mRNA_H-elongata_contig89145.16417.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig89145.16417.1 vs. uniprot
Match: UPI001F09FFB2 (ankyrin repeat domain-containing protein n=3 Tax=Ralstonia solanacearum TaxID=305 RepID=UPI001F09FFB2) HSP 1 Score: 58.5 bits (140), Expect = 1.020e-7 Identity = 43/136 (31.62%), Postives = 66/136 (48.53%), Query Frame = 1
Query: 1 AAHRGMVNICEMLLEKGVDVEAMSEDGFNALIAGASEGHATVVELLLEKGKANPNAKDKLPFAVDVSLICLSSAGCLFLLYTLKD----------GTTALMGASVRGHKEVVDVLLAHRANVDQQNGGGHTALMFA 378
AA G +N +LL+KG + + G L A G A+ +LL++G P K P+ + + + A + L+ L+D G TAL A+ G+ E+V +LLA A++DQ+N G TAL A
Sbjct: 91 AASSGNLNAMRVLLDKGAQRDKPTGSGETPLEAAVLNGQASAACMLLQRGARLPPPAQK-PYLLPAAALTEDFASAVTLVAILRDHDFDPNARMNGDTALHIATELGNVELVRLLLARGASIDQKNSRGETALSIA 225
BLAST of mRNA_H-elongata_contig89145.16417.1 vs. uniprot
Match: K0RBF4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RBF4_THAOC) HSP 1 Score: 57.4 bits (137), Expect = 4.830e-7 Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1
Query: 1 AAHRGMVNICEMLLEKGVD---------VEAMSEDGFNALIAGASEGHATVVELLLEKGKANPNAKDK 177
AAHRGM+N+ E LLEK V+ S++G L+A ASEGH +++ LL+ GKA+ NA DK
Sbjct: 708 AAHRGMLNVTEALLEKHASSPKAGEEGWVDNASDEGVTPLLASASEGHLAILQKLLDTGKADVNAIDK 775
BLAST of mRNA_H-elongata_contig89145.16417.1 vs. uniprot
Match: A0A2G5DP32_AQUCA (Uncharacterized protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5DP32_AQUCA) HSP 1 Score: 55.8 bits (133), Expect = 1.500e-6 Identity = 41/135 (30.37%), Postives = 65/135 (48.15%), Query Frame = 1
Query: 1 AAHRGMVNICEMLLEK-GVDVEAMSEDGFNALIAGASEGHATVVELLLEKGKANPNAKDK---------------LPFAVDVSLICLSSA------GCLFLLYTLKDGTTALMGASVRGHKEVVDVLLAHRANVD 339
AAH+G NIC+ +E +V+ +G L +SEGH + L+EKG A+P A D+ L F+ S+ C S + L L+ + G T L +++RGH E+V +LL+ +V+
Sbjct: 54 AAHKGWTNICKYFIEDLNFNVDEKDTEGKTPLFGASSEGHLRTILYLIEKG-ADPAALDQYKTNALHCAASKGLYLSFSYKNSMFCGSDSFFYLYLQILHFLFVIYFGQTKLRLSNIRGHTEIVSLLLSKGIDVN 187
BLAST of mRNA_H-elongata_contig89145.16417.1 vs. uniprot
Match: W7T8V6_9STRA (Ankyrin repeat protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T8V6_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 3.040e-6 Identity = 43/125 (34.40%), Postives = 58/125 (46.40%), Query Frame = 1
Query: 1 AAHRGMVNICEMLLEKGVDVEAMSEDGFNALIAGASE--GHATVVELLLEKGKANPNAKDKLPFAVDVSLICLSSAGCLFLLYTLKDGTTALMGASVRGHKEVVDVLLAHRANVDQQNGGGHTAL 369
AA RG ++ LL++G DV DG AL A+ G+A VV+LLLEKG A+P A K + L G + L T + G G K R ++D+Q+G G TAL
Sbjct: 55 AASRGHSSVVGCLLDRGADVHLRDLDGMTALTHAAAGRLGNAKVVQLLLEKGGADPGAACKWGSTPLMEAAALGFEGRMQALLTRRRGANQGRGGKSETKKTWSG---GSRVSIDRQDGKGATAL 176
BLAST of mRNA_H-elongata_contig89145.16417.1 vs. uniprot
Match: A0A399VUN4_RALSL (Ankyrin repeat domain-containing protein n=6 Tax=Ralstonia solanacearum TaxID=305 RepID=A0A399VUN4_RALSL) HSP 1 Score: 53.5 bits (127), Expect = 4.470e-6 Identity = 41/136 (30.15%), Postives = 64/136 (47.06%), Query Frame = 1
Query: 1 AAHRGMVNICEMLLEKGVDVEAMSEDGFNALIAGASEGHATVVELLLEKGKANPNAKDKLPFAVDVSLICLSSAGCLFLLYTLKD----------GTTALMGASVRGHKEVVDVLLAHRANVDQQNGGGHTALMFA 378
AA G +N +LL++G + + G L A G A +LL++G P K P+ + + + A + L+ L+D G AL A+ G+ E+V +LLA A+V+Q+N G TAL A
Sbjct: 43 AASAGNLNAMRVLLDRGAKRDKQTGSGETPLEAAVLNGQAQAACMLLQRGAKLPPPAHK-PYLLPAAALTEDFASAVALVAILRDHDFDPNARMNGDAALHIAAELGNVELVRLLLARGASVEQRNSRGETALAIA 177
BLAST of mRNA_H-elongata_contig89145.16417.1 vs. uniprot
Match: T0RL16_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RL16_SAPDV) HSP 1 Score: 53.5 bits (127), Expect = 1.120e-5 Identity = 40/136 (29.41%), Postives = 60/136 (44.12%), Query Frame = 1
Query: 1 AAHRGMVNICEMLLEKGVDVEAMSEDGFNALIAGASEGHATVVELLLEKGK---ANPNAKDKLPFAVDVSLICLSSAGCLFLL-------YTLKDGTTALMGASVRGHKEVVDVLLAHRANVDQQNGGGHTALMFA 378
A H + + L++ G EA +G L+ S H +E+LL + + + P V+ L +A L L L DG T L A+ RG E+V +LLAH AN+D + G T +M+A
Sbjct: 1035 APHAYRAELIDYLIDHGAWQEARDSNGETPLLLATSLNHVDCIEVLLRRAADVHVVSSMTHETPIMTAVAANFLEAAHLLLGLGRCSPHATDLNDGATLLHDAAARGFVEMVQLLLAHGANIDAVDVDGSTPIMYA 1170
BLAST of mRNA_H-elongata_contig89145.16417.1 vs. uniprot
Match: A0A4Y2EMN2_ARAVE (Ankyrin-3 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2EMN2_ARAVE) HSP 1 Score: 53.5 bits (127), Expect = 1.120e-5 Identity = 40/146 (27.40%), Postives = 65/146 (44.52%), Query Frame = 1
Query: 1 AAHRGMVNICEMLLEKGVDVEAMSEDGFNALIAGASEGHATVVELLLEKG---KANPNAKDKLP----------------------FAVDVSLICLSSAGCLFLLYTLK--DGTTALMGASVRGHKEVVDVLLAHRANVDQQNGGG 357
AA G N+C++LLEK VDV A D + + EGH V+ +LL G A+P+ KL A +V + + + L + + T L A ++G++E+VD+LL ++ N + +N G
Sbjct: 1624 AARNGKANVCDLLLEKNVDVNAFRADDESPINLALVEGHKEVLSVLLHHGAYYNAHPSTLLKLNKDNDAGSLLRKVKNLFTAVQNNMASEVETLLKEESNSKYCLANARCVEKETVLHYACLKGYEEIVDILLKYKTNPNTRNETG 1769
BLAST of mRNA_H-elongata_contig89145.16417.1 vs. uniprot
Match: A0A7S0M2Z9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M2Z9_9CRYP) HSP 1 Score: 49.7 bits (117), Expect = 3.780e-5 Identity = 34/114 (29.82%), Postives = 53/114 (46.49%), Query Frame = 1
Query: 37 LLEKGVDVEAMSEDGFNALIAGASEGHATVVELLLEKGKANPNAKDKLPFAVDVSLICLSSAGCLFLLYTLKDGTTALMGASVRGHKEVVDVLLAHRANVDQQNGGGHTALMFA 378
L + GV E+G++ LI + GH V+ L+ KG ANPN+ D TA+ A++ GH+E++ +LL+H+A+ + GG T LM A
Sbjct: 20 LSQHGVSPNVRDENGWSPLIMASKNGHVETVKCLIAKG-ANPNSPDI--------------------------SHTAIRAAALFGHREIIRLLLSHKADPCAISLGGRTPLMGA 106
BLAST of mRNA_H-elongata_contig89145.16417.1 vs. uniprot
Match: A0A813LKL6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LKL6_POLGL) HSP 1 Score: 51.6 bits (122), Expect = 4.040e-5 Identity = 42/117 (35.90%), Postives = 61/117 (52.14%), Query Frame = 1
Query: 1 AAHRGMVNICEMLLEKGVDVEAMSEDGFNALIAGASEGHATVVELLLEKGKANPNAKDKLPFAVDVSLICLSSAGCLFLLYTLKDGTTALMGASVRG-HKEVVDVLLAHRANVDQQN 348
AA +G + E+LL+ DVEA+ E G++ L + AS+GHA+VV LL++KG A+P DV++ AG GT + A+ +G H EV VL AN Q+
Sbjct: 129 AAWQGHLEATELLLDNRADVEAVDERGWSPLCSAASQGHASVVRLLVQKG-ADPRR--------DVAV-----AG---------QGTMNALQAAAKGRHVEVAQVLKEALANAPAQS 222
BLAST of mRNA_H-elongata_contig89145.16417.1 vs. uniprot
Match: A0A4D9D014_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D014_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 4.770e-5 Identity = 42/128 (32.81%), Postives = 57/128 (44.53%), Query Frame = 1
Query: 1 AAHRGMVNICEMLLEKGVDVEAMSEDGFNALIAGAS--EGHATVVELLLEKGKANPNAKDKLPFAVDVSLICLSSAGCLFLLYTLKDGTTALMGASVRGHKEVVDVLLAHRANVDQQNGGGHTALMFA 378
AA RG ++ LL++G DV DG AL A+ G+A VV+LLLEKG A+P K + L G + T + G G +K R ++D Q+G G TAL A
Sbjct: 55 AASRGHSSVVGCLLDRGADVHLRDLDGMTALTHAAAGRRGNAKVVQLLLEKGGADPGTACKWGSTPLMEAAALGFEGRMQAFLTRRRGENQGRGGKSETNKRWSG---GSRVSIDCQDGKGATALFKA 179 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89145.16417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig89145.16417.1 >prot_H-elongata_contig89145.16417.1 ID=prot_H-elongata_contig89145.16417.1|Name=mRNA_H-elongata_contig89145.16417.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp MVNICEMLLEKGVDVEAMSEDGFNALIAGASEGHATVVELLLEKGKANPNback to top mRNA from alignment at H-elongata_contig89145:1203..1619+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig89145.16417.1 ID=mRNA_H-elongata_contig89145.16417.1|Name=mRNA_H-elongata_contig89145.16417.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at H-elongata_contig89145:1203..1619+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig89145:1203..1619+ >mRNA_H-elongata_contig89145.16417.1 ID=mRNA_H-elongata_contig89145.16417.1|Name=mRNA_H-elongata_contig89145.16417.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig89145:1203..1619+ (Himanthalia elongata Himel1 dioecious)back to top |