mRNA_H-elongata_contig89346.16435.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89346.16435.1
Unique NamemRNA_H-elongata_contig89346.16435.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig89346.16435.1 vs. uniprot
Match: D8LPM2_ECTSI (TPR repeat-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPM2_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 4.900e-18
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 DDQATRARRVYHMGNLLQKRGEVKEAAKMYRSAVKLDPSHKASHY 135
            DD +TRARRVYHMGNLLQKRGEVKEAAKMYRSAVKLDP+HKASHY
Sbjct:   36 DDPSTRARRVYHMGNLLQKRGEVKEAAKMYRSAVKLDPAHKASHY 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89346.16435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPM2_ECTSI4.900e-1893.33TPR repeat-containing protein n=2 Tax=Ectocarpus T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89346contigH-elongata_contig89346:1296..2283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue4.7e-15
Seed eggNOG ortholog2880.D8LPM2
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-06_004860.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931294.0342262-CDS-H-elongata_contig89346:1295..14371622931294.0342262-CDS-H-elongata_contig89346:1295..1437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89346 1296..1437 +
1691679777.1689758-CDS-H-elongata_contig89346:1295..14371691679777.1689758-CDS-H-elongata_contig89346:1295..1437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89346 1296..1437 +
1622931294.0549588-CDS-H-elongata_contig89346:2161..22831622931294.0549588-CDS-H-elongata_contig89346:2161..2283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89346 2162..2283 +
1691679777.1818414-CDS-H-elongata_contig89346:2161..22831691679777.1818414-CDS-H-elongata_contig89346:2161..2283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89346 2162..2283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89346.16435.1prot_H-elongata_contig89346.16435.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89346 1296..2283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89346.16435.1

>prot_H-elongata_contig89346.16435.1 ID=prot_H-elongata_contig89346.16435.1|Name=mRNA_H-elongata_contig89346.16435.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
DDQATRARRVYHMGNLLQKRGEVKEAAKMYRSAVKLDPSHKASHYNLGIA
LQELGELDEAAACYEKAITLAPDYVLAHYNLAYVRQDQ
back to top

mRNA from alignment at H-elongata_contig89346:1296..2283+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89346.16435.1 ID=mRNA_H-elongata_contig89346.16435.1|Name=mRNA_H-elongata_contig89346.16435.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=988bp|location=Sequence derived from alignment at H-elongata_contig89346:1296..2283+ (Himanthalia elongata Himel1 dioecious)
GACGACCAAGCCACTAGGGCGCGCCGAGTTTACCACATGGGCAACCTGCT
GCAGAAGAGAGGGGAGGTGAAGGAGGCGGCGAAGATGTACCGCAGCGCTG
TGAAGCTCGACCCCTCGCACAAGGCATCTCACTACAACCTCGGTACGAGA
AACGCCAAGCAACGCAATAGGACGAGTTCGTTGTTTCGCGGCTCCCTTTC
GGGAAGGAAGAACAATTATTACAGGACTGTACTGTTCTTACTAAAAAAAA
AACTTGAACTCATTATACTGTAGTCTAGTCTAGACGAAATATATCATATA
CCCTCTAGAGCTATTGATAGAACTATATTCCTTTTATCGTGTATTATATT
GAATTTAGTATGTAAAAAACCAGATCGAGTTCCATAGCAGCAATAGTTTT
TCAACAGGAGTTGAAGCACTCTCTACCTGATAGTGCCTTGTTATGCCATA
CTGTATTTTTTTCGTTTGAAGTCCCACGGCCATTGTGACAACAGCATAAC
GAATTAATGCCCTCTCGTATTAGTCGTGATTTACTAATAGTCGTAAGTCG
GTCTTTCCATCCAACAACGGGGTATCTTTTGTCACGCGGTTGCTCTCGCC
CTAGGGCCAGGTTACTATTAATACTATCGCCGCACAGGACGAGGGCCTTC
AATTAACTCGTAAGACTCGGGGCGGTACAAAGGTAGCAGCAGCAGCAGCA
GCCTCACTCAGTGGGGTTGGCTGGTTGAGACCCGGTCACGTTGTTGGTTG
TTGTTATTTTTCTGTTTCAACACAAACACTCGGTACAGTACACAACCACC
TACCGCTGCCGTACGTGGCGTATTAATAGTTTGTTGTCGTGTTACTCGGA
TTTGGGGGCGTGATAGGAATCGCTCTCCAGGAGCTGGGTGAGCTGGACGA
AGCTGCCGCCTGTTACGAGAAGGCCATCACTCTCGCACCCGACTACGTGC
TTGCGCACTACAATCTGGCCTACGTGAGGCAGGATCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig89346:1296..2283+

>mRNA_H-elongata_contig89346.16435.1 ID=mRNA_H-elongata_contig89346.16435.1|Name=mRNA_H-elongata_contig89346.16435.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig89346:1296..2283+ (Himanthalia elongata Himel1 dioecious)
GACGACCAAGCCACTAGGGCGCGCCGAGTTTACCACATGGGCAACCTGCT
GCAGAAGAGAGGGGAGGTGAAGGAGGCGGCGAAGATGTACCGCAGCGCTG
TGAAGCTCGACCCCTCGCACAAGGCATCTCACTACAACCTCGGACGACCA
AGCCACTAGGGCGCGCCGAGTTTACCACATGGGCAACCTGCTGCAGAAGA
GAGGGGAGGTGAAGGAGGCGGCGAAGATGTACCGCAGCGCTGTGAAGCTC
GACCCCTCGCACAAGGCATCTCACTACAACCTCGGAATCGCTCTCCAGGA
GCTGGGTGAGCTGGACGAAGCTGCCGCCTGTTACGAGAAGGCCATCACTC
TCGCACCCGACTACGTGCTTGCGCACTACAATCTGGCCTACGTGAGGCAG
GATCAGGAATCGCTCTCCAGGAGCTGGGTGAGCTGGACGAAGCTGCCGCC
TGTTACGAGAAGGCCATCACTCTCGCACCCGACTACGTGCTTGCGCACTA
CAATCTGGCCTACGTGAGGCAGGATCAG
back to top