mRNA_H-elongata_contig8922.16424.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8922.16424.1
Unique NamemRNA_H-elongata_contig8922.16424.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8922.16424.1 vs. uniprot
Match: D8LRH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH7_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.680e-10
Identity = 40/91 (43.96%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:    1 GVSMTIGSLAKASGPIAFAVIFAWSIERP--RTFPFGYQLAFYAMALFMAITVVVGWDVI--RLPETEGSSPIAEQRGLEMDDKRDYCRAD 261
            G+SMT+GSLAKA+GP  F+ IFAWSI+    R FP  Y L FY +AL M       W+VI   LP   GS   A     + D   +  R+D
Sbjct:  607 GLSMTLGSLAKAAGPAFFSAIFAWSIDDDGRRPFPLDYHLVFYLLALSMTAVCWASWNVIIDDLPPATGSKAAAAAIAADTDGGAEDDRSD 697
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BLAST of mRNA_H-elongata_contig8922.16424.1 vs. uniprot
Match: A0A6H5KX19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX19_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.930e-5
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 GVSMTIGSLAKASGPIAFAVIFAWSIERP--RTFPFGYQLAFYAMAL 135
            G+SM +GSLAKA GP  F+ IFAWSI+    R FP  Y L FY +AL
Sbjct:  649 GLSMMLGSLAKAVGPAFFSAIFAWSIDDDGRRPFPLDYHLVFYLLAL 695
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8922.16424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRH7_ECTSI2.680e-1043.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX19_9PHAE1.930e-557.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8922contigH-elongata_contig8922:3427..3775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog2880.D8LRH7
EggNOG free text desc.major facilitator superfamily
EggNOG OGsKOG2615@1,KOG2615@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size349
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8922.16424.1prot_H-elongata_contig8922.16424.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8922 3436..3720 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931292.8204167-UTR-H-elongata_contig8922:3426..34351622931292.8204167-UTR-H-elongata_contig8922:3426..3435Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8922 3427..3435 +
1691679776.7154858-UTR-H-elongata_contig8922:3426..34351691679776.7154858-UTR-H-elongata_contig8922:3426..3435Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8922 3427..3435 +
1622931292.8647113-UTR-H-elongata_contig8922:3720..37751622931292.8647113-UTR-H-elongata_contig8922:3720..3775Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8922 3721..3775 +
1691679776.737652-UTR-H-elongata_contig8922:3720..37751691679776.737652-UTR-H-elongata_contig8922:3720..3775Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8922 3721..3775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931292.8429627-CDS-H-elongata_contig8922:3435..37201622931292.8429627-CDS-H-elongata_contig8922:3435..3720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8922 3436..3720 +
1691679776.7286854-CDS-H-elongata_contig8922:3435..37201691679776.7286854-CDS-H-elongata_contig8922:3435..3720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8922 3436..3720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8922.16424.1

>prot_H-elongata_contig8922.16424.1 ID=prot_H-elongata_contig8922.16424.1|Name=mRNA_H-elongata_contig8922.16424.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MTIGSLAKASGPIAFAVIFAWSIERPRTFPFGYQLAFYAMALFMAITVVV
GWDVIRLPETEGSSPIAEQRGLEMDDKRDYCRADDVSRTPEDMP*
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mRNA from alignment at H-elongata_contig8922:3427..3775+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8922.16424.1 ID=mRNA_H-elongata_contig8922.16424.1|Name=mRNA_H-elongata_contig8922.16424.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=349bp|location=Sequence derived from alignment at H-elongata_contig8922:3427..3775+ (Himanthalia elongata Himel1 dioecious)
GGTGTCTCAATGACGATCGGCTCTCTGGCGAAGGCCTCCGGGCCCATTGC
TTTCGCTGTCATCTTTGCGTGGTCCATCGAACGACCCCGTACGTTTCCGT
TCGGCTACCAGCTAGCGTTTTACGCAATGGCCCTGTTCATGGCGATAACT
GTGGTGGTGGGTTGGGACGTCATACGTCTACCTGAAACAGAAGGCTCGTC
TCCGATAGCTGAACAAAGAGGCCTTGAGATGGATGACAAAAGAGACTACT
GTCGAGCTGACGACGTATCCCGGACGCCGGAAGATATGCCTTGATGTGTC
GACGCCGTCTTCCGCACATACAGTAATGGCTAACAGACGTCGAGTACTG
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Coding sequence (CDS) from alignment at H-elongata_contig8922:3427..3775+

>mRNA_H-elongata_contig8922.16424.1 ID=mRNA_H-elongata_contig8922.16424.1|Name=mRNA_H-elongata_contig8922.16424.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig8922:3427..3775+ (Himanthalia elongata Himel1 dioecious)
ATGACGATCGGCTCTCTGGCGAAGGCCTCCGGGCCCATTGCTTTCGCTGT
CATCTTTGCGTGGTCCATCGAACGACCCCGTACGTTTCCGTTCGGCTACC
AGCTAGCGTTTTACGCAATGGCCCTGTTCATGGCGATAACTGTGGTGGTG
GGTTGGGACGTCATACGTCTACCTGAAACAGAAGGCTCGTCTCCGATAGC
TGAACAAAGAGGCCTTGAGATGGATGACAAAAGAGACTACTGTCGAGCTG
ACGACGTATCCCGGACGCCGGAAGATATGCCTTGAATGACGATCGGCTCT
CTGGCGAAGGCCTCCGGGCCCATTGCTTTCGCTGTCATCTTTGCGTGGTC
CATCGAACGACCCCGTACGTTTCCGTTCGGCTACCAGCTAGCGTTTTACG
CAATGGCCCTGTTCATGGCGATAACTGTGGTGGTGGGTTGGGACGTCATA
CGTCTACCTGAAACAGAAGGCTCGTCTCCGATAGCTGAACAAAGAGGCCT
TGAGATGGATGACAAAAGAGACTACTGTCGAGCTGACGACGTATCCCGGA
CGCCGGAAGATATGCCTTGA
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