mRNA_H-elongata_contig89191.16422.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89191.16422.1
Unique NamemRNA_H-elongata_contig89191.16422.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig89191.16422.1 vs. uniprot
Match: D7G980_ECTSI (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G980_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 1.370e-49
Identity = 74/90 (82.22%), Postives = 79/90 (87.78%), Query Frame = 1 
Query:    1 QTSAWWFENTKHIAPNHLLGAPHPNVSAGKICTVFPVEFVMRGYLTGSTSTSIWKNYSNGCRDYCGHQLPDGMSKNERLPMGNILTPTTK 270
            QTSAWWFE T+HIAPNHLLG+PHPNV  GK C VFP+EFVMRGYLTGSTSTSIWKNY  G R YCGH LP+GMSKN+ LPMGNILTPTTK
Sbjct:  104 QTSAWWFEKTRHIAPNHLLGSPHPNVCVGKKCKVFPIEFVMRGYLTGSTSTSIWKNYEKGTRAYCGHTLPEGMSKNQALPMGNILTPTTK 193
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BLAST of mRNA_H-elongata_contig89191.16422.1 vs. uniprot
Match: A0A836C963_9STRA (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C963_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.380e-40
Identity = 66/105 (62.86%), Postives = 79/105 (75.24%), Query Frame = 1 
Query:    1 QTSAWWFENTKH--IAPNHLLGAPHPNVSAGKICTVFPVEFVMRGYLTGSTSTSIWKNYSNGCRDYCGHQLPDGMSKNERLPMGNILTPTTK-VIDSAIMHTEEV 306
            QTSAWWFE +K   +A NH+L  P PNV+ GK C VFP+EFVMRGY+TGSTSTSIWKNY  G R YCGH LP+G+ KN +LP GN+LTPTTK  +   ++  EEV
Sbjct:   87 QTSAWWFELSKKEGVADNHVLAVPDPNVTIGKKCAVFPIEFVMRGYMTGSTSTSIWKNYEKGVRQYCGHALPEGLRKNAKLPTGNLLTPTTKDAVHDELISAEEV 191
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BLAST of mRNA_H-elongata_contig89191.16422.1 vs. uniprot
Match: A0A1E7EVY2_9STRA (Phosphoribosylaminoimidazolesuccinocarboxamide synthase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVY2_9STRA)

HSP 1 Score: 141 bits (355), Expect = 3.740e-39
Identity = 59/89 (66.29%), Postives = 72/89 (80.90%), Query Frame = 1 
Query:    4 TSAWWFENTKHIAPNHLLGAPHPNVSAGKICTVFPVEFVMRGYLTGSTSTSIWKNYSNGCRDYCGHQLPDGMSKNERLPMGNILTPTTK 270
            TSA+WFE TKHI  NH++  PHP V+  + C  FP+EFV+R Y+TGST TSIWKNY+ G R+YCGH LP+GM KN++LPMGNILTPTTK
Sbjct:   54 TSAFWFEQTKHIIKNHIVAIPHPYVTIARKCEPFPIEFVVRSYMTGSTDTSIWKNYTQGVRNYCGHALPEGMVKNQKLPMGNILTPTTK 142
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BLAST of mRNA_H-elongata_contig89191.16422.1 vs. uniprot
Match: K0RX91_THAOC (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RX91_THAOC)

HSP 1 Score: 141 bits (355), Expect = 1.010e-38
Identity = 63/89 (70.79%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:    4 TSAWWFENTKHIAPNHLLGAPHPNVSAGKICTVFPVEFVMRGYLTGSTSTSIWKNYSNGCRDYCGHQLPDGMSKNERLPMGNILTPTTK 270
            TSA+WF  T+ I PNHLL  PHPNVS  K CT FP+EFV+R Y+TGSTSTSIWKNY +GCR+YCGH+LPDGM KN++L   NILTPTTK
Sbjct:   84 TSAYWFGVTQDIIPNHLLSVPHPNVSIVKKCTPFPIEFVVRSYMTGSTSTSIWKNYQDGCRNYCGHELPDGMKKNQKLEK-NILTPTTK 171
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BLAST of mRNA_H-elongata_contig89191.16422.1 vs. uniprot
Match: A0A7S2EXH0_TRICV (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXH0_TRICV)

HSP 1 Score: 140 bits (353), Expect = 1.570e-38
Identity = 60/88 (68.18%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    7 SAWWFENTKHIAPNHLLGAPHPNVSAGKICTVFPVEFVMRGYLTGSTSTSIWKNYSNGCRDYCGHQLPDGMSKNERLPMGNILTPTTK 270
            S +WF+ TKH+ PNH++  PHPNVS  K CT FP+EFV+R Y+TGSTSTSIWKNYSNG R+YCGHQLP+GM KN++LP   +LTPTTK
Sbjct:   71 SKYWFDQTKHLVPNHIIDVPHPNVSIVKKCTPFPIEFVVRAYMTGSTSTSIWKNYSNGVRNYCGHQLPEGMKKNQKLPKV-MLTPTTK 157
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BLAST of mRNA_H-elongata_contig89191.16422.1 vs. uniprot
Match: B8BXB6_THAPS (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=2 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXB6_THAPS)

HSP 1 Score: 141 bits (356), Expect = 1.780e-38
Identity = 64/89 (71.91%), Postives = 72/89 (80.90%), Query Frame = 1 
Query:    4 TSAWWFENTKHIAPNHLLGAPHPNVSAGKICTVFPVEFVMRGYLTGSTSTSIWKNYSNGCRDYCGHQLPDGMSKNERLPMGNILTPTTK 270
            TSA+WFE TK I PNHLL  PHPNVS  K CT FP+EFV+R Y+TGSTSTSIWKNY +G R+YCGH LPDGM KN++L M  ILTPTTK
Sbjct:  127 TSAYWFEVTKDIVPNHLLSVPHPNVSVVKKCTPFPIEFVVRSYMTGSTSTSIWKNYQDGVRNYCGHDLPDGMKKNQKLEM-TILTPTTK 214
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BLAST of mRNA_H-elongata_contig89191.16422.1 vs. uniprot
Match: A0A5D6Y8U3_9STRA (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8U3_9STRA)

HSP 1 Score: 139 bits (351), Expect = 5.120e-38
Identity = 64/104 (61.54%), Postives = 78/104 (75.00%), Query Frame = 1 
Query:    4 TSAWWFENTKHIAPNHLLGAPHPNVSAGKICTVFPVEFVMRGYLTGSTSTSIWKNYSNGCRDYCGHQLPDGMSKNERLPMGNILTPTTK--VIDSAIMHTEEVR 309
            TSAWWFE T+HI PNH+L APHP+    K CTVFPVEFV+RGY+TGSTSTS+W NY+ GCRD+CGH L DG  ++++LP  N++TPTTK    D  I   E VR
Sbjct:   85 TSAWWFEATRHIVPNHVLAAPHPSAMLCKKCTVFPVEFVVRGYITGSTSTSMWTNYAQGCRDFCGHALADGYVQHQKLPR-NLVTPTTKDAAHDELISGAEIVR 187
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BLAST of mRNA_H-elongata_contig89191.16422.1 vs. uniprot
Match: A0A484E6E9_BRELC (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E6E9_BRELC)

HSP 1 Score: 139 bits (349), Expect = 9.530e-38
Identity = 64/108 (59.26%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:    4 TSAWWFENTKHIAPNHLLGAPHPNVSAGKICTVFPVEFVMRGYLTGSTSTSIWKNYSNGCRDYCGHQLPDGMSKNERLPMGNILTPTTKVID-SAIMHTEEVRYTLLL 324
            TS WWF  TKHI  NHLLG PHP+V   K CTVFPVEFV+RGY+TGSTSTS+W NY NG RDYCGHQL +G  ++++LP  N++TPTTK  D   ++  +E+  T L+
Sbjct:   85 TSVWWFNQTKHIVANHLLGMPHPSVMLCKKCTVFPVEFVVRGYITGSTSTSMWANYRNGVRDYCGHQLEEGYKQHQKLPR-NLVTPTTKDKDHDELISGQEIVRTCLM 191
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BLAST of mRNA_H-elongata_contig89191.16422.1 vs. uniprot
Match: A0A3D2JLN9_9CHLR (Phosphoribosylaminoimidazolesuccinocarboxamide synthase (Fragment) n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A3D2JLN9_9CHLR)

HSP 1 Score: 135 bits (340), Expect = 1.150e-37
Identity = 56/89 (62.92%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:    4 TSAWWFENTKHIAPNHLLGAPHPNVSAGKICTVFPVEFVMRGYLTGSTSTSIWKNYSNGCRDYCGHQLPDGMSKNERLPMGNILTPTTK 270
            TSAWWFE T+HI PNH++  P PNV+  K C VFP+EFVMRGY+TG+TSTS+W  Y +G R+YCG++LP+G+ KN++LP  NI+TPTTK
Sbjct:   62 TSAWWFEQTRHIVPNHIVSIPDPNVTVAKKCEVFPIEFVMRGYITGTTSTSLWTVYQSGSRNYCGNELPEGLVKNQKLPE-NIITPTTK 149
[Close]
BLAST of mRNA_H-elongata_contig89191.16422.1 vs. uniprot
Match: A0A4D9CWR3_9STRA (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWR3_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.280e-37
Identity = 58/89 (65.17%), Postives = 68/89 (76.40%), Query Frame = 1 
Query:    4 TSAWWFENTKHIAPNHLLGAPHPNVSAGKICTVFPVEFVMRGYLTGSTSTSIWKNYSNGCRDYCGHQLPDGMSKNERLPMGNILTPTTK 270
            TS WWFE +K + PNH+L  PHPN   GK CTVFPVEFVMRGY+TGST TS+W NY  G R YCGH LP+G+ KN++L   N+LTPTTK
Sbjct:   94 TSQWWFEKSKDLVPNHILAVPHPNACIGKKCTVFPVEFVMRGYITGSTDTSLWTNYKKGVRQYCGHALPEGLKKNQQLA-NNLLTPTTK 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89191.16422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G980_ECTSI1.370e-4982.22Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
A0A836C963_9STRA2.380e-4062.86Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
A0A1E7EVY2_9STRA3.740e-3966.29Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
K0RX91_THAOC1.010e-3870.79Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
A0A7S2EXH0_TRICV1.570e-3868.18Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
B8BXB6_THAPS1.780e-3871.91Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
A0A5D6Y8U3_9STRA5.120e-3861.54Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
A0A484E6E9_BRELC9.530e-3859.26Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
A0A3D2JLN9_9CHLR1.150e-3762.92Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
A0A4D9CWR3_9STRA2.280e-3765.17Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89191contigH-elongata_contig89191:227..1505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.5
Seed ortholog evalue9.1e-40
Seed eggNOG ortholog2880.D7G980
KEGG rclassRC00064,RC00162
KEGG koko:K01923
KEGG ReactionR04591
KEGG Pathwayko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130
KEGG ModuleM00048
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009719,GO:0009725,GO:0009733,GO:0009987,GO:0010033,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0050896,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.phosphoribosylaminoimidazole carboxylase activity
EggNOG OGsCOG0152@1,KOG2835@2759
EC6.3.2.6
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931292.5496063-CDS-H-elongata_contig89191:226..4661622931292.5496063-CDS-H-elongata_contig89191:226..466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89191 227..466 -
1691679776.588977-CDS-H-elongata_contig89191:226..4661691679776.588977-CDS-H-elongata_contig89191:226..466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89191 227..466 -
1622931292.567883-CDS-H-elongata_contig89191:1406..15051622931292.567883-CDS-H-elongata_contig89191:1406..1505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89191 1407..1505 -
1691679776.6135898-CDS-H-elongata_contig89191:1406..15051691679776.6135898-CDS-H-elongata_contig89191:1406..1505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89191 1407..1505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89191.16422.1prot_H-elongata_contig89191.16422.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89191 227..1505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89191.16422.1

>prot_H-elongata_contig89191.16422.1 ID=prot_H-elongata_contig89191.16422.1|Name=mRNA_H-elongata_contig89191.16422.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
QTSAWWFENTKHIAPNHLLGAPHPNVSAGKICTVFPVEFVMRGYLTGSTS
TSIWKNYSNGCRDYCGHQLPDGMSKNERLPMGNILTPTTKVIDSAIMHTE
EVRYTLLLERNAL
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mRNA from alignment at H-elongata_contig89191:227..1505-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89191.16422.1 ID=mRNA_H-elongata_contig89191.16422.1|Name=mRNA_H-elongata_contig89191.16422.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1279bp|location=Sequence derived from alignment at H-elongata_contig89191:227..1505- (Himanthalia elongata Himel1 dioecious)
CAGACCAGCGCCTGGTGGTTCGAGAACACAAAACACATTGCACCCAACCA
TCTGCTGGGAGCGCCTCACCCTAACGTCTCCGCCGGCAAGATATGTACGG
TGAGCGAGCGAGAGAGGAACAAAGCAAGGCCAAACACCACATCAGACCAG
TCCAGCCCTAGAGCTGAAATCATATCTTATTAGTGCGACGGGTGATTTTT
CCGTGTGCATGTAACAACATAGCCTTTCCTATCCATCTCGCCCCTCTGGG
CTGGCTTTACTTGATTTTGATTGAAATCTCACATCAGCTGATGATGTCAA
AATCCACCCTGTGGTCACATATAGGCGGGGCCGGCGCCTAACGCATCTAC
AATCATCATTATCCCGTGGGTTATTCCTTCTTTTCCTGGCCGCGAACGAG
ATGTCTGCTGCTATACCCGACAGTGGTGGTTGAATCCTTCGCGAGACATA
AGAGTTTGCTAGGCTTGGCAAGTTATTTCCGTAAGCTTGTGCCATAAATA
TTCCGAGAGAAGGAACGTTCCTCGGGGACGCTATAGCGTTCCCAGTAGTA
GCAGAAAATGTACCCAGAGTTATTTTCTTCCCGATTTTATTATACCCCGT
GTATGTACCGATACAAGCCTGTAAATAATGTAGAAACTGAAAAAAAAAAT
GCCGAGGAAAATAGAAAAACAGAAAAAACCCCTACAATCTCCGAATCTGT
TCTCCAAAAATACAGTCAAACAAAAAAGTTGCGTGCATCTCTCACTATTT
TTGCCATAAATCCAATCATATCCAACCCACAACCCCCCAGTATTCTTAGC
CCTTTTGGAACTGAATTTCAAGTTTTATATTAAGTTTAGACCAGAAAAAA
ACAGATCGAGTTCCACAGGGGTTAAGCGACAATCTTAATGTAAGAGCGTT
ATATCCAAACATGTAAAAGTCGAGGGATGTTTTCATCTAGACGTAGCAGG
CTTTTCTCGACAAAATCATCGACGGTAATCGTCTCGATCATAGTCCCTTC
GTATCCTCAGAGGATCAAACGCCTTACATTTCTTTTCAGGTGTTCCCCGT
GGAGTTCGTGATGCGTGGTTACCTAACAGGTTCGACCTCTACTTCGATCT
GGAAGAATTATTCGAACGGGTGCAGGGATTACTGTGGCCATCAGTTACCC
GACGGCATGTCGAAGAACGAGAGGCTACCGATGGGGAACATACTCACGCC
GACCACAAAGGTGATTGATTCGGCGATCATGCATACGGAAGAAGTTAGAT
ATACGCTGCTTCTAGAAAGGAATGCTCTA
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Coding sequence (CDS) from alignment at H-elongata_contig89191:227..1505-

>mRNA_H-elongata_contig89191.16422.1 ID=mRNA_H-elongata_contig89191.16422.1|Name=mRNA_H-elongata_contig89191.16422.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig89191:227..1505- (Himanthalia elongata Himel1 dioecious)
CAGACCAGCGCCTGGTGGTTCGAGAACACAAAACACATTGCACCCAACCA
TCTGCTGGGAGCGCCTCACCCTAACGTCTCCGCCGGCAAGATATGTACGC
AGACCAGCGCCTGGTGGTTCGAGAACACAAAACACATTGCACCCAACCAT
CTGCTGGGAGCGCCTCACCCTAACGTCTCCGCCGGCAAGATATGTACGGT
GTTCCCCGTGGAGTTCGTGATGCGTGGTTACCTAACAGGTTCGACCTCTA
CTTCGATCTGGAAGAATTATTCGAACGGGTGCAGGGATTACTGTGGCCAT
CAGTTACCCGACGGCATGTCGAAGAACGAGAGGCTACCGATGGGGAACAT
ACTCACGCCGACCACAAAGGTGATTGATTCGGCGATCATGCATACGGAAG
AAGTTAGATATACGCTGCTTCTAGAAAGGAATGCTCTAGTGTTCCCCGTG
GAGTTCGTGATGCGTGGTTACCTAACAGGTTCGACCTCTACTTCGATCTG
GAAGAATTATTCGAACGGGTGCAGGGATTACTGTGGCCATCAGTTACCCG
ACGGCATGTCGAAGAACGAGAGGCTACCGATGGGGAACATACTCACGCCG
ACCACAAAGGTGATTGATTCGGCGATCATGCATACGGAAGAAGTTAGATA
TACGCTGCTTCTAGAAAGGAATGCTCTA
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