mRNA_H-elongata_contig89255.16427.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89255.16427.1
Unique NamemRNA_H-elongata_contig89255.16427.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig89255.16427.1 vs. uniprot
Match: D8LTT2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT2_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 2.590e-25
Identity = 65/97 (67.01%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:    1 QTKSVLVRQLERELASTVSALGKERRRRKAETEVFKAKLEEARATTRKREEELHRREVMAKTIMNELEILQSRCDRLSASREEKVEEAEKVMGRLRE 291
            + +SVLV+QLERELASTVSAL  ERR R+ +TE  + KLEE RAT   RE EL RRE M  T+M ELE LQSRCDRL ASREE+ EEA+K M RLRE
Sbjct:  526 EEQSVLVKQLERELASTVSALKDERRERRGQTETLRRKLEETRATVGDREAELQRRERMTTTLMGELEALQSRCDRLVASREERAEEADKTMARLRE 622
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BLAST of mRNA_H-elongata_contig89255.16427.1 vs. uniprot
Match: A0A6H5KDC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC5_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.670e-24
Identity = 64/97 (65.98%), Postives = 73/97 (75.26%), Query Frame = 1 
Query:    1 QTKSVLVRQLERELASTVSALGKERRRRKAETEVFKAKLEEARATTRKREEELHRREVMAKTIMNELEILQSRCDRLSASREEKVEEAEKVMGRLRE 291
            + +SVLV+QLERELASTVSAL  ERR R+ +TE  + KLEE RA    RE EL RRE M  T+M ELE LQSRCDRL ASREE+ EEA+K M RLRE
Sbjct:  517 EEQSVLVKQLERELASTVSALKDERRERRGQTETLRRKLEETRAAVGYREAELQRRERMTTTLMGELEALQSRCDRLVASREERAEEADKTMARLRE 613
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89255.16427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTT2_ECTSI2.590e-2567.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDC5_9PHAE1.670e-2465.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89255contigH-elongata_contig89255:916..1774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_002910.1
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931293.1394322-CDS-H-elongata_contig89255:915..10421622931293.1394322-CDS-H-elongata_contig89255:915..1042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89255 916..1042 -
1691679776.8443909-CDS-H-elongata_contig89255:915..10421691679776.8443909-CDS-H-elongata_contig89255:915..1042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89255 916..1042 -
1622931293.2781014-CDS-H-elongata_contig89255:1610..17741622931293.2781014-CDS-H-elongata_contig89255:1610..1774Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89255 1611..1774 -
1691679776.8548088-CDS-H-elongata_contig89255:1610..17741691679776.8548088-CDS-H-elongata_contig89255:1610..1774Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89255 1611..1774 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89255.16427.1prot_H-elongata_contig89255.16427.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89255 916..1774 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89255.16427.1

>prot_H-elongata_contig89255.16427.1 ID=prot_H-elongata_contig89255.16427.1|Name=mRNA_H-elongata_contig89255.16427.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
QTKSVLVRQLERELASTVSALGKERRRRKAETEVFKAKLEEARATTRKRE
EELHRREVMAKTIMNELEILQSRCDRLSASREEKVEEAEKVMGRLRE
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mRNA from alignment at H-elongata_contig89255:916..1774-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89255.16427.1 ID=mRNA_H-elongata_contig89255.16427.1|Name=mRNA_H-elongata_contig89255.16427.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=859bp|location=Sequence derived from alignment at H-elongata_contig89255:916..1774- (Himanthalia elongata Himel1 dioecious)
CAAACCAAGAGCGTGTTAGTAAGGCAGCTTGAGCGCGAGCTGGCATCAAC
GGTTTCGGCACTTGGAAAAGAGAGGCGTCGAAGGAAGGCGGAGACGGAGG
TGTTTAAAGCCAAGCTCGAAGAAGCCAGAGCCACCACGAGGAAACGGGAG
GAAGAGCTCCACAGGTGTGTAGGGGGAGAAAGTGTCCACTTATTTGCTTT
TTGGTGACTCAGGGGGATAGAGGGGACACAACGCAAGAGAAGGGAAGACA
ATAGCTATGACAGCGCGTCGGTTTGGTTGAATCTCGAGCGTGGTATTCCA
GAAGATTTCGAGGCCTGCTCTGCGCGTAGGCCGATCCTTTGATAGCGTGC
GAGGGTGTGTGTGTGTAAGGGAACGATCACCCAAGGCTTTTAAACAACCC
ATCGCAACCGATCTTCTTGGCCGCTAGCCACACTTAATAGTCTAGAGGGG
GGGGTGGTAAGGAGAGGCAGCATGATGTGTCAATTCGCCCCAAGAGAAAA
AAATGTGATGCGCAATGGTGTTTCCCTTTATATGGTGGCCTGACGATGTG
CCCGTTCGCCGAAGAGAATACAGCGCGATGTGTCGAGGGGTTTTCCCAAT
GTCGATGAATGTTGGGTGAGCAACGCTGGGTGAGAGGAGCCCCCTATGCC
CATGGTGTCAATGCCTTTCCCCCGTCTCTATCTCGGTTGCCCGGTGTTCT
CATGAACGACGCGACATGAATGCGTCAAAAAGACGAGAGGTCATGGCCAA
GACGATCATGAACGAGCTCGAGATTTTGCAGTCTCGATGCGATCGACTCT
CAGCGTCGCGAGAGGAAAAAGTCGAGGAGGCGGAAAAGGTCATGGGCCGC
CTAAGGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig89255:916..1774-

>mRNA_H-elongata_contig89255.16427.1 ID=mRNA_H-elongata_contig89255.16427.1|Name=mRNA_H-elongata_contig89255.16427.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig89255:916..1774- (Himanthalia elongata Himel1 dioecious)
CAAACCAAGAGCGTGTTAGTAAGGCAGCTTGAGCGCGAGCTGGCATCAAC
GGTTTCGGCACTTGGAAAAGAGAGGCGTCGAAGGAAGGCGGAGACGGAGG
TGTTTAAAGCCAAGCTCGAAGAAGCCAGAGCCACCACGAGGAAACGGGAG
GAAGAGCTCCACAGCAAACCAAGAGCGTGTTAGTAAGGCAGCTTGAGCGC
GAGCTGGCATCAACGGTTTCGGCACTTGGAAAAGAGAGGCGTCGAAGGAA
GGCGGAGACGGAGGTGTTTAAAGCCAAGCTCGAAGAAGCCAGAGCCACCA
CGAGGAAACGGGAGGAAGAGCTCCACAGACGAGAGGTCATGGCCAAGACG
ATCATGAACGAGCTCGAGATTTTGCAGTCTCGATGCGATCGACTCTCAGC
GTCGCGAGAGGAAAAAGTCGAGGAGGCGGAAAAGGTCATGGGCCGCCTAA
GGGAGACGAGAGGTCATGGCCAAGACGATCATGAACGAGCTCGAGATTTT
GCAGTCTCGATGCGATCGACTCTCAGCGTCGCGAGAGGAAAAAGTCGAGG
AGGCGGAAAAGGTCATGGGCCGCCTAAGGGAG
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