mRNA_H-elongata_contig8938.16441.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig8938.16441.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 199 bits (505), Expect = 1.510e-56 Identity = 101/156 (64.74%), Postives = 125/156 (80.13%), Query Frame = 1
Query: 28 MVHALRSSARVPDKRECITTMHDVKKHMMSKVSELLKGEHVCITSDGWTSYGNDTYMSLTVSLITRAWELITISVNCGKSAGTTTGEALAAGITAAVVKHGIKGKVIAITTDCKPSIVKMRRILEENG-VYTHVVCFNHRFKSTTSIVFNESGVKR 492
MVHA+R SARVP+K++C+TTM VKK MM KVS L++GE VCITSDGWTS NDTYMSLT +LIT AW+L+T+SV+C KS GTTTG+ALAAGI A V KHG+ GKV A+TTDC+PS+VKM R+L + V T + C N+R +ST+SIVFN VK+
Sbjct: 1 MVHAIRPSARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKK 156
BLAST of mRNA_H-elongata_contig8938.16441.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 139 bits (349), Expect = 1.970e-35 Identity = 74/150 (49.33%), Postives = 102/150 (68.00%), Query Frame = 1
Query: 28 MVHALRSSARVPDKRECITTMHDVKKHMMSKVSELLKGEHVCITSDGWTSYGNDTYMSLTVSLITRAWELITISVNCGKSAGTTTGEALAAGITAAVVKHGIKGKVIAITTDCKPSIVKMRRILEENG-VYTHVVCFNHRFKSTTSIVFN 474
MV AL A+VP +RE ++ M VK + S+V+ +L E V IT+DGWTS N++YMSLTV+ I W+L +S++C K GTTTGE LAA + V +H + G+VIA TDC+PS++K R+LE +G +H+ C NHR +STTS VFN
Sbjct: 1 MVSALNKRAKVPSRRELLSRMRAVKTALESEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFN 150
BLAST of mRNA_H-elongata_contig8938.16441.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 136 bits (343), Expect = 1.170e-34 Identity = 72/153 (47.06%), Postives = 101/153 (66.01%), Query Frame = 1
Query: 19 FRRMVHALRSSARVPDKRECITTMHDVKKHMMSKVSELLKGEHVCITSDGWTSYGNDTYMSLTVSLITRAWELITISVNCGKSAGTTTGEALAAGITAAVVKHGIKGKVIAITTDCKPSIVKMRRILEENGV-YTHVVCFNHRFKSTTSIVFN 474
F +V L AR P +R + M ++KK++ S+V+ +L E+V IT+DGWTS N++YMSLTV+ I W+L +S+NC K G+T GE LA IT+ + +HG+ G+V A TDC+PS+VK R+LE G H+ C NHR +STTS VFN
Sbjct: 34 FHAVVSGLNKKARAPIRRALVEKMREIKKNLESEVALMLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFN 186
BLAST of mRNA_H-elongata_contig8938.16441.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 133 bits (335), Expect = 8.780e-34 Identity = 71/164 (43.29%), Postives = 99/164 (60.37%), Query Frame = 1
Query: 1 MLTDTSFRRMVHALRSSARVPDKRECITTMHDVKKHMMSKVSELLKGEHVCITSDGWTSYGNDTYMSLTVSLITRAWELITISVNCGKSAGTTTGEALAAGITAAVVKHGIKGKVIAITTDCKPSIVKMRRILEENGVYTHVVCFNHRFKSTTSIVFNESGVKR 492
M+ + F MV L+S A VP KR + + +KK + +V L GEHV +TSDGWTS NDTYM T + I+ ++L+ + V C K G TTGE L + A + ++G+ + +A TTDC+PS+VK R+LEEN TH+ CF HR +S TS F GV +
Sbjct: 1 MVENEHFIEMVRFLKSRATVPHKRLFLEKLRGMKKGLDQEVLGRLTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSK 164
BLAST of mRNA_H-elongata_contig8938.16441.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 110 bits (276), Expect = 3.790e-25 Identity = 54/120 (45.00%), Postives = 76/120 (63.33%), Query Frame = 1
Query: 133 LKGEHVCITSDGWTSYGNDTYMSLTVSLITRAWELITISVNCGKSAGTTTGEALAAGITAAVVKHGIKGKVIAITTDCKPSIVKMRRILEENGVYTHVVCFNHRFKSTTSIVFNESGVKR 492
+ GEHV +TSDGWT NDTYMS T + I+ ++L+ + + C K T GE L + A + ++G+ G+ +AITTDC+ S+VK R+LEEN TH+ CF HR +S TS F GV +
Sbjct: 1 MTGEHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSK 120
BLAST of mRNA_H-elongata_contig8938.16441.1 vs. uniprot
Match: UPI0008116268 (zinc finger BED domain-containing protein 1-like n=4 Tax=Rhagoletis TaxID=28609 RepID=UPI0008116268) HSP 1 Score: 62.4 bits (150), Expect = 2.610e-8 Identity = 48/158 (30.38%), Postives = 77/158 (48.73%), Query Frame = 1
Query: 1 MLTDTSFRRMVHALRSSARVPDKRECITTMHDVKKHMMSKVSELLKG---------EHVCITSDGWTSYGNDTYMSLTVSLITRAWEL--ITISVNCGKSAGTTTGEALAAGITAAVVKHGIKGKVIAITTDCKPSIVKMRRILEENGVYTHVVCFNH 441
++ DT FR ++H + ++P K T + DV + KV E LKG E+V IT+DGWTS N++Y+++T I ++L +S + T +A I + + G+ GKV++I TD ++ K +LE H CF H
Sbjct: 118 IVNDTGFRALMHKMDPRYKLPSK----TYLRDVS---LPKVYESLKGQLQSALECVEYVAITTDGWTSKANESYLTITCHFINTEFQLNSAVLSTSXXXXXXXHTAANIADSIRVVLTEWGLMGKVVSIVTDNDSTMKKACELLEVK----HFPCFAH 264
BLAST of mRNA_H-elongata_contig8938.16441.1 vs. uniprot
Match: UPI001787775F (zinc finger BED domain-containing protein 1-like n=2 Tax=Rhagoletis pomonella TaxID=28610 RepID=UPI001787775F) HSP 1 Score: 61.2 bits (147), Expect = 4.250e-8 Identity = 48/158 (30.38%), Postives = 79/158 (50.00%), Query Frame = 1
Query: 1 MLTDTSFRRMVHALRSSARVPDKRECITTMHDVKKHMMSKVSELLKG---------EHVCITSDGWTSYGNDTYMSLTVSLITRAWEL--ITISVNCGKSAGTTTGEALAAGITAAVVKHGIKGKVIAITTDCKPSIVKMRRILEENGVYTHVVCFNH 441
++ DT FR ++H + ++P K T + DV + KV E LKG E+V IT+DGWTS N++Y+++T I ++L +S + ++ T +A I + + G+ GKV++I TD ++ K +LE H CF H
Sbjct: 118 IVNDTGFRALMHKMDPRYKLPSK----TYLRDVS---LLKVYESLKGQLQSALECVEYVAITTDGWTSKTNESYLTITCHFINTEFQLNSAVLSTSTLLTSTNHTAANIADSIRVVLTEWGLMGKVVSIVTDNDSTMKKACELLEVK----HFPCFAH 264
BLAST of mRNA_H-elongata_contig8938.16441.1 vs. uniprot
Match: UPI000DC158A4 (zinc finger BED domain-containing protein 1-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC158A4) HSP 1 Score: 57.4 bits (137), Expect = 1.370e-6 Identity = 44/149 (29.53%), Postives = 73/149 (48.99%), Query Frame = 1
Query: 1 MLTDTSFRRMVHALRSSARVPDKRECITTMHDVKKHMM-SKVSELLKGEH-VCITSDGWTSYGNDTYMSLTVSLITRAWELITISVNCGKSAGTTTGEALAAGITAAVVKHGIKGKVIAITTDCKPSIVKMRRILEENGVYTHVVCFNH 441
++ D F+ ++ L ++P ++ +M + H KV L+ VC+T+DGWTS N+++M +T I L ++ + C K T + LA + + K I+ KV A+ +D P+IV R E N + HV CF H
Sbjct: 12 IVEDQEFQNLLKMLNGGYKLPSRKTVSNSMIPLLYHQTHEKVQALMTNCFAVCLTTDGWTSIKNESFMGVTAHFIDENVSLQSVCLGCEKFDDRHTSQNLALFLKNTIQKWSIQNKVAAVVSDNAPNIVGAIR--ECN--FRHVSCFAH 156
BLAST of mRNA_H-elongata_contig8938.16441.1 vs. uniprot
Match: UPI0018A839AD (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Lucilia sericata TaxID=13632 RepID=UPI0018A839AD) HSP 1 Score: 56.2 bits (134), Expect = 3.520e-6 Identity = 32/113 (28.32%), Postives = 60/113 (53.10%), Query Frame = 1
Query: 103 KHMMSKVSELLKGEHVCITSDGWTSYGNDTYMSLTVSLITRAWELITISVNCGKSAGTTTGEALAAGITAAVVKHGIKGKVIAITTDCKPSIVKMRRILEENGVYTHVVCFNH 441
KHM+ + +++CIT+DGWTS N++Y+S+T I+ W+ T+ ++C K+ T + L I + + G+ K+ + +D +IV + + +TH+ C H
Sbjct: 152 KHMLRDI------DNICITTDGWTSISNESYISITAHFISPDWKQKTVFISCFKTMKDHTAQNLKDEICQVLQEWGMDSKITCVLSDNAANIVAAIKKTD----WTHLSCLAH 254
BLAST of mRNA_H-elongata_contig8938.16441.1 vs. uniprot
Match: UPI00143F1A88 (zinc finger BED domain-containing protein 1-like n=3 Tax=Drosophila miranda TaxID=7229 RepID=UPI00143F1A88) HSP 1 Score: 55.8 bits (133), Expect = 4.850e-6 Identity = 33/107 (30.84%), Postives = 55/107 (51.40%), Query Frame = 1
Query: 121 VSELLKGEHVCITSDGWTSYGNDTYMSLTVSLITRAWELITISVNCGKSAGTTTGEALAAGITAAVVKHGIKGKVIAITTDCKPSIVKMRRILEENGVYTHVVCFNH 441
+ EL VC+T+DGWTS N++Y+++TV I ++T ++ C + T L + + V + +K KV AI +D +I R G ++H+ CF H
Sbjct: 149 IEELRAATAVCLTTDGWTSITNESYLAVTVHFIDEESTMLTYTIACQAFEASHTAANLCSFLEKIVTEWDLKNKVAAIASDNAHNIALAIR----TGNWSHIRCFAH 251 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8938.16441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8938.16441.1 >prot_H-elongata_contig8938.16441.1 ID=prot_H-elongata_contig8938.16441.1|Name=mRNA_H-elongata_contig8938.16441.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp MLTDTSFRRMVHALRSSARVPDKRECITTMHDVKKHMMSKVSELLKGEHVback to top mRNA from alignment at H-elongata_contig8938:7685..8182- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8938.16441.1 ID=mRNA_H-elongata_contig8938.16441.1|Name=mRNA_H-elongata_contig8938.16441.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=498bp|location=Sequence derived from alignment at H-elongata_contig8938:7685..8182- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8938:7685..8182- >mRNA_H-elongata_contig8938.16441.1 ID=mRNA_H-elongata_contig8938.16441.1|Name=mRNA_H-elongata_contig8938.16441.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig8938:7685..8182- (Himanthalia elongata Himel1 dioecious)back to top |