mRNA_H-elongata_contig89159.16419.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89159.16419.1
Unique NamemRNA_H-elongata_contig89159.16419.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig89159.16419.1 vs. uniprot
Match: A0A835ZCY6_9STRA (Glycerol-3-phosphate dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCY6_9STRA)

HSP 1 Score: 163 bits (413), Expect = 2.200e-45
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:    1 GGIRYLETAFKKLDLDSYRLVEEALEERAYMLQAAPYMNHPLPIMIPVYTWWELPYMWIGAKVYDWLAGSKLVVPPSHYMSREEAIYNFPKLK 279
            GGIRYLETAFKKLDL+S  LV EALEERAYML+AAPYMN PLPIMIP+YTWWELPYMW GAKVYD +AGS+  VPPSHYMS EEA++NFP L+
Sbjct:  123 GGIRYLETAFKKLDLESLHLVREALEERAYMLRAAPYMNKPLPIMIPIYTWWELPYMWAGAKVYDLVAGSRRAVPPSHYMSAEEALFNFPMLR 215
[Close]
BLAST of mRNA_H-elongata_contig89159.16419.1 vs. uniprot
Match: A0A7S3XZ35_HETAK (Glycerol-3-phosphate dehydrogenase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ35_HETAK)

HSP 1 Score: 146 bits (369), Expect = 4.550e-42
Identity = 65/95 (68.42%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:    1 GGIRYLETAFKKLDLDSYRLVEEALEERAYMLQAAPYMNHPLPIMIPVYTWWELPYMWIGAKVYDWLAGSKLVVPPSHYMSREEAIYNFPKLKEE 285
            GG+RYLE AFKKLD  S+ LV+EALEER +ML+AAPYMNHPLPIMIP+Y WW++PYM +G KVYDWLAG+  VVPPSHY+  + A++ FP LK E
Sbjct:   86 GGVRYLEAAFKKLDWGSWELVKEALEERGFMLRAAPYMNHPLPIMIPLYQWWQVPYMLLGVKVYDWLAGAARVVPPSHYLHPDGALFQFPMLKAE 180
[Close]
BLAST of mRNA_H-elongata_contig89159.16419.1 vs. uniprot
Match: A0A2P4XJ11_9STRA (Glycerol-3-phosphate dehydrogenase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XJ11_9STRA)

HSP 1 Score: 140 bits (354), Expect = 6.030e-39
Identity = 62/95 (65.26%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:    1 GGIRYLETAFKKLDLDSYRLVEEALEERAYMLQAAPYMNHPLPIMIPVYTWWELPYMWIGAKVYDWLAGSKLVVPPSHYMSREEAIYNFPKLKEE 285
            GGIRYLETAF KLD  +++LV EALEER++ L AAPYMN PLPIMIP+Y WWE+PYMW+GAK YD +AGSK  VP S+Y++ +EA++ FP L++E
Sbjct:  119 GGIRYLETAFMKLDYAAFKLVNEALEERSFFLSAAPYMNRPLPIMIPIYNWWEVPYMWVGAKAYDVVAGSKRFVPGSYYINADEAMFQFPMLRKE 213
[Close]
BLAST of mRNA_H-elongata_contig89159.16419.1 vs. uniprot
Match: A0A6G0X560_9STRA (Glycerol-3-phosphate dehydrogenase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X560_9STRA)

HSP 1 Score: 145 bits (367), Expect = 6.170e-39
Identity = 66/93 (70.97%), Postives = 77/93 (82.80%), Query Frame = 1 
Query:    1 GGIRYLETAFKKLDLDSYRLVEEALEERAYMLQAAPYMNHPLPIMIPVYTWWELPYMWIGAKVYDWLAGSKLVVPPSHYMSREEAIYNFPKLK 279
            GGIRYLETAF KLD  +Y+LV EALEER +ML AAPYMN PLPIMIP+YTWWE+PYMW+GAKVYD +AGS   VP S+Y+  EEA+Y +P LK
Sbjct:  132 GGIRYLETAFMKLDYSAYKLVMEALEERKHMLTAAPYMNRPLPIMIPIYTWWEIPYMWVGAKVYDLVAGSDRSVPSSYYIDAEEAMYQYPNLK 224
[Close]
BLAST of mRNA_H-elongata_contig89159.16419.1 vs. uniprot
Match: A0A1W0A6Y2_9STRA (Glycerol-3-phosphate dehydrogenase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6Y2_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.150e-38
Identity = 65/95 (68.42%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:    1 GGIRYLETAFKKLDLDSYRLVEEALEERAYMLQAAPYMNHPLPIMIPVYTWWELPYMWIGAKVYDWLAGSKLVVPPSHYMSREEAIYNFPKLKEE 285
            GGIRYLETAF KLD  +Y LV EALEER +ML AAPYMNHPLPIMIP+YTWWE+PYMW+GAK YD +AG++  VP S+Y+  EEA++ +P LK+E
Sbjct:  128 GGIRYLETAFMKLDKAAYDLVTEALEERKHMLSAAPYMNHPLPIMIPIYTWWEIPYMWVGAKAYDLVAGTQRYVPGSYYIDPEEALFQYPNLKKE 222
[Close]
BLAST of mRNA_H-elongata_contig89159.16419.1 vs. uniprot
Match: A0A485LBW4_9STRA (Glycerol-3-phosphate dehydrogenase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBW4_9STRA)

HSP 1 Score: 144 bits (362), Expect = 3.160e-38
Identity = 65/95 (68.42%), Postives = 78/95 (82.11%), Query Frame = 1 
Query:    1 GGIRYLETAFKKLDLDSYRLVEEALEERAYMLQAAPYMNHPLPIMIPVYTWWELPYMWIGAKVYDWLAGSKLVVPPSHYMSREEAIYNFPKLKEE 285
            GGIRYLETAF KLD  +Y LV EALEER +ML AAPYMN PLPIMIP+YTWWE+PYMW+GAK YD +AGS+  VP S+Y+  +EAIY +P LK++
Sbjct:  133 GGIRYLETAFMKLDYAAYALVTEALEERKHMLTAAPYMNRPLPIMIPIYTWWEIPYMWVGAKAYDLVAGSQRSVPSSYYIDADEAIYQYPNLKKD 227
[Close]
BLAST of mRNA_H-elongata_contig89159.16419.1 vs. uniprot
Match: A0A0P1AVA1_PLAHL (Glycerol-3-phosphate dehydrogenase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AVA1_PLAHL)

HSP 1 Score: 143 bits (361), Expect = 4.010e-38
Identity = 64/95 (67.37%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:    1 GGIRYLETAFKKLDLDSYRLVEEALEERAYMLQAAPYMNHPLPIMIPVYTWWELPYMWIGAKVYDWLAGSKLVVPPSHYMSREEAIYNFPKLKEE 285
            GGIRYLETAF KLD  +Y+LV EALEER++ L AAPYMN PLPIMIP+Y WWE+PYMW+GAK YD +AGSK  VP S+Y++ EEA++ FP L++E
Sbjct:  119 GGIRYLETAFMKLDYAAYKLVNEALEERSFFLSAAPYMNRPLPIMIPIYKWWEVPYMWVGAKAYDIVAGSKRFVPSSYYINAEEAMFQFPMLRKE 213
[Close]
BLAST of mRNA_H-elongata_contig89159.16419.1 vs. uniprot
Match: A0A024FSS3_9STRA (Glycerol-3-phosphate dehydrogenase n=2 Tax=Albugo TaxID=65356 RepID=A0A024FSS3_9STRA)

HSP 1 Score: 142 bits (359), Expect = 7.610e-38
Identity = 64/93 (68.82%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:    1 GGIRYLETAFKKLDLDSYRLVEEALEERAYMLQAAPYMNHPLPIMIPVYTWWELPYMWIGAKVYDWLAGSKLVVPPSHYMSREEAIYNFPKLK 279
            GGIRYLETAFKKLD  S +LV EALEERA+ L +APYMN PLPIMIP+Y WWE+PYMW+GAKVYD +AGSK  VP SH+++ +EA++ FP L+
Sbjct:  118 GGIRYLETAFKKLDYPSLKLVYEALEERAFFLGSAPYMNRPLPIMIPIYKWWEVPYMWVGAKVYDLVAGSKRYVPSSHFINADEALFQFPMLQ 210
[Close]
BLAST of mRNA_H-elongata_contig89159.16419.1 vs. uniprot
Match: K3WZS9_GLOUD (Glycerol-3-phosphate dehydrogenase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZS9_GLOUD)

HSP 1 Score: 141 bits (356), Expect = 2.060e-37
Identity = 64/95 (67.37%), Postives = 80/95 (84.21%), Query Frame = 1 
Query:    1 GGIRYLETAFKKLDLDSYRLVEEALEERAYMLQAAPYMNHPLPIMIPVYTWWELPYMWIGAKVYDWLAGSKLVVPPSHYMSREEAIYNFPKLKEE 285
            GGIRYLETAF KLD  +++LV EALEER++ L AAPYMN PLPIMIPVY WWE+PYMW+GAK+YD +AGSK  VP S+Y++ EEA++ FP L++E
Sbjct:  120 GGIRYLETAFMKLDYAAFKLVFEALEERSFFLSAAPYMNRPLPIMIPVYNWWEVPYMWVGAKMYDVVAGSKRFVPGSYYINAEEAMFQFPMLRKE 214
[Close]
BLAST of mRNA_H-elongata_contig89159.16419.1 vs. uniprot
Match: A0A5D6Y8X0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8X0_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.060e-37
Identity = 64/95 (67.37%), Postives = 80/95 (84.21%), Query Frame = 1 
Query:    1 GGIRYLETAFKKLDLDSYRLVEEALEERAYMLQAAPYMNHPLPIMIPVYTWWELPYMWIGAKVYDWLAGSKLVVPPSHYMSREEAIYNFPKLKEE 285
            GGIRYLETAF KLD  +++LV EALEERA+ L AAPYMN PLPIMIPVY WWE+PYMW+GAK+YD +AGSK  VP S+Y++ +EA++ FP L++E
Sbjct:  121 GGIRYLETAFMKLDYAAFKLVFEALEERAFFLSAAPYMNRPLPIMIPVYNWWEVPYMWVGAKMYDVVAGSKRFVPGSYYINADEAMFQFPMLRKE 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89159.16419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZCY6_9STRA2.200e-4580.65Glycerol-3-phosphate dehydrogenase n=1 Tax=Tribone... [more]
A0A7S3XZ35_HETAK4.550e-4268.42Glycerol-3-phosphate dehydrogenase (Fragment) n=1 ... [more]
A0A2P4XJ11_9STRA6.030e-3965.26Glycerol-3-phosphate dehydrogenase (Fragment) n=1 ... [more]
A0A6G0X560_9STRA6.170e-3970.97Glycerol-3-phosphate dehydrogenase n=1 Tax=Aphanom... [more]
A0A1W0A6Y2_9STRA1.150e-3868.42Glycerol-3-phosphate dehydrogenase n=1 Tax=Thraust... [more]
A0A485LBW4_9STRA3.160e-3868.42Glycerol-3-phosphate dehydrogenase n=1 Tax=Aphanom... [more]
A0A0P1AVA1_PLAHL4.010e-3867.37Glycerol-3-phosphate dehydrogenase n=1 Tax=Plasmop... [more]
A0A024FSS3_9STRA7.610e-3868.82Glycerol-3-phosphate dehydrogenase n=2 Tax=Albugo ... [more]
K3WZS9_GLOUD2.060e-3767.37Glycerol-3-phosphate dehydrogenase n=1 Tax=Globisp... [more]
A0A5D6Y8X0_9STRA2.060e-3767.37Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89159contigH-elongata_contig89159:937..1922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.2
Seed ortholog evalue1.6e-32
Seed eggNOG ortholog653948.CCA22752
KEGG rclassRC00029
KEGG koko:K00111
KEGG ReactionR00848
KEGG Pathwayko00564,ko01110,map00564,map01110
EggNOG free text desc.sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity
EggNOG OGsCOG0578@1,KOG0042@2759
EC1.1.5.3
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size289
Cds size288
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89159.16419.1prot_H-elongata_contig89159.16419.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89159 938..1922 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931292.2990303-CDS-H-elongata_contig89159:937..10391622931292.2990303-CDS-H-elongata_contig89159:937..1039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89159 938..1039 -
1691679776.4747279-CDS-H-elongata_contig89159:937..10391691679776.4747279-CDS-H-elongata_contig89159:937..1039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89159 938..1039 -
1622931292.3160195-CDS-H-elongata_contig89159:1550..16371622931292.3160195-CDS-H-elongata_contig89159:1550..1637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89159 1551..1637 -
1691679776.4878654-CDS-H-elongata_contig89159:1550..16371691679776.4878654-CDS-H-elongata_contig89159:1550..1637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89159 1551..1637 -
1622931292.3334417-CDS-H-elongata_contig89159:1823..19221622931292.3334417-CDS-H-elongata_contig89159:1823..1922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89159 1824..1922 -
1691679776.5046442-CDS-H-elongata_contig89159:1823..19221691679776.5046442-CDS-H-elongata_contig89159:1823..1922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89159 1824..1922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89159.16419.1

>prot_H-elongata_contig89159.16419.1 ID=prot_H-elongata_contig89159.16419.1|Name=mRNA_H-elongata_contig89159.16419.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
GGIRYLETAFKKLDLDSYRLVEEALEERAYMLQAAPYMNHPLPIMIPVYT
WWELPYMWIGAKVYDWLAGSKLVVPPSHYMSREEAIYNFPKLKEEA
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mRNA from alignment at H-elongata_contig89159:937..1922-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89159.16419.1 ID=mRNA_H-elongata_contig89159.16419.1|Name=mRNA_H-elongata_contig89159.16419.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=986bp|location=Sequence derived from alignment at H-elongata_contig89159:937..1922- (Himanthalia elongata Himel1 dioecious)
GGAGGCATCCGCTACCTCGAGACGGCGTTCAAGAAGCTCGACCTCGATAG
CTACAGGCTGGTGGAGGAGGCGCTAGAGGAAAGAGCGTACATGCTTCAGG
TACGGGGATTCTCGTGATCTACGGCGCGCAAACATGACTGCTAGTGCTGT
TTCAGTACGGTAGTTTAACATCACGCCGTGAGTTATGGGTGGATGGGTGT
CTACACCGGCAGTGGCGTCTTATGATCTCGGTTCGTACTCCCGCCTCTGT
GATTACCGACGGTGTTTACCGGCGACTACCCTAAGGCGGCCCCGTACATG
AACCACCCCCTGCCGATCATGATCCCCGTCTATACTTGGTGGGAGCTGCC
GTACATGTGGATCGGCGCCAAGGTACGATGCTGCTAGCAAAACAAGTCGT
ACGTGAGGCGCAAGAGAGGAATCGAGGACGGCTCTGAGATATTAGCGGTG
TTATTGCATGCCTGGAAAAGGCGACGACACGAGAGAAAAATCAAGTAGGC
ACCATTTTGTTTTTTTAAGTGGGGGAGGGGGCGGGATCGTCGCGAGCTTC
CTTGCGCCGATGTGTGGCGCCGCACGCAGCCGACTTGAGTGCTGGACACA
GCGACGCCGATGTTTACCTCCACGATGCGCGGGATCGTGTCTGTACAATC
GATTATCACAAGAAGCAATCACCATATATTCATAGTAACACTACGACTAG
CCGAGGAACATTGCAATAATTGTCCTCGCCGTCTTGATTCCCCCGCCTCT
TTCCAATGCCGTGGTGATACTCACACGATTTGGTGATGACTATATTCTCG
TGATTGTGGAACGCTTTCGTCACGATCATGAAAAGACTCACCGTCACGAT
AGCTACTGGTATATTCTATCGTGATACAAATAGGTGTACGATTGGCTGGC
GGGCTCGAAGCTAGTGGTCCCACCGTCGCACTATATGAGCCGGGAGGAGG
CCATCTACAACTTCCCCAAGCTCAAAGAAGAGGCGA
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Coding sequence (CDS) from alignment at H-elongata_contig89159:937..1922-

>mRNA_H-elongata_contig89159.16419.1 ID=mRNA_H-elongata_contig89159.16419.1|Name=mRNA_H-elongata_contig89159.16419.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig89159:937..1922- (Himanthalia elongata Himel1 dioecious)
GGAGGCATCCGCTACCTCGAGACGGCGTTCAAGAAGCTCGACCTCGATAG
CTACAGGCTGGTGGAGGAGGCGCTAGAGGAAAGAGCGTACATGCTTCAGG
GAGGCATCCGCTACCTCGAGACGGCGTTCAAGAAGCTCGACCTCGATAGC
TACAGGCTGGTGGAGGAGGCGCTAGAGGAAAGAGCGTACATGCTTCAGGC
GGCCCCGTACATGAACCACCCCCTGCCGATCATGATCCCCGTCTATACTT
GGTGGGAGCTGCCGTACATGTGGATCGGCGCCAAGGCGGCCCCGTACATG
AACCACCCCCTGCCGATCATGATCCCCGTCTATACTTGGTGGGAGCTGCC
GTACATGTGGATCGGCGCCAAGGTGTACGATTGGCTGGCGGGCTCGAAGC
TAGTGGTCCCACCGTCGCACTATATGAGCCGGGAGGAGGCCATCTACAAC
TTCCCCAAGCTCAAAGAAGAGGCGGTGTACGATTGGCTGGCGGGCTCGAA
GCTAGTGGTCCCACCGTCGCACTATATGAGCCGGGAGGAGGCCATCTACA
ACTTCCCCAAGCTCAAAGAAGAGGCG
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