mRNA_H-elongata_contig121431.1641.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121431.1641.1
Unique NamemRNA_H-elongata_contig121431.1641.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121431.1641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121431contigH-elongata_contig121431:50..600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size520
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121431.1641.1prot_H-elongata_contig121431.1641.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121431 348..542 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929714.3644328-UTR-H-elongata_contig121431:49..2731622929714.3644328-UTR-H-elongata_contig121431:49..273Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121431 50..273 -
1691679129.3744075-UTR-H-elongata_contig121431:49..2731691679129.3744075-UTR-H-elongata_contig121431:49..273Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121431 50..273 -
1622929714.3796299-UTR-H-elongata_contig121431:304..3471622929714.3796299-UTR-H-elongata_contig121431:304..347Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121431 305..347 -
1691679129.3837218-UTR-H-elongata_contig121431:304..3471691679129.3837218-UTR-H-elongata_contig121431:304..347Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121431 305..347 -
1622929714.4058967-UTR-H-elongata_contig121431:542..6001622929714.4058967-UTR-H-elongata_contig121431:542..600Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121431 543..600 -
1691679129.4101284-UTR-H-elongata_contig121431:542..6001691679129.4101284-UTR-H-elongata_contig121431:542..600Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121431 543..600 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929714.3921704-CDS-H-elongata_contig121431:347..5421622929714.3921704-CDS-H-elongata_contig121431:347..542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121431 348..542 -
1691679129.3942318-CDS-H-elongata_contig121431:347..5421691679129.3942318-CDS-H-elongata_contig121431:347..542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121431 348..542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121431.1641.1

>prot_H-elongata_contig121431.1641.1 ID=prot_H-elongata_contig121431.1641.1|Name=mRNA_H-elongata_contig121431.1641.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
MDGDGAMRTLASIQQARKFAASDRHGPATALLMQVCAEKCKTRHVSPCWK
SIPVPVLILIIVLL*
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mRNA from alignment at H-elongata_contig121431:50..600-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121431.1641.1 ID=mRNA_H-elongata_contig121431.1641.1|Name=mRNA_H-elongata_contig121431.1641.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=551bp|location=Sequence derived from alignment at H-elongata_contig121431:50..600- (Himanthalia elongata Himel1 dioecious)
CGAAAGCCTTCTACCTTTGCGGTGACGCACAAAACAGTTAGAGGCACACA
AGGTTATCATGGATGGCGACGGAGCAATGAGGACTCTGGCTTCTATTCAG
CAAGCTAGGAAGTTTGCTGCATCTGATCGCCATGGCCCTGCGACAGCCTT
GCTAATGCAGGTCTGCGCCGAGAAGTGCAAGACACGACATGTCTCGCCCT
GCTGGAAATCCATACCAGTACCAGTACTTATACTAATAATAGTGCTTCTT
TGACATTTGAAATAGTACGCACTCGTTTGATGCTCGTTGAGCTCATGTAT
CTAGAGATACCAGGAGTAGTCGGGTAGAAGCAAACATCCTTTTTATCTCT
CGCTGGCGATCAACTCAACAGTGTTCGCTTGATGGTTAGCGTAGCAGACG
AACGCACAATATGTGTGGACGTGGTCCAATGGACGGGCCAGGAACGTCAT
TAGGCTATAAAAGAGGATGACAACACAACCCATTCTAGGCCAAAACATAT
GTTAAATGTTTTTTCCCAATATTTCGGAGTCTGCTTAAAACAAAGCCCAA
C
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Coding sequence (CDS) from alignment at H-elongata_contig121431:50..600-

>mRNA_H-elongata_contig121431.1641.1 ID=mRNA_H-elongata_contig121431.1641.1|Name=mRNA_H-elongata_contig121431.1641.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig121431:50..600- (Himanthalia elongata Himel1 dioecious)
ATGGATGGCGACGGAGCAATGAGGACTCTGGCTTCTATTCAGCAAGCTAG
GAAGTTTGCTGCATCTGATCGCCATGGCCCTGCGACAGCCTTGCTAATGC
AGGTCTGCGCCGAGAAGTGCAAGACACGACATGTCTCGCCCTGCTGGAAA
TCCATACCAGTACCAGTACTTATACTAATAATAGTGCTTCTTTGAATGGA
TGGCGACGGAGCAATGAGGACTCTGGCTTCTATTCAGCAAGCTAGGAAGT
TTGCTGCATCTGATCGCCATGGCCCTGCGACAGCCTTGCTAATGCAGGTC
TGCGCCGAGAAGTGCAAGACACGACATGTCTCGCCCTGCTGGAAATCCAT
ACCAGTACCAGTACTTATACTAATAATAGTGCTTCTTTGA
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