mRNA_H-elongata_contig88951.16403.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig88951.16403.1 vs. uniprot
Match: A0A6H5JAT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAT0_9PHAE) HSP 1 Score: 100 bits (250), Expect = 5.910e-23 Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = 1
Query: 7 QVFTMYSAHLKGDWNGVMLALSVKDGNNCVVHVATAITKKEGGPSYEYLLGNAKRNTKLGEWITRETTTCITDGHKGLDYALPKLVPLAESRRCVHHLLKNVPAVG 324
QV M AH+KG+WNG + A++ K +N +VH+AT I KE G +Y YL+ NA +N + ++ + +TT ITD HKG + A+P + AE C H+LKN AVG
Sbjct: 203 QVLCMDFAHMKGEWNGTIGAMTTKSSDNTIVHLATCIVAKENGNAYRYLIDNALKNPTVAAFLKKPSTTIITDKHKGSESAVPDGLDEAEYLTCAEHMLKNCGAVG 308
BLAST of mRNA_H-elongata_contig88951.16403.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 4.970e-21 Identity = 48/106 (45.28%), Postives = 60/106 (56.60%), Query Frame = 1
Query: 7 QVFTMYSAHLKGDWNGVMLALSVKDGNNCVVHVATAITKKEGGPSYEYLLGNAKRNTKLGEWITRETTTCITDGHKGLDYALPKLVPLAESRRCVHHLLKNVPAVG 324
QVF M +A WNG A+S KD NN ++HVAT + KE Y LL A + +L + TTC TD HKG D A+PK+ PL E RRCV HL + V +G
Sbjct: 228 QVFAMDAAAFHDVWNGQFGAISFKDANNKIIHVATMVQAKENAAMYTELLTRAMQFPELKTILNNVNTTCFTDKHKGSDAAVPKICPLTEHRRCVEHLTRTVGCIG 333
BLAST of mRNA_H-elongata_contig88951.16403.1 vs. uniprot
Match: UPI000CD7FC1A (uncharacterized protein LOC111919800 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD7FC1A) HSP 1 Score: 58.5 bits (140), Expect = 9.720e-8 Identity = 29/95 (30.53%), Postives = 49/95 (51.58%), Query Frame = 1
Query: 25 SAHLKGDWNGVMLALSVKDGNNCVVHVATAITKKEGGPSYEYLLGNAKRNTKLGEWITRETTTCITDGHKGLDYALPKLVPLAESRRCVHHLLKN 309
+ HLKG +NGV++A + DGNN + + + K E S+ + L + K+ ++ + +D KGL+ A+ + P E R C+ HL N
Sbjct: 131 ACHLKGKFNGVLVAATGIDGNNSIFPITYCVLKSEKTQSWPWFLNSLKKAIRMPNGLV-----ISSDMQKGLEVAIMNVYPNVEHRECIRHLYSN 220
BLAST of mRNA_H-elongata_contig88951.16403.1 vs. uniprot
Match: UPI001652E71E (uncharacterized protein LOC110893254 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI001652E71E) HSP 1 Score: 58.2 bits (139), Expect = 1.200e-7 Identity = 33/95 (34.74%), Postives = 50/95 (52.63%), Query Frame = 1
Query: 25 SAHLKGDWNGVMLALSVKDGNNCVVHVATAITKKEGGPSYEYLLGNAKRNTKLGEWITRETTTCITDGHKGLDYALPKLVPLAESRRCVHHLLKN 309
+ HLKG +NGV++A + DGNN + VA + + E S+ + L K+ +G T +D KGLD A+ ++ P E R C+ HL N
Sbjct: 180 ACHLKGKFNGVLVAANSVDGNNSIFPVAYGVLESENKNSWIWFLELLKK--AIG---TPNGLVISSDMQKGLDIAITQVYPNVEHRECIRHLFSN 269
BLAST of mRNA_H-elongata_contig88951.16403.1 vs. uniprot
Match: UPI001652F7B6 (uncharacterized protein LOC110937514 n=2 Tax=Helianthus annuus TaxID=4232 RepID=UPI001652F7B6) HSP 1 Score: 58.2 bits (139), Expect = 1.610e-7 Identity = 33/95 (34.74%), Postives = 50/95 (52.63%), Query Frame = 1
Query: 25 SAHLKGDWNGVMLALSVKDGNNCVVHVATAITKKEGGPSYEYLLGNAKRNTKLGEWITRETTTCITDGHKGLDYALPKLVPLAESRRCVHHLLKN 309
+ HLKG +NGV++A + DGNN + VA + + E S+ + L K+ +G T +D KGLD A+ ++ P E R C+ HL N
Sbjct: 394 ACHLKGKFNGVLVAANSVDGNNSIFPVAYGVLESENKNSWIWFLELLKK--AIG---TPNGLVISSDMQKGLDIAITQVYPNVEHRECIRHLFSN 483
BLAST of mRNA_H-elongata_contig88951.16403.1 vs. uniprot
Match: A0A5N6Q553_9ASTR (SWIM-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q553_9ASTR) HSP 1 Score: 55.5 bits (132), Expect = 1.410e-6 Identity = 34/103 (33.01%), Postives = 55/103 (53.40%), Query Frame = 1
Query: 25 SAHLKGDWNGVMLALSVKDGNNCVVHVATAITKKEGGPSYEYLLGNAKRNTKLGEWITRETTTCITDGHKGLDYALPKLVPLAESRRCVHHLLKNVPAVGSVS 333
+ HLKG +NGV++A + DGNN + VA + + E S+ + L K+ +G T + +D KGL+ A+ ++ P E R C+ HL N A+ +S
Sbjct: 381 ACHLKGKFNGVLVAATSVDGNNSIFPVAYGVLESENKNSWIWFLELLKK--AIG---TPDGLVISSDMQKGLEVAITQIYPNVEHRECMRHL-SNKQALAYIS 477 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88951.16403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig88951.16403.1 >prot_H-elongata_contig88951.16403.1 ID=prot_H-elongata_contig88951.16403.1|Name=mRNA_H-elongata_contig88951.16403.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp MGQVFTMYSAHLKGDWNGVMLALSVKDGNNCVVHVATAITKKEGGPSYEYback to top mRNA from alignment at H-elongata_contig88951:80..415- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig88951.16403.1 ID=mRNA_H-elongata_contig88951.16403.1|Name=mRNA_H-elongata_contig88951.16403.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=336bp|location=Sequence derived from alignment at H-elongata_contig88951:80..415- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig88951:80..415- >mRNA_H-elongata_contig88951.16403.1 ID=mRNA_H-elongata_contig88951.16403.1|Name=mRNA_H-elongata_contig88951.16403.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig88951:80..415- (Himanthalia elongata Himel1 dioecious)back to top |