mRNA_H-elongata_contig89393.16442.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig89393.16442.1 vs. uniprot
Match: D7FVU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVU1_ECTSI) HSP 1 Score: 139 bits (351), Expect = 2.150e-39 Identity = 70/96 (72.92%), Postives = 81/96 (84.38%), Query Frame = 1
Query: 1 RDMTVSFMMPRKYTPETLPRPKNRGVKIKRVGAHRMVAIRFRGRSPDEAKVARVSRDLYRALERESLKPKGKLMVYQYHPPFMPGFLRRNEVAVQV 288
R+M VSF+MP+KYT TLP+PK+ VKIK VGAHRMVA+RFRG SPDE KVA VSR+L++ALE E L PKG L+VYQY PPFMPGFLR NEVAV+V
Sbjct: 144 RNMKVSFVMPKKYTAGTLPKPKDGRVKIKSVGAHRMVAVRFRGPSPDEKKVAEVSRELFQALEGEGLTPKGGLLVYQYQPPFMPGFLRTNEVAVRV 239
BLAST of mRNA_H-elongata_contig89393.16442.1 vs. uniprot
Match: A0A7S0RNX4_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RNX4_9CHLO) HSP 1 Score: 92.0 bits (227), Expect = 9.790e-21 Identity = 47/92 (51.09%), Postives = 61/92 (66.30%), Query Frame = 1
Query: 13 VSFMMPRKYTPETLPRPKNRGVKIKRVGAHRMVAIRFRGRSPDEAKVARVSRDLYRALERESLKPKGKLMVYQYHPPFMPGFLRRNEVAVQV 288
V+F MP KYTP TLP+PK+ V ++ V + + A+ F G P EA+VA +R L LE E LK G L V+QYHPPF PGF+R NEV ++V
Sbjct: 156 VAFTMPSKYTPATLPKPKDPDVVVREVPSRTLAALGFSGNLPSEARVADKARALRALLEAEGLKAHGPLHVWQYHPPFAPGFVRVNEVLLEV 247
BLAST of mRNA_H-elongata_contig89393.16442.1 vs. uniprot
Match: A0A7S1SXM1_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SXM1_9CHLO) HSP 1 Score: 85.9 bits (211), Expect = 4.200e-19 Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 1
Query: 13 VSFMMPRKYTPETLPRPKNRGVKIKRVGAHRMVAIRFRGRSPDEAKVARVSRDLYRALERESLKPKGKLMVYQYHPPFMPGFLRRNEVAVQV 288
VSFMMP KY +TLP+P + + IK A R+ AIR+ G SPD+ KVA +++ L L+ P G M++QYHPPF P F+R+NEV ++V
Sbjct: 58 VSFMMPSKYRMDTLPQPHDDAICIKERPACRLAAIRWTGASPDKGKVAEMAQRLRAKLQAAGEMPHGHPMLWQYHPPFAPAFMRQNEVLLRV 149
BLAST of mRNA_H-elongata_contig89393.16442.1 vs. uniprot
Match: A0A2V0P5D1_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P5D1_9CHLO) HSP 1 Score: 79.0 bits (193), Expect = 9.760e-16 Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 1
Query: 13 VSFMMPRKYTPETLPRPKNRGVKIKRVGAHRMVAIRFRGRSPDEAKVARVSRDLYRALERESLKPKGKLMVYQYHPPFMPGFLRRNEVAVQV 288
+SF+MP KYT ETLPRP + V+IK V AH + A+ FRG+ + V + + L L+ E + P+G + + QYHPPF G R NEV ++
Sbjct: 156 MSFVMPSKYTKETLPRPNDPSVEIKEVPAHTVAALTFRGQVRNRTVVEQRKQQLLEILKAEGITPEGAVQLNQYHPPFTYGIQRVNEVLFRI 247
BLAST of mRNA_H-elongata_contig89393.16442.1 vs. uniprot
Match: A0A3N5HYT6_9BACT (Heme-binding protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A3N5HYT6_9BACT) HSP 1 Score: 77.8 bits (190), Expect = 1.310e-15 Identity = 37/95 (38.95%), Postives = 61/95 (64.21%), Query Frame = 1
Query: 4 DMTVSFMMPRKYTPETLPRPKNRGVKIKRVGAHRMVAIRFRGRSPDEAKVARVSRDLYRALERESLKPKGKLMVYQYHPPFMPGFLRRNEVAVQV 288
+ T+SF+MP +YT ETLP P+++ + ++ HR I F GR DEA + +L L + ++KPK ++ QY+PP++PGF+R+NE+ V +
Sbjct: 110 EYTISFVMPAEYTLETLPIPEDKNITFNKIEPHRAAVISFSGRM-DEALANKKIAELRGWLGKNNMKPKSNFIMAQYNPPWIPGFMRKNEIMVDI 203
BLAST of mRNA_H-elongata_contig89393.16442.1 vs. uniprot
Match: A0A1V4YYL5_9EURY (SOUL heme-binding protein n=1 Tax=Methanocella sp. PtaU1.Bin125 TaxID=1811677 RepID=A0A1V4YYL5_9EURY) HSP 1 Score: 74.7 bits (182), Expect = 1.370e-14 Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 1
Query: 13 VSFMMPRKYTPETLPRPKNRGVKIKRVGAHRMVAIRFRGRSPDEAKVARVSRDLYRALERESLKPKGKLMVYQYHPPFMPGFLRRNEV 276
+SF+MP +YT +TLPRP N ++ + VG H + +RF G S E +V R L ++ L PK + +Y PP++PGF+RRNEV
Sbjct: 96 ISFVMPGRYTLDTLPRPDNENIRFREVGDHNVAVVRFSGHS-HEPRVQEKMRQLVDWMQTNGLVPKSCCRLARYDPPWIPGFMRRNEV 182
BLAST of mRNA_H-elongata_contig89393.16442.1 vs. uniprot
Match: E3FRQ9_STIAD (SOUL heme-binding family protein n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) TaxID=378806 RepID=E3FRQ9_STIAD) HSP 1 Score: 75.5 bits (184), Expect = 1.710e-14 Identity = 40/92 (43.48%), Postives = 62/92 (67.39%), Query Frame = 1
Query: 13 VSFMMPRKYTPETLPRPKNRGVKIKRVGAHRMVAIRFRGRSPDEAKVARVSRDLYRALERESLKPKGKLMVYQYHPPFMPGFLRRNEVAVQV 288
++F+MP ++T E+LP P + ++++ V A RM A+RF GR+ +EA V + +L L R+ L G+ ++ QYH PFMP FLRRNE+ V+V
Sbjct: 142 MTFVMPSEFTLESLPVPLDARIRLEAVAAKRMAALRFSGRASEEA-VKAWTAELMDRLHRQRLHAVGEPILAQYHSPFMPPFLRRNEILVEV 232
BLAST of mRNA_H-elongata_contig89393.16442.1 vs. uniprot
Match: A0A1D2W953_9EURY (SOUL heme-binding protein n=3 Tax=Methanobacteriaceae TaxID=2159 RepID=A0A1D2W953_9EURY) HSP 1 Score: 74.3 bits (181), Expect = 2.520e-14 Identity = 36/92 (39.13%), Postives = 57/92 (61.96%), Query Frame = 1
Query: 13 VSFMMPRKYTPETLPRPKNRGVKIKRVGAHRMVAIRFRGRSPDEAKVARVSRDLYRALERESLKPKGKLMVYQYHPPFMPGFLRRNEVAVQV 288
+SF MP KYT +TLP P ++ + K + ++F+GR ++ ++ +L + L + +KPK + MV QY+ P +PGFLRRNEV V+V
Sbjct: 110 ISFAMPSKYTMDTLPEPNDKRIHFKEFKNQKNAVLKFKGRVKEKLAAEKIE-ELKKWLSKNQIKPKSRFMVAQYNHPAVPGFLRRNEVIVEV 200
BLAST of mRNA_H-elongata_contig89393.16442.1 vs. uniprot
Match: D1Z2N5_METPS (Putative heme-binding protein n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) TaxID=304371 RepID=D1Z2N5_METPS) HSP 1 Score: 73.9 bits (180), Expect = 2.770e-14 Identity = 33/92 (35.87%), Postives = 58/92 (63.04%), Query Frame = 1
Query: 13 VSFMMPRKYTPETLPRPKNRGVKIKRVGAHRMVAIRFRGRSPDEAKVARVSRDLYRALERESLKPKGKLMVYQYHPPFMPGFLRRNEVAVQV 288
+SF+MP Y+ ETLP PK++ + ++V HR I+F GR +E ++ +L + L L+P ++ Q++PP++PGF+R NE+ V++
Sbjct: 97 ISFVMPSNYSMETLPEPKDKSITFRQVPPHRAAVIKFSGRMKEELAEKKIE-ELKQWLRNNHLEPMSNFIMAQFNPPWIPGFMRHNEIMVEI 187
BLAST of mRNA_H-elongata_contig89393.16442.1 vs. uniprot
Match: A0A2I0PKB2_9EURY (SOUL heme-binding protein n=1 Tax=Methanobacteriales archaeon HGW-Methanobacteriales-1 TaxID=2013815 RepID=A0A2I0PKB2_9EURY) HSP 1 Score: 72.8 bits (177), Expect = 9.990e-14 Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 1
Query: 13 VSFMMPRKYTPETLPRPKNRGVKIKRVGAHRMVAIRFRGRSPDEAKVARVSRDLYRALERESLKPKGKLMVYQYHPPFMPGFLRRNEVAVQV 288
+SF MP KYT ETLP P + +K K V +M +RF+GR + V +L LE+ ++K K ++ QY+ P +PGFLRRNEV V+V
Sbjct: 111 ISFTMPSKYTLETLPIPDDERIKFKEVKNQKMAVLRFKGRVHHKLANMEVE-ELKNWLEKNNIKAKTNFIIAQYNNPAVPGFLRRNEVMVEV 201 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89393.16442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig89393.16442.1 >prot_H-elongata_contig89393.16442.1 ID=prot_H-elongata_contig89393.16442.1|Name=mRNA_H-elongata_contig89393.16442.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp MTVSFMMPRKYTPETLPRPKNRGVKIKRVGAHRMVAIRFRGRSPDEAKVAback to top mRNA from alignment at H-elongata_contig89393:1689..2641- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig89393.16442.1 ID=mRNA_H-elongata_contig89393.16442.1|Name=mRNA_H-elongata_contig89393.16442.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=953bp|location=Sequence derived from alignment at H-elongata_contig89393:1689..2641- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig89393:1689..2641- >mRNA_H-elongata_contig89393.16442.1 ID=mRNA_H-elongata_contig89393.16442.1|Name=mRNA_H-elongata_contig89393.16442.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig89393:1689..2641- (Himanthalia elongata Himel1 dioecious)back to top |