mRNA_H-elongata_contig8902.16411.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8902.16411.1 vs. uniprot
Match: D7FR50_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR50_ECTSI) HSP 1 Score: 358 bits (918), Expect = 9.730e-99 Identity = 454/1178 (38.54%), Postives = 548/1178 (46.52%), Query Frame = 3
Query: 3 DNTLVMLDPLVAEGHAPD-PATTVGAPSLGTGKDAH--AKIDPQLPGVSHPAQKGTPELDTIEEASSTSGSLGAAPQVPTPTGGWSQGHSADLTSVGMVAVTSASSSQGEAASSSPGESLDASTTGDA--PIRRSHFYNSVPMLDSGGNEVGEGVNEGLCAEAGGEEKSGLPSVSVHQLPYWKTEGGEATVEL----EGTQFGVHKIPGNPPYESDDEE--LDNDGSHPERFLGGMPEDESAMRVLKLPNGRVRRSADXXXXXXXXXXXXXXXXXX---------------TVPLGLTAPSWAQAPPLSSCSVVETAMDSGHLPPLSINVVAEPTPLFLSAPRPPAVTTASPPSGGPVMQAPRPPALSAHMSSAXXXXXXXXXSSIAPKQPAIKAQRTSATVTPSTVASSMQVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGSPVSHSSGRLRGASFSGSNAESGSLTLMKGASTPGTVSPPMMFRSGTRLVSSTFKAVRGVVASDQTTAASM-AALGSDPGFVTP-PVGSAVSLQRARSFSPVEHVAQDASTAGSFSAFTSTPTAPAPS-----------------------FPAPQPPGMTVD-AMDHSMKMQGHS-----TGNVNGAGSGAPMIYGRGDKQLTASQPGDPELQESLSGSGGGVAPGRFPTMTMIKLANLQGTEREMMKMVIHVIIDGRLQEVEFDFNLEEEHPDQVSLEMIRELGLSFEEHGPISAMISNLATEARRRRGRRPSSNSS------IKGSFGAV-----------------SFGSSGGEFAASGGSEGADNDPLAVSLPSGVEEVLSEDEADIEEDDEYRSRKLIHDRKKRQAEKAYEARLAALLAARSDRTDEHIRAQERYKKECDDFDKKVEKLLNEKERRMNECLNELRGLEDGYRQRYRVAKQAKRHVVTATGHLSTQIGMVSVSQPPLEVAPTPTSYAQLRS--------DHGQRFGESAPYGGPGQQGQLSDDGPDEPRL------------------LSDQVMKLSQFVSPNQFNSNEGQIEGGWTSSMLQHQRXXXXXXXGANNLGPKMENDEEARRDRLSTL 3218
DNTLVML+PL AEG PA+T G P + G D + AKIDP LPGV HPAQ+GTP LDTI+E + S A Q GD P RR Y + M D G E+G E+ G P GG A V + E Q G KIPGNPP+ESDD+E +ND SHPE FL MPEDES+MRVL+LP+GRV+R XXXXXXXXXXXXXXXXXX TV APS AQ PPL+S + V + P + VA + P QAPRPP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + + GR R S G VSP MMF + V G +D + AAS L SDPGF P+G AV LQRARSFSP++H + S + P PAP+ P+P G ++ A + + G + T N NG G + G G+ ++Q D ELQ+ LSG G A GR +T IK+ANLQG+E+E+M++V+H I+GRLQEVEFDFNL+ +HP QVS EMI+ELGLS EE G IS I+NLA +ARRRR RR SSNSS + + G+ S GS G+ A G SE ADND L GV++V S+D+ IE+DDE++ +K +HD+KKRQAEK YEARLAALLAAR+DR DEH RA ERYKK+C++FDKKVEKL EKERRM ECL ELRGLEDGYRQ++R AKQAKR A G+++ Q+ ++SV QPP+E APTP YAQ R HGQ E+A G G GQ+ G PR +SDQ Q ++ +QFNSNEGQ+ G S L XXXXXX A+RDRLSTL
Sbjct: 244 DNTLVMLEPLAAEGAGGQIPASTAGVPLVAQGMDLNVPAKIDPLLPGVLHPAQRGTPGLDTIDETVTPS----AHAQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGGGDGDTGTPSRRPS-YAAALMSDPTGGEIGGXXXXXXXXXXXXXEQGGDAKPVEGNPPLQGAAGGSAEVSVLEPEEAPQTGGRKIPGNPPFESDDDEDEQENDISHPEGFLRAMPEDESSMRVLQLPDGRVQRRXXXXXXXXXXXXXXXXXXXXXXXXVSGGTPSDDAETVASVQVAPSSAQTPPLTSGAPVSS--------PAEVVAVA---------------------AAAPTGQAPRPPTA---------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVFYSAGGRQRPGS--------------------GAVSPEMMFPT-----------VGG--GNDPSAAASANGGLLSDPGFFASLPLGPAVGLQRARSFSPLDHPPE----VSLHSVASMPPMVPAPTAXXXXXXLTSXXXXXXXXXXXXXXXXPRPQGGSLQYAEKQAPRADGGAQPQEVTSNANGPG----VASGEGENPPVSAQQSDQELQDMLSGRAAGSA-GRC--LTEIKIANLQGSEQEIMRLVMHTHIEGRLQEVEFDFNLDTDHPKQVSAEMIKELGLSDEELGQISLTITNLAEKARRRRIRRVSSNSSGLVGQMVDSNAGSTLPWTGSDTNITSGTHRGSQGSCVGDGATVGISEAADNDNGVGYLGGGVDKVCSDDDLGIEDDDEFQKKKAVHDKKKRQAEKVYEARLAALLAARNDRQDEHKRALERYKKDCEEFDKKVEKLRGEKERRMEECLGELRGLEDGYRQKHRDAKQAKRQGA-APGNIAAQVNLLSVGQPPVEAAPTPQGYAQQRQAMIQGQNQSHGQGMKEAA-VGQDG--GQVPVMGSSRPRNAEIDGVAEDVQGGGAGGGMSDQK---KQPLNLSQFNSNEGQVTGTHRSGGLHEVAAXXXXXXXXXXXXXXX--XXAAKRDRLSTL 1211
BLAST of mRNA_H-elongata_contig8902.16411.1 vs. uniprot
Match: D7FR49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR49_ECTSI) HSP 1 Score: 74.7 bits (182), Expect = 9.380e-11 Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = -1
Query: 4169 RIWDRGSLVAINPAEREAYVSTCDALLEPEGRILLTTLVYDQETMKG 4309
R+WDRG+LVA+ P +RE YVSTCD++LEP G+ILL TLVYDQ KG
Sbjct: 136 RVWDRGALVALRPEDREEYVSTCDSVLEPGGKILLATLVYDQNAKKG 182
BLAST of mRNA_H-elongata_contig8902.16411.1 vs. uniprot
Match: A0A2E4LNX5_9DELT (Thiopurine S-methyltransferase n=2 Tax=root TaxID=1 RepID=A0A2E4LNX5_9DELT) HSP 1 Score: 64.3 bits (155), Expect = 1.890e-7 Identity = 45/120 (37.50%), Postives = 57/120 (47.50%), Query Frame = -1
Query: 4169 GGTTALFHLFPITKRYYSQNANNRLAETIFQDTVTLLYPHQPTLHVTYIPSSTQIFSPRNIFTCTHTH-----RIWDRGSLVAINPAEREAYVSTCDALLEPEGRILLTTLVYDQETMKG 4513
G T L L TK+ + E +++ HQ Y SS IF + F H H I+DRGS+VAI+P ERE YV+ LEP GR+LL TL YDQ+ M G
Sbjct: 47 GKTLDLPWLAGRTKKVVGVELIRKAVEDFYEENKITHLIHQAGKLQLYSNSSIDIFQG-DFFDLNHEHVAPFKAIYDRGSIVAIDPPEREKYVNHLMXFLEPGGRLLLITLEYDQKQMTG 165
BLAST of mRNA_H-elongata_contig8902.16411.1 vs. uniprot
Match: UPI0014872664 (LOW QUALITY PROTEIN: probable thiopurine S-methyltransferase n=1 Tax=Cyclopterus lumpus TaxID=8103 RepID=UPI0014872664) HSP 1 Score: 56.2 bits (134), Expect = 2.190e-5 Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = -1
Query: 4169 IWDRGSLVAINPAEREAYVSTCDALLEPEGRILLTTLVYDQETMKG 4306
IWDRGSLVAINP +RE Y + +L+ P+ R LL TL+Y+ E KG
Sbjct: 36 IWDRGSLVAINPRDREKYAALMISLMXPDCRYLLDTLLYNPELYKG 81
BLAST of mRNA_H-elongata_contig8902.16411.1 vs. uniprot
Match: A0A6Q2WWI6_ESOLU (Thiopurine S-methyltransferase n=1 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2WWI6_ESOLU) HSP 1 Score: 56.6 bits (135), Expect = 6.800e-5 Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = -1
Query: 4169 IWDRGSLVAINPAEREAYVSTCDALLEPEGRILLTTLVYDQETMKG 4306
IWDRGSLVAINP +RE YV+ +L++ + R LL TL+Y+ E KG
Sbjct: 160 IWDRGSLVAINPRDREKYVALITSLMDKDCRYLLDTLLYNPELYKG 205
BLAST of mRNA_H-elongata_contig8902.16411.1 vs. uniprot
Match: A0A1A8QXR5_9TELE (Thiopurine S-methyltransferase n=1 Tax=Nothobranchius rachovii TaxID=451742 RepID=A0A1A8QXR5_9TELE) HSP 1 Score: 55.5 bits (132), Expect = 9.410e-5 Identity = 33/88 (37.50%), Postives = 42/88 (47.73%), Query Frame = -1
Query: 4169 HQPTLHVTYIPSSTQIFSPRNIF------------TCTHTHRIWDRGSLVAINPAEREAYVSTCDALLEPEGRILLTTLVYDQETMKG 4396
HQP +H ++ S +NIF IWDRGSLVAINP +RE Y +L+ + R LL TL+YD E G
Sbjct: 27 HQPAVHTMLKTHLEEVNSEKNIFLYRCDLFSFSSSVAGQFGAIWDRGSLVAINPKDRERYAGLIVSLMAADCRYLLDTLLYDPEKYGG 114
BLAST of mRNA_H-elongata_contig8902.16411.1 vs. uniprot
Match: C1BXC7_ESOLU (Thiopurine S-methyltransferase n=4 Tax=Esox lucius TaxID=8010 RepID=C1BXC7_ESOLU) HSP 1 Score: 56.6 bits (135), Expect = 9.710e-5 Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = -1
Query: 4169 IWDRGSLVAINPAEREAYVSTCDALLEPEGRILLTTLVYDQETMKG 4306
IWDRGSLVAINP +RE YV+ +L++ + R LL TL+Y+ E KG
Sbjct: 135 IWDRGSLVAINPRDREKYVALITSLMDKDCRYLLDTLLYNPELYKG 180 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8902.16411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8902.16411.1 >prot_H-elongata_contig8902.16411.1 ID=prot_H-elongata_contig8902.16411.1|Name=mRNA_H-elongata_contig8902.16411.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1068bp MLDPLVAEGHAPDPATTVGAPSLGTGKDAHAKIDPQLPGVSHPAQKGTPEback to top mRNA from alignment at H-elongata_contig8902:420..8875+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8902.16411.1 ID=mRNA_H-elongata_contig8902.16411.1|Name=mRNA_H-elongata_contig8902.16411.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=8456bp|location=Sequence derived from alignment at H-elongata_contig8902:420..8875+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8902:420..8875+ >mRNA_H-elongata_contig8902.16411.1 ID=mRNA_H-elongata_contig8902.16411.1|Name=mRNA_H-elongata_contig8902.16411.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=6408bp|location=Sequence derived from alignment at H-elongata_contig8902:420..8875+ (Himanthalia elongata Himel1 dioecious)back to top |