mRNA_H-elongata_contig89356.16437.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89356.16437.1
Unique NamemRNA_H-elongata_contig89356.16437.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig89356.16437.1 vs. uniprot
Match: D8LIB3_ECTSI (Amino_oxidase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB3_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 2.640e-25
Identity = 46/58 (79.31%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    1 QVSIKNPSNVISGFEDAVGGTFFHLNDMQDEYRGEEGSVIAADFYHASELLPLSDKEV 174
            +V++KNPSNVI+GFED+VGGTFFHLNDMQDEYR  EGSV+A+DFYHASELLPLSD+++
Sbjct:  342 KVTVKNPSNVIAGFEDSVGGTFFHLNDMQDEYRESEGSVVASDFYHASELLPLSDEQI 399
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BLAST of mRNA_H-elongata_contig89356.16437.1 vs. uniprot
Match: A0A0G4G8W3_VITBC (Amino_oxidase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G8W3_VITBC)

HSP 1 Score: 93.2 bits (230), Expect = 8.680e-21
Identity = 39/58 (67.24%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 QVSIKNPSNVISGFEDAVGGTFFHLNDMQDEYRGEEGSVIAADFYHASELLPLSDKEV 174
            ++  + PSNV SGF++ VGGTFFHLND+QDEYR  EGSV+A DFYHA+ELLPLSD+++
Sbjct:  332 KIDFEYPSNVFSGFDETVGGTFFHLNDLQDEYRDAEGSVVACDFYHAAELLPLSDEQI 389
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BLAST of mRNA_H-elongata_contig89356.16437.1 vs. uniprot
Match: A0A8J4F5Z3_9CHLO (Amino_oxidase domain-containing protein n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4F5Z3_9CHLO)

HSP 1 Score: 86.3 bits (212), Expect = 2.540e-18
Identity = 37/58 (63.79%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 QVSIKNPSNVISGFEDAVGGTFFHLNDMQDEYRGEEGSVIAADFYHASELLPLSDKEV 174
            +V+ + P+NV+SGFE   G TFF+LND+QDEYR E G+VI+ADFYHA+ LLPLSD+E+
Sbjct:  417 RVATRYPANVLSGFETTAGATFFNLNDLQDEYRNEPGTVISADFYHANSLLPLSDQEI 474
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BLAST of mRNA_H-elongata_contig89356.16437.1 vs. uniprot
Match: D8TQS8_VOLCA (Amino_oxidase domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TQS8_VOLCA)

HSP 1 Score: 85.5 bits (210), Expect = 4.760e-18
Identity = 37/58 (63.79%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 QVSIKNPSNVISGFEDAVGGTFFHLNDMQDEYRGEEGSVIAADFYHASELLPLSDKEV 174
            +V  + P+NV+SGFE   G TFF+LND+QDEYR E G+VI+ADFYHA+ LLPLSD+E+
Sbjct:  453 RVPTRYPANVLSGFESTAGATFFNLNDLQDEYRDEPGTVISADFYHANSLLPLSDQEI 510
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BLAST of mRNA_H-elongata_contig89356.16437.1 vs. uniprot
Match: A0A2J7ZY97_9CHLO (Phytoene dehydrogenase (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZY97_9CHLO)

HSP 1 Score: 82.4 bits (202), Expect = 5.260e-17
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 QVSIKNPSNVISGFEDAVGGTFFHLNDMQDEYRGEEGSVIAADFYHASELLPLSDKEV 174
            +V+ + P+NV+SGFE   G TFF+LND+QDEYR E GSVIAAD YHA+ LLPLSD+ +
Sbjct:  326 RVATRYPANVLSGFEATAGATFFNLNDLQDEYRDEPGSVIAADLYHANMLLPLSDEAI 383
[Close]
BLAST of mRNA_H-elongata_contig89356.16437.1 vs. uniprot
Match: I0Z4X3_COCSC (FAD/NAD(P)-binding domain-containing protein n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z4X3_COCSC)

HSP 1 Score: 82.4 bits (202), Expect = 5.510e-17
Identity = 33/58 (56.90%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 QVSIKNPSNVISGFEDAVGGTFFHLNDMQDEYRGEEGSVIAADFYHASELLPLSDKEV 174
            +++ + P+NV+SGFE+  GGT+F+LND+QDEY+G  G+VIAADFYH++ L+PLSD+ +
Sbjct:  319 RIATQFPANVLSGFEECTGGTWFNLNDLQDEYKGASGAVIAADFYHSNALMPLSDEAI 376
[Close]
BLAST of mRNA_H-elongata_contig89356.16437.1 vs. uniprot
Match: K9WIQ7_9CYAN (Amino_oxidase domain-containing protein n=3 Tax=Oscillatoriales TaxID=1150 RepID=K9WIQ7_9CYAN)

HSP 1 Score: 79.0 bits (193), Expect = 9.340e-16
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 QVSIKNPSNVISGFEDAVGGTFFHLNDMQDEYRGEEGSVIAADFYHASELLPLSDKEV 174
            +++I++PSN   GF+   G TFF LN +QDEYR E GSVI ADFYHA++LLPLSD+++
Sbjct:  317 KINIRHPSNACFGFDPTTGWTFFDLNALQDEYRDEPGSVIEADFYHANQLLPLSDEQI 374
[Close]
BLAST of mRNA_H-elongata_contig89356.16437.1 vs. uniprot
Match: A0A0D2MME5_9CHLO (Amino_oxidase domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MME5_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 1.450e-15
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 QVSIKNPSNVISGFEDAVGGTFFHLNDMQDEYRGEEGSVIAADFYHASELLPLSDKEV 174
            +V  K P+NV++GFE   G TFF LN +QDEYR   GSV+ ADFY ASELLPLSD ++
Sbjct:   18 KVPCKYPANVLAGFERTAGATFFDLNALQDEYRDAPGSVLTADFYGASELLPLSDDQI 75
[Close]
BLAST of mRNA_H-elongata_contig89356.16437.1 vs. uniprot
Match: A0A250WSE0_9CHLO (Amino_oxidase domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WSE0_9CHLO)

HSP 1 Score: 77.8 bits (190), Expect = 2.420e-15
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 QVSIKNPSNVISGFEDAVGG--TFFHLNDMQDEYRGEEGSVIAADFYHASELLPLSDKEV 174
            +V+ K P+NV+SGFE   G   T+FHLND+QDEYR   GSVI ADFY+A+ LLPLSD+++
Sbjct:  354 KVNTKYPANVLSGFEPVAGAGATYFHLNDLQDEYRDAPGSVITADFYNAAALLPLSDQDI 413
[Close]
BLAST of mRNA_H-elongata_contig89356.16437.1 vs. uniprot
Match: A0A6M0AB90_9CYAN (Amine oxidase (Fragment) n=1 Tax=Moorena sp. SIO4G2 TaxID=2607820 RepID=A0A6M0AB90_9CYAN)

HSP 1 Score: 76.6 bits (187), Expect = 2.960e-15
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 QVSIKNPSNVISGFEDAVGGTFFHLNDMQDEYRGEEGSVIAADFYHASELLPLSDKEV 174
            +V I++PSN   GF+   G TFF LN + DEYR E GSVI ADFYHA++LLPLSD+++
Sbjct:  116 KVEIRHPSNACFGFDATTGWTFFDLNALHDEYRDEPGSVIEADFYHANQLLPLSDQQI 173
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89356.16437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIB3_ECTSI2.640e-2579.31Amino_oxidase domain-containing protein n=1 Tax=Ec... [more]
A0A0G4G8W3_VITBC8.680e-2167.24Amino_oxidase domain-containing protein n=1 Tax=Vi... [more]
A0A8J4F5Z3_9CHLO2.540e-1863.79Amino_oxidase domain-containing protein n=3 Tax=Vo... [more]
D8TQS8_VOLCA4.760e-1863.79Amino_oxidase domain-containing protein n=1 Tax=Vo... [more]
A0A2J7ZY97_9CHLO5.260e-1763.79Phytoene dehydrogenase (Fragment) n=1 Tax=Tetrabae... [more]
I0Z4X3_COCSC5.510e-1756.90FAD/NAD(P)-binding domain-containing protein n=2 T... [more]
K9WIQ7_9CYAN9.340e-1658.62Amino_oxidase domain-containing protein n=3 Tax=Os... [more]
A0A0D2MME5_9CHLO1.450e-1560.34Amino_oxidase domain-containing protein n=1 Tax=Mo... [more]
A0A250WSE0_9CHLO2.420e-1560.00Amino_oxidase domain-containing protein n=1 Tax=Ch... [more]
A0A6M0AB90_9CYAN2.960e-1558.62Amine oxidase (Fragment) n=1 Tax=Moorena sp. SIO4G... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89356contigH-elongata_contig89356:1203..2646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue3.7e-21
Seed eggNOG ortholog2880.D8LIB3
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG1231@1,KOG0029@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size176
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931294.212315-CDS-H-elongata_contig89356:1202..12891622931294.212315-CDS-H-elongata_contig89356:1202..1289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89356 1203..1289 +
1691679777.2063117-CDS-H-elongata_contig89356:1202..12891691679777.2063117-CDS-H-elongata_contig89356:1202..1289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89356 1203..1289 +
1622931294.2298658-CDS-H-elongata_contig89356:2559..26461622931294.2298658-CDS-H-elongata_contig89356:2559..2646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89356 2560..2646 +
1691679777.220853-CDS-H-elongata_contig89356:2559..26461691679777.220853-CDS-H-elongata_contig89356:2559..2646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89356 2560..2646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89356.16437.1prot_H-elongata_contig89356.16437.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89356 1203..2646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89356.16437.1

>prot_H-elongata_contig89356.16437.1 ID=prot_H-elongata_contig89356.16437.1|Name=mRNA_H-elongata_contig89356.16437.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
QVSIKNPSNVISGFEDAVGGTFFHLNDMQDEYRGEEGSVIAADFYHASEL
LPLSDKEV
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mRNA from alignment at H-elongata_contig89356:1203..2646+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89356.16437.1 ID=mRNA_H-elongata_contig89356.16437.1|Name=mRNA_H-elongata_contig89356.16437.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1444bp|location=Sequence derived from alignment at H-elongata_contig89356:1203..2646+ (Himanthalia elongata Himel1 dioecious)
CAGGTGTCCATCAAGAATCCGTCCAACGTGATCTCCGGCTTCGAGGACGC
AGTCGGTGGCACATTCTTCCATCTCAACGATATGCAGGTGGAGCGTATAG
CGTGAATCGTGTAGCGCGAATCGTATTGCCAACCGGGAAAGCTACTCCTG
GTACTATTAATCATACTATTAGTCATACTAATGCTTGTACTAATGCTCAT
ACTATAGAATAGTCATACTAATGGTTGTACTAATGCTCATACTATAGAAT
AGTCATACTAATGGTTGAACTAATGCTCATACTATAGAATAGTCATACTA
ATGGTTGAACTAATGCTCATACTAACAGTCATGCTAATGCTTTATACTAT
TAGTCATACTAATACTAATGGTAACAATATTACTAATGCTATTGCTCATA
CTAATACTCATACTAATATTCATACTAATGCTTATACTAATGGTCATACT
AGACACGCTTCCGAGACAGATGTTGATGCCTCTTAACCTTTTTGGTCAAG
CGATATGCCGTCTAACGTATACCGTATACCGCCTCCGATACTGTCTGTGA
CTGTATTGCATATGTCCATTGTACCAATAGTGGGTGTGGGAAAAGAAAGG
CGCACAATAATTGGTCCATGGGAGTACTTGAATAGGCTGCACCGATTTTG
CAAGCTACCTTGAGGACTGCTGGCACAGTGTCGGCGGACTCTCCGTGGTA
AAAGCTATCGGTACGTAATTATGTGACCTGATGAAATCGGGATTGGCCCA
CTGACAGTTTGACGGTAAAGATGGACGTCGTCGCGGAAAACGAGAGGATC
CCGGTAGCACGCACCAGATTCAGTCTGTGTTGATAGAATGAGCAGGCTGA
CGCGGGCGAACTGCCAAACCCGTTTCGCGAGAAAAATTCTCAGGCGTGAA
CGGGAACAGGGAAATTTCGTTTTCCTTATTCAGCTGACCACAAGCAGAAG
GAAGTCATATCTGGTTGATCCTTACTATACTGCTATAATATTTTATGTGA
TAACCACACATCTACATCTCTCTCTATTTATACCTACTTTCTAGAGGACA
CCCATAGGGTTTGCACAGAGCTTATGCCAAGGGGAGCGGTTCGCGGGTCC
CGTGATCTCCGCGCATTTCTTCGATCGAACGAGGTGAACGAAGGCGAATT
GCCCCCCCCCCCCCCCTCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCACCTCGAACCCCCCCTTAGCCGCCGAG
CGCACTTCTCTCCCTCTCACTCTCCCATTACTTCTGTACCCCCCCCACTC
CATTTACTTTCCCCTCTCCCTCTCCCTCTCTATCACTGTCCACACGCTAC
CCCGCAGGATGAGTACCGTGGCGAGGAGGGCAGCGTGATCGCCGCGGACT
TTTATCACGCTTCGGAGCTGTTGCCGCTGTCGGACAAGGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig89356:1203..2646+

>mRNA_H-elongata_contig89356.16437.1 ID=mRNA_H-elongata_contig89356.16437.1|Name=mRNA_H-elongata_contig89356.16437.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig89356:1203..2646+ (Himanthalia elongata Himel1 dioecious)
CAGGTGTCCATCAAGAATCCGTCCAACGTGATCTCCGGCTTCGAGGACGC
AGTCGGTGGCACATTCTTCCATCTCAACGATATGCAGCAGGTGTCCATCA
AGAATCCGTCCAACGTGATCTCCGGCTTCGAGGACGCAGTCGGTGGCACA
TTCTTCCATCTCAACGATATGCAGGATGAGTACCGTGGCGAGGAGGGCAG
CGTGATCGCCGCGGACTTTTATCACGCTTCGGAGCTGTTGCCGCTGTCGG
ACAAGGAGGTGGATGAGTACCGTGGCGAGGAGGGCAGCGTGATCGCCGCG
GACTTTTATCACGCTTCGGAGCTGTTGCCGCTGTCGGACAAGGAGGTG
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