
Seed eggNOG ortholog2880.D8LSF0
Preferred namePCMTD2
GOsGO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
EggNOG OGsCOG2518@1,KOG1661@2759
Ec32 ortholog descriptionProtein-L-isoaspartate(D-aspartate) O-methyltransferase
Ec32 orthologEc-21_003440.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931294.72058-CDS-H-elongata_contig89430:2190..24061622931294.72058-CDS-H-elongata_contig89430:2190..2406Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89430 2191..2406 -
1691679777.4434738-CDS-H-elongata_contig89430:2190..24061691679777.4434738-CDS-H-elongata_contig89430:2190..2406Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89430 2191..2406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89430.16444.1prot_H-elongata_contig89430.16444.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89430 2191..2406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89430.16444.1

>prot_H-elongata_contig89430.16444.1 ID=prot_H-elongata_contig89430.16444.1|Name=mRNA_H-elongata_contig89430.16444.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
GSGTCYLSYLVSMLIGELGVNHGVELSAKLLEHSARCIAAIDLKLGRKTD
IQIIRGNGLHVVTDSGCVCWH*
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mRNA from alignment at H-elongata_contig89430:2191..2406-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89430.16444.1 ID=mRNA_H-elongata_contig89430.16444.1|Name=mRNA_H-elongata_contig89430.16444.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig89430:2191..2406- (Himanthalia elongata Himel1 dioecious)
GGAAGCGGCACCTGCTACCTGTCGTACCTGGTATCGATGCTCATCGGCGA
GCTCGGCGTAAACCACGGCGTGGAGCTGTCGGCAAAACTGCTGGAACACT
CCGCCCGCTGCATCGCGGCGATCGACCTCAAGCTCGGTCGTAAGACAGAC
ATCCAGATCATCCGCGGCAACGGCTTGCACGTGGTGACAGACTCTGGGTG
CGTCTGCTGGCATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig89430:2191..2406-

>mRNA_H-elongata_contig89430.16444.1 ID=mRNA_H-elongata_contig89430.16444.1|Name=mRNA_H-elongata_contig89430.16444.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig89430:2191..2406- (Himanthalia elongata Himel1 dioecious)
GGAAGCGGCACCTGCTACCTGTCGTACCTGGTATCGATGCTCATCGGCGA
GCTCGGCGTAAACCACGGCGTGGAGCTGTCGGCAAAACTGCTGGAACACT
CCGCCCGCTGCATCGCGGCGATCGACCTCAAGCTCGGTCGTAAGACAGAC
ATCCAGATCATCCGCGGCAACGGCTTGCACGTGGTGACAGACTCTGGGTG
CGTCTGCTGGCATTAAGGAAGCGGCACCTGCTACCTGTCGTACCTGGTAT
CGATGCTCATCGGCGAGCTCGGCGTAAACCACGGCGTGGAGCTGTCGGCA
AAACTGCTGGAACACTCCGCCCGCTGCATCGCGGCGATCGACCTCAAGCT
CGGTCGTAAGACAGACATCCAGATCATCCGCGGCAACGGCTTGCACGTGG
TGACAGACTCTGGGTGCGTCTGCTGGCATTAA
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