mRNA_H-elongata_contig88997.16408.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88997.16408.1
Unique NamemRNA_H-elongata_contig88997.16408.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig88997.16408.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 2.150e-43
Identity = 98/262 (37.40%), Postives = 138/262 (52.67%), Query Frame = 1
Query:    1 FHQVLGHPAEQITRNTTRMASVQLSGTRRPCVHCSESRVRRYTVPKSTENRADRRAGRLFIDLSGPFHVTSLRGIRFVMMCIDDVTRFKMVRFLKHKSDATNALRDVINDYFTPEGLK--IGVIRTDGGGERHG-QFLSFLSELGIKRESTPPYTPQYNGVMERALGLLRDKTVA-------LLRDVMEGKIDCLWAEAMAYACDMWNRCTSSSLDSGTSPYELWYGR-RPTFDSIPPFGTVGYLRRSKPGHKLSPRGASCI 753
            FH +  H  E + R T +    +L G    C  CS S+  R  + + T+ R+D++ GR+F DL G   + S+ G  + ++  DD TR   + FL++KSDA +A R  +       G+   + ++R+D GG+  G  F S  +EL IK+E TP Y+PQYNGV ER LGL+ +  +A       L   V   K D LWAEAM +AC+  N    S+     SPYE+WYG  RP      PF    Y R  +P  KL P+G SC 
Sbjct:   37 FHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASV-RANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY--PFSKPAYCRWQRPS-KLLPKGESCF 294          
BLAST of mRNA_H-elongata_contig88997.16408.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 1.270e-42
Identity = 100/262 (38.17%), Postives = 141/262 (53.82%), Query Frame = 1
Query:    1 FHQVLGHPAEQITRNTTRMASVQLSGTRRPCVHCSESRVRRYTVPKSTENRADRRAGRLFIDLSGPFHVTSLRGIRFVMMCIDDVTRFKMVRFLKHKSDATNALRDVINDYFTPEGLK--IGVIRTDGGGERHG-QFLSFLSELGIKRESTPPYTPQYNGVMERALGLLRDKTVA-------LLRDVMEGKIDCLWAEAMAYACDMWNRCTSSSLDSGTSPYELWYGR-RPTFDSIPPFGTVGYLRRSKPGHKLSPRGASCI 753
            FH +  H  + + R T +    +L G    C  CS ++  +  + + T++R+D++ GR+F+DL G   V S+ G  + M+  DD TR   + FLKHKSDA  A R  +      +G+   + ++R+D GGE  G +F S  +EL IK+E TP Y+PQYNGV ER LGL+ +  +A       L   V   K D LWAEAM +AC+  N    S+     SPYE+WYG  RP      PF    Y R  +P  KL P+G SC 
Sbjct:  669 FHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASV-RADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPY--PFLKPAYCRWQRPS-KLLPKGESCF 926          
BLAST of mRNA_H-elongata_contig88997.16408.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 1.280e-42
Identity = 100/262 (38.17%), Postives = 141/262 (53.82%), Query Frame = 1
Query:    1 FHQVLGHPAEQITRNTTRMASVQLSGTRRPCVHCSESRVRRYTVPKSTENRADRRAGRLFIDLSGPFHVTSLRGIRFVMMCIDDVTRFKMVRFLKHKSDATNALRDVINDYFTPEGLK--IGVIRTDGGGERHG-QFLSFLSELGIKRESTPPYTPQYNGVMERALGLLRDKTVA-------LLRDVMEGKIDCLWAEAMAYACDMWNRCTSSSLDSGTSPYELWYGR-RPTFDSIPPFGTVGYLRRSKPGHKLSPRGASCI 753
            FH +  H  + + R T +    +L G    C  CS ++  +  + + T++R+D++ GR+F+DL G   V S+ G  + M+  DD TR   + FLKHKSDA  A R  +      +G+   + ++R+D GGE  G +F S  +EL IK+E TP Y+PQYNGV ER LGL+ +  +A       L   V   K D LWAEAM +AC+  N    S+     SPYE+WYG  RP      PF    Y R  +P  KL P+G SC 
Sbjct:  376 FHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASV-RADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPY--PFLKPAYCRWQRPS-KLLPKGESCF 633          
BLAST of mRNA_H-elongata_contig88997.16408.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 2.940e-42
Identity = 101/263 (38.40%), Postives = 139/263 (52.85%), Query Frame = 1
Query:    1 FHQVLGHPAEQITRNTTRMASVQLSGTRRPCVHCSESRVRRYTVPKSTENRADRRAGRLFIDLSGPFHVTSLRGIRFVMMCIDDVTRFKMVRFLKHKSDATNALRDVINDY---FTPEGLKIGVIRTDGGGERHG-QFLSFLSELGIKRESTPPYTPQYNGVMERALGLLRDKTVA-------LLRDVMEGKIDCLWAEAMAYACDMWNRCTSSSLDSGTSPYELWYGR-RPTFDSIPPFGTVGYLRRSKPGHKLSPRGASCI 753
            FH +  H  E + R T +    +L G    C  CS S+  R  + + T+ R+D++ GR+F+DL G   + S+ G  + M+  DD TR   + FLK++SDA  A R  +        P  ++I  +R+D GGE  G +F S  +EL IK+E TP Y+PQYNGV ER LGL+ +  +A       L   V   K D LWAEAM +AC+  N    S+     SPYE+WYG  RP      PF    Y R  +P  KL P+G SC 
Sbjct:  257 FHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY--PFLKPAYCRWQRPT-KLLPKGESCF 514          
BLAST of mRNA_H-elongata_contig88997.16408.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 3.740e-41
Identity = 100/262 (38.17%), Postives = 139/262 (53.05%), Query Frame = 1
Query:    1 FHQVLGHPAEQITRNTTRMASVQLSGTRRPCVHCSESRVRRYTVPKSTENRADRRAGRLFIDLSGPFHVTSLRGIRFVMMCIDDVTRFKMVRFLKHKSDATNALRDVINDYFTPEGLK--IGVIRTDGGGERHG-QFLSFLSELGIKRESTPPYTPQYNGVMERALGLLRDKTVA-------LLRDVMEGKIDCLWAEAMAYACDMWNRCTSSSLDSGTSPYELWYGR-RPTFDSIPPFGTVGYLRRSKPGHKLSPRGASCI 753
            FH +  H  E + R T +    +L G    C  CS S+  R  +   T+ R+D++ GR+F+DL G   + S+ G  + M+  DD TR   + FL++KSDA +A R  +       G+   + ++R+D GGE  G +F S  +EL IK+E TP Y+PQYNGV ER LGL+ +  +A       L   V   K D LWAEAM +AC+  N    S+     SPYE+WYG  RP      PF    Y R  +P  KL P+G SC 
Sbjct:  190 FHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASV-RANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY--PFLKPAYCRWQRPT-KLLPKGESCF 447          
BLAST of mRNA_H-elongata_contig88997.16408.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 5.970e-41
Identity = 97/261 (37.16%), Postives = 138/261 (52.87%), Query Frame = 1
Query:    1 FHQVLGHPAEQITRNTTRMASVQLSGTRRPCVHCSESRVRRYTVPKSTENRADRRAGRLFIDLSGPFHVTSLRGIRFVMMCIDDVTRFKMVRFLKHKSDATNALRDVINDYFTPEGLK--IGVIRTDGGGERHG-QFLSFLSELGIKRESTPPYTPQYNGVMERALGLLRDKTVA-------LLRDVMEGKIDCLWAEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFDSIPPFGTVGYLRRSKPGHKLSPRGASCI 753
            FH +  H  E + R T +   ++L+G    C  CS S+  +  +   T+ R+D++ GR+F+DL G   V S+ G  + M+  DD TR   + FLK KSDA +A R  +      +G+   + ++R+D GGE  G +F S  +EL IK+E TP Y+PQYNGV ER LGL+    +A       L   V   K D LWAEAM +AC+  N    S+     SPYE+W+G        P F    Y R  +P  KL P+G +C 
Sbjct:  575 FHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASV-RADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEASHARPYP-FLKPAYCRWQRPS-KLLPKGEACF 832          
BLAST of mRNA_H-elongata_contig88997.16408.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 1.770e-40
Identity = 97/235 (41.28%), Postives = 129/235 (54.89%), Query Frame = 1
Query:    4 HQVLGHPAEQITRNTTRMASVQLSG-TRRPCVHCSESRVRRYTVPKSTENRADRRAGRLFIDLSGPFHVTSLRGIRFVMMCIDDVTRFKMVRFLKHKSDATNALRDVINDYFTPE-GLKIGVIRTDGGGERHGQFLSFLSELGIKRESTPPYTPQYNGVMERALGLLRDKTVALLRDVMEGKIDC-----LWAEAMAYACDMWNRCTSSSLDSG-TSPYELWYGRRPTFDSIPPF 684
            H   GH  E++ + T +   VQL+G    PC+ CS S+ +   + KST+ RA  +  RLF++L G     S+ G  + ++  DD TR+  V FLKHKSDA  A    + DY       ++ V RTDGGGE  GQF       GIK+E TPP TP+YNGV ERALGLL D  +A      E   D      LWAEA++ AC   N CT+++ + G  SP EL++G  P   S  PF
Sbjct:  139 HNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMN-CTATTGNPGHKSPEELFHGTPPPVGSTHPF 372          
BLAST of mRNA_H-elongata_contig88997.16408.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 2.810e-40
Identity = 99/262 (37.79%), Postives = 138/262 (52.67%), Query Frame = 1
Query:    1 FHQVLGHPAEQITRNTTRMASVQLSGTRRPCVHCSESRVRRYTVPKSTENRADRRAGRLFIDLSGPFHVTSLRGIRFVMMCIDDVTRFKMVRFLKHKSDATNALRDVINDYFTPEGLK--IGVIRTDGGGERHG-QFLSFLSELGIKRESTPPYTPQYNGVMERALGLLRDKTVA-------LLRDVMEGKIDCLWAEAMAYACDMWNRCTSSSLDSGTSPYELWYGR-RPTFDSIPPFGTVGYLRRSKPGHKLSPRGASCI 753
            FH +  H  E + R T +    +L G    C  CS S+  R  + + T+ R+D++ GR+F+DL G     S+ G  + M+  DD TR   + FL++KSDA +A R  +       G+   + ++R+D GGE  G +F S  +EL IK+E TP Y+PQYNGV ER LGL+ +  +A       L   V   K D LWAEAM +AC+  N    S+      PYE+WYG  RP      PF    Y R  +P  KL P+G SC 
Sbjct:  135 FHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASV-RANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGEPRPARPY--PFLKPAYCRWQRPT-KLLPKGESCF 392          
BLAST of mRNA_H-elongata_contig88997.16408.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 2.140e-37
Identity = 95/264 (35.98%), Postives = 137/264 (51.89%), Query Frame = 1
Query:    1 FHQVLGHPAEQITRNTTRMASVQLSGTRRPCVHCSESRVRRYTVPKSTENRADRRAGRLFIDLSGPFHVTSLRGIRFVMMCIDDVTRFKMVRFLKHKSDATNAL-RDVINDYFTPEGLKIGVIRTDGGGER-HGQFLSFLSELGIKRESTPPYTPQYNGVMERALGLLRDKTVAL---LRDVMEG--KIDCLWAEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFDSIPPFGTVGYLR----RSKPGHKLSPRGASCIML 759
            FH   GH  E + R T +     L G  R C+ CS ++     +P  T  RA ++  R+F+DLSG   V SL G  + ++  DD TR+  V FLKHKSDA  A  R +  +        + V+R+D GGE   G+F     +  IK+E TP ++P+YNGV ERALGL++D  +A       +  G      LWAEA+A++C+  N  +++S     SPYE+W+G  P     PP  T  +L+    + K  HK  P+   C  L
Sbjct:  513 FHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYL 771          
BLAST of mRNA_H-elongata_contig88997.16408.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 2.160e-37
Identity = 95/264 (35.98%), Postives = 137/264 (51.89%), Query Frame = 1
Query:    1 FHQVLGHPAEQITRNTTRMASVQLSGTRRPCVHCSESRVRRYTVPKSTENRADRRAGRLFIDLSGPFHVTSLRGIRFVMMCIDDVTRFKMVRFLKHKSDATNAL-RDVINDYFTPEGLKIGVIRTDGGGER-HGQFLSFLSELGIKRESTPPYTPQYNGVMERALGLLRDKTVAL---LRDVMEG--KIDCLWAEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFDSIPPFGTVGYLR----RSKPGHKLSPRGASCIML 759
            FH   GH  E + R T +     L G  R C+ CS ++     +P  T  RA ++  R+F+DLSG   V SL G  + ++  DD TR+  V FLKHKSDA  A  R +  +        + V+R+D GGE   G+F     +  IK+E TP ++P+YNGV ERALGL++D  +A       +  G      LWAEA+A++C+  N  +++S     SPYE+W+G  P     PP  T  +L+    + K  HK  P+   C  L
Sbjct:  526 FHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYL 784          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88997.16408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVR5_9PHAE2.150e-4337.40Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JBA7_9PHAE1.270e-4238.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE1.280e-4238.17Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV76_9PHAE2.940e-4238.40Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JRL9_9PHAE3.740e-4138.17Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5K2M6_9PHAE5.970e-4137.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LL52_9PHAE1.770e-4041.28Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L3Y0_9PHAE2.810e-4037.79Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZQ8_9PHAE2.140e-3735.98Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE2.160e-3735.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88997contigH-elongata_contig88997:950..1708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score119.4
Seed ortholog evalue2.4e-24
Seed eggNOG ortholog4558.Sb07g028153.1
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size759
Cds size759
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931291.2976415-CDS-H-elongata_contig88997:949..17081622931291.2976415-CDS-H-elongata_contig88997:949..1708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88997 950..1708 +
1691679776.0302117-CDS-H-elongata_contig88997:949..17081691679776.0302117-CDS-H-elongata_contig88997:949..1708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88997 950..1708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88997.16408.1prot_H-elongata_contig88997.16408.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88997 950..1708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88997.16408.1

>prot_H-elongata_contig88997.16408.1 ID=prot_H-elongata_contig88997.16408.1|Name=mRNA_H-elongata_contig88997.16408.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=253bp
FHQVLGHPAEQITRNTTRMASVQLSGTRRPCVHCSESRVRRYTVPKSTEN
RADRRAGRLFIDLSGPFHVTSLRGIRFVMMCIDDVTRFKMVRFLKHKSDA
TNALRDVINDYFTPEGLKIGVIRTDGGGERHGQFLSFLSELGIKRESTPP
YTPQYNGVMERALGLLRDKTVALLRDVMEGKIDCLWAEAMAYACDMWNRC
TSSSLDSGTSPYELWYGRRPTFDSIPPFGTVGYLRRSKPGHKLSPRGASC
IML
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mRNA from alignment at H-elongata_contig88997:950..1708+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88997.16408.1 ID=mRNA_H-elongata_contig88997.16408.1|Name=mRNA_H-elongata_contig88997.16408.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=759bp|location=Sequence derived from alignment at H-elongata_contig88997:950..1708+ (Himanthalia elongata Himel1 dioecious)
TTTCACCAGGTGCTGGGGCACCCGGCAGAGCAGATTACGCGCAACACGAC CCGTATGGCGAGCGTGCAGTTAAGTGGAACTAGGCGACCATGCGTACACT GCTCCGAATCTAGGGTGCGGCGATACACCGTGCCTAAATCCACGGAGAAT CGGGCTGACAGACGCGCGGGACGGCTGTTTATTGATCTCTCAGGCCCCTT TCACGTGACGTCTCTCAGAGGAATCAGATTCGTCATGATGTGCATTGACG ACGTCACCCGCTTCAAAATGGTTCGTTTCCTCAAGCACAAGAGCGACGCC ACGAATGCGTTAAGGGACGTAATCAACGACTACTTCACTCCCGAGGGCCT CAAGATCGGCGTCATCCGCACGGACGGTGGGGGAGAACGGCACGGCCAGT TCCTGTCTTTCCTGAGTGAGCTCGGAATCAAGCGCGAGTCCACACCCCCA TATACCCCCCAATACAATGGCGTCATGGAGCGCGCTCTGGGGCTACTGCG CGACAAGACCGTGGCCCTGCTGCGAGATGTAATGGAGGGTAAGATCGACT GTCTATGGGCGGAAGCTATGGCGTACGCATGCGATATGTGGAACCGATGT ACCTCCTCCTCCCTCGACAGCGGCACCTCGCCATATGAGCTTTGGTACGG CCGACGTCCTACATTCGACAGCATCCCCCCATTCGGGACCGTGGGATATC TACGACGGTCGAAGCCGGGGCACAAACTATCCCCCCGCGGAGCGAGCTGC ATCATGCTC
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Coding sequence (CDS) from alignment at H-elongata_contig88997:950..1708+

>mRNA_H-elongata_contig88997.16408.1 ID=mRNA_H-elongata_contig88997.16408.1|Name=mRNA_H-elongata_contig88997.16408.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1518bp|location=Sequence derived from alignment at H-elongata_contig88997:950..1708+ (Himanthalia elongata Himel1 dioecious)
TTTCACCAGGTGCTGGGGCACCCGGCAGAGCAGATTACGCGCAACACGAC
CCGTATGGCGAGCGTGCAGTTAAGTGGAACTAGGCGACCATGCGTACACT
GCTCCGAATCTAGGGTGCGGCGATACACCGTGCCTAAATCCACGGAGAAT
CGGGCTGACAGACGCGCGGGACGGCTGTTTATTGATCTCTCAGGCCCCTT
TCACGTGACGTCTCTCAGAGGAATCAGATTCGTCATGATGTGCATTGACG
ACGTCACCCGCTTCAAAATGGTTCGTTTCCTCAAGCACAAGAGCGACGCC
ACGAATGCGTTAAGGGACGTAATCAACGACTACTTCACTCCCGAGGGCCT
CAAGATCGGCGTCATCCGCACGGACGGTGGGGGAGAACGGCACGGCCAGT
TCCTGTCTTTCCTGAGTGAGCTCGGAATCAAGCGCGAGTCCACACCCCCA
TATACCCCCCAATACAATGGCGTCATGGAGCGCGCTCTGGGGCTACTGCG
CGACAAGACCGTGGCCCTGCTGCGAGATGTAATGGAGGGTAAGATCGACT
GTCTATGGGCGGAAGCTATGGCGTACGCATGCGATATGTGGAACCGATGT
ACCTCCTCCTCCCTCGACAGCGGCACCTCGCCATATGAGCTTTGGTACGG
CCGACGTCCTACATTCGACAGCATCCCCCCATTCGGGACCGTGGGATATC
TACGACGGTCGAAGCCGGGGCACAAACTATCCCCCCGCGGAGCGAGCTGC
ATCATGCTCTTTCACCAGGTGCTGGGGCACCCGGCAGAGCAGATTACGCG
CAACACGACCCGTATGGCGAGCGTGCAGTTAAGTGGAACTAGGCGACCAT
GCGTACACTGCTCCGAATCTAGGGTGCGGCGATACACCGTGCCTAAATCC
ACGGAGAATCGGGCTGACAGACGCGCGGGACGGCTGTTTATTGATCTCTC
AGGCCCCTTTCACGTGACGTCTCTCAGAGGAATCAGATTCGTCATGATGT
GCATTGACGACGTCACCCGCTTCAAAATGGTTCGTTTCCTCAAGCACAAG
AGCGACGCCACGAATGCGTTAAGGGACGTAATCAACGACTACTTCACTCC
CGAGGGCCTCAAGATCGGCGTCATCCGCACGGACGGTGGGGGAGAACGGC
ACGGCCAGTTCCTGTCTTTCCTGAGTGAGCTCGGAATCAAGCGCGAGTCC
ACACCCCCATATACCCCCCAATACAATGGCGTCATGGAGCGCGCTCTGGG
GCTACTGCGCGACAAGACCGTGGCCCTGCTGCGAGATGTAATGGAGGGTA
AGATCGACTGTCTATGGGCGGAAGCTATGGCGTACGCATGCGATATGTGG
AACCGATGTACCTCCTCCTCCCTCGACAGCGGCACCTCGCCATATGAGCT
TTGGTACGGCCGACGTCCTACATTCGACAGCATCCCCCCATTCGGGACCG
TGGGATATCTACGACGGTCGAAGCCGGGGCACAAACTATCCCCCCGCGGA
GCGAGCTGCATCATGCTC
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