mRNA_H-elongata_contig89423.16443.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89423.16443.1
Unique NamemRNA_H-elongata_contig89423.16443.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig89423.16443.1 vs. uniprot
Match: D7FIS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS0_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 1.620e-64
Identity = 108/150 (72.00%), Postives = 125/150 (83.33%), Query Frame = 1 
Query:    1 RTHSLPLVIILASRAISSRSFPPRDLLLPCALCIAGFALGVHSQTPEAFWDGTSVGVLASVLTAAYTMLLARAEPREAWRVTYVTNRNASVLLVPAAVYIGMGDPTYLAVEPFLLKDCDTMLLAIMATILPALAGVSTMWQAQAGLGATG 450
            R  +LP V ++   A+ SR+ PPRDLLLPC LC+ GF+LGV SQTPEAF DGTS+GV+AS+LTAAYT LLARAEPREAWRVTYVTNRNASV+LVP AVY+GMGDP   A +PFLLKD  T++LA MAT+LPA+AGV TMWQAQA LGA G
Sbjct:  134 RALTLPFVTVMG--AVGSRALPPRDLLLPCVLCMVGFSLGVQSQTPEAFADGTSMGVMASLLTAAYTRLLARAEPREAWRVTYVTNRNASVILVPVAVYVGMGDPNDFAGDPFLLKDGSTIILAAMATLLPAVAGVCTMWQAQARLGARG 281
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BLAST of mRNA_H-elongata_contig89423.16443.1 vs. uniprot
Match: A0A6H5KAP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAP8_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 9.880e-64
Identity = 109/150 (72.67%), Postives = 126/150 (84.00%), Query Frame = 1 
Query:    1 RTHSLPLVIILASRAISSRSFPPRDLLLPCALCIAGFALGVHSQTPEAFWDGTSVGVLASVLTAAYTMLLARAEPREAWRVTYVTNRNASVLLVPAAVYIGMGDPTYLAVEPFLLKDCDTMLLAIMATILPALAGVSTMWQAQAGLGATG 450
            R  +LP V ++   A+ SR+ PPRDLLLPC LC+ GF+LGV SQTPEAF DGTS+GV+AS+LTAAYT LLARAEPREAWRVTYVTNRNASV+LVP AVY+GMGDP   + EPFLLKD  T+LLA+MAT+LPA+AGV TMWQAQA LGA G
Sbjct:  383 RALTLPFVTVMG--AVGSRALPPRDLLLPCVLCVVGFSLGVQSQTPEAFADGTSMGVMASLLTAAYTRLLARAEPREAWRVTYVTNRNASVILVPVAVYVGMGDPNDFSGEPFLLKDGSTILLAVMATLLPAVAGVCTMWQAQARLGARG 530
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89423.16443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIS0_ECTSI1.620e-6472.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAP8_9PHAE9.880e-6472.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89423contigH-elongata_contig89423:661..2416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.9
Seed ortholog evalue2.5e-53
Seed eggNOG ortholog2880.D7FIS0
Preferred nameSLC35C1
KEGG koko:K15279
KEGG TC2.A.7.16
GOsGO:0000139,GO:0003674,GO:0005215,GO:0005338,GO:0005457,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006629,GO:0006810,GO:0008150,GO:0008152,GO:0008593,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0012505,GO:0015780,GO:0015783,GO:0015931,GO:0015932,GO:0016020,GO:0022857,GO:0023051,GO:0023057,GO:0030258,GO:0030259,GO:0031090,GO:0031984,GO:0036080,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045746,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0055085,GO:0065007,GO:0070085,GO:0071702,GO:0071704,GO:0071705,GO:0090480,GO:0098588,GO:0098791,GO:1901264,GO:1901505
EggNOG free text desc.GDP-fucose import into Golgi lumen
EggNOG OGsKOG1442@1,KOG1442@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_003170.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal peptide
Exons3
Model size450
Cds size450
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89423.16443.1prot_H-elongata_contig89423.16443.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89423 661..2416 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931294.6285162-CDS-H-elongata_contig89423:660..8801622931294.6285162-CDS-H-elongata_contig89423:660..880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89423 661..880 +
1691679777.4104242-CDS-H-elongata_contig89423:660..8801691679777.4104242-CDS-H-elongata_contig89423:660..880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89423 661..880 +
1622931294.6474752-CDS-H-elongata_contig89423:1412..15411622931294.6474752-CDS-H-elongata_contig89423:1412..1541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89423 1413..1541 +
1691679777.4223394-CDS-H-elongata_contig89423:1412..15411691679777.4223394-CDS-H-elongata_contig89423:1412..1541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89423 1413..1541 +
1622931294.6651773-CDS-H-elongata_contig89423:2315..24161622931294.6651773-CDS-H-elongata_contig89423:2315..2416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89423 2316..2416 +
1691679777.4316034-CDS-H-elongata_contig89423:2315..24161691679777.4316034-CDS-H-elongata_contig89423:2315..2416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89423 2316..2416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89423.16443.1

>prot_H-elongata_contig89423.16443.1 ID=prot_H-elongata_contig89423.16443.1|Name=mRNA_H-elongata_contig89423.16443.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
RTHSLPLVIILASRAISSRSFPPRDLLLPCALCIAGFALGVHSQTPEAFW
DGTSVGVLASVLTAAYTMLLARAEPREAWRVTYVTNRNASVLLVPAAVYI
GMGDPTYLAVEPFLLKDCDTMLLAIMATILPALAGVSTMWQAQAGLGATG
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mRNA from alignment at H-elongata_contig89423:661..2416+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89423.16443.1 ID=mRNA_H-elongata_contig89423.16443.1|Name=mRNA_H-elongata_contig89423.16443.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1756bp|location=Sequence derived from alignment at H-elongata_contig89423:661..2416+ (Himanthalia elongata Himel1 dioecious)
CGTACCCATTCACTCCCTCTCGTGATCATCCTCGCAAGCAGGGCAATCAG
CTCGCGCTCGTTTCCTCCACGCGACCTTCTCCTGCCCTGCGCTCTCTGTA
TCGCGGGGTTCGCGCTCGGGGTGCACTCTCAGACGCCTGAGGCATTCTGG
GACGGCACTTCGGTGGGCGTTTTGGCCAGCGTGCTGACGGCGGCGTACAC
GATGCTTTTGGCTCGTGCGGGTGAGTCGATTGCCGTGACTCCCCGTAAAT
ACGTTATTTTAAAATGCCTACTCTAATCGGTGGAACTCCTCGCTTCCCGG
GGATGGGGGTGGGGGTTAACCGATCGATTTTTGTCTGGAGACAGCTTTGC
GGACAGCGGAGAGAGCAGACGTGTTTGAAAATTCTGGACGTTTCGCCTCA
TTGCTTTGTGCCTTGTTTATTTATTTATTTATAATATATTTCGCCGGAGA
CGTTCGTTGGTATATATCTTGCGATGTCAGTGCTATTTCTTTTTTAAATA
AAAAGGGAAACAGGAACGAAAACGGATTTGTATCTCCGTCTAAAGGGTCT
GTTGCACTCGATTATTTTTACGTCTAAGTAGTCTTACGGCACCAACCGGG
GTTACACTACTGAGGTATACTGGAGTAGTATTTTTGCTGTGTATGTACTG
CATGTGTGCGGAGGTCCCCCCCCTAATTACCTGACTAATTGTCTGACTAA
TTGACTTCCTAATTGTCTGACTAATTGCCTTCCTATTTGTCTGATTAATT
AGAGCCGCGAGAGGCGTGGAGGGTGACGTACGTGACGAATCGAAACGCCT
CCGTGCTGCTCGTGCCGGCGGCGGTGTACATAGGGATGGGCGATCCGACC
TACCTCGCGGTCGAACCCTTCCTCCTAAAGGGTAAGCACGTGGGCTTGCC
CGGTCGCCCGTCTTTTGGGCCGTTGTGTGATGTGTGAAAGGAGGCGTGAC
TGATTAGGGAGACTATAAAAGGAGGCGTTGTGGAACGTCTTTGCATTTTG
TGAGGATCTCTGCCGCGGCGGGAGAGAGGAGGCAAGAGGAAGTCGCGCGT
GTTTCATGGCATCAGCTCGAGCGTGTCATTTGGCAGCGGCGGTGGTGGTT
GCGTATTTTTGTCTGCAGGGAGTTCGACGGTGATTGTTGGGATACATTGC
TTGTTCCCGCCGAGAGCTGAGCGAGCAGGCCGGGACTCTAAGGCTCTGTC
CGCCCCCGTCTTAACTCGAGTGAAAAGGCGATGCGCGCGTCGATCCCCTT
TTTATGTGGCATACATAATATAATAGACTATATACTCTATTATAATATAC
TATATACTATATAATTCCTATGTAATATACTATATACTCAATTTGGTTGG
GAAATATCCACAAGCCCCCCGTGTAAAAGGCGCACCAAAATACGTGTTTC
CCGGTGAAGGATTAGCATTATCGTTGGGTAAAGTTCAAGGGAGGACTGAC
AGTAACGCGTTGCCGTAAAGGTGTTGGAAAGACACGTCGGATTCTCTGGT
TTAATTTCCCTCTACTATTGGTGGTGGCATCGGTTTTCAAGCATTGTTGG
GGTCGGAGCAGATATCAGAAGCACGCCTCGAGCCGCCCATGCCCCCCCCC
TCTCACGCTAAATGCCTATATTTACTCCTGGAAACCCGGCACTTGCCGCC
CCCAGACTGCGACACCATGCTCCTGGCGATCATGGCGACGATCCTACCCG
CGCTGGCGGGGGTTTCCACGATGTGGCAGGCCCAGGCGGGGCTCGGGGCT
ACGGGA
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Coding sequence (CDS) from alignment at H-elongata_contig89423:661..2416+

>mRNA_H-elongata_contig89423.16443.1 ID=mRNA_H-elongata_contig89423.16443.1|Name=mRNA_H-elongata_contig89423.16443.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig89423:661..2416+ (Himanthalia elongata Himel1 dioecious)
CGTACCCATTCACTCCCTCTCGTGATCATCCTCGCAAGCAGGGCAATCAG
CTCGCGCTCGTTTCCTCCACGCGACCTTCTCCTGCCCTGCGCTCTCTGTA
TCGCGGGGTTCGCGCTCGGGGTGCACTCTCAGACGCCTGAGGCATTCTGG
GACGGCACTTCGGTGGGCGTTTTGGCCAGCGTGCTGACGGCGGCGTACAC
GATGCTTTTGGCTCGTGCGGCGTACCCATTCACTCCCTCTCGTGATCATC
CTCGCAAGCAGGGCAATCAGCTCGCGCTCGTTTCCTCCACGCGACCTTCT
CCTGCCCTGCGCTCTCTGTATCGCGGGGTTCGCGCTCGGGGTGCACTCTC
AGACGCCTGAGGCATTCTGGGACGGCACTTCGGTGGGCGTTTTGGCCAGC
GTGCTGACGGCGGCGTACACGATGCTTTTGGCTCGTGCGGAGCCGCGAGA
GGCGTGGAGGGTGACGTACGTGACGAATCGAAACGCCTCCGTGCTGCTCG
TGCCGGCGGCGGTGTACATAGGGATGGGCGATCCGACCTACCTCGCGGTC
GAACCCTTCCTCCTAAAGGAGCCGCGAGAGGCGTGGAGGGTGACGTACGT
GACGAATCGAAACGCCTCCGTGCTGCTCGTGCCGGCGGCGGTGTACATAG
GGATGGGCGATCCGACCTACCTCGCGGTCGAACCCTTCCTCCTAAAGGAC
TGCGACACCATGCTCCTGGCGATCATGGCGACGATCCTACCCGCGCTGGC
GGGGGTTTCCACGATGTGGCAGGCCCAGGCGGGGCTCGGGGCTACGGGAA
CTGCGACACCATGCTCCTGGCGATCATGGCGACGATCCTACCCGCGCTGG
CGGGGGTTTCCACGATGTGGCAGGCCCAGGCGGGGCTCGGGGCTACGGGA
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